RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 SEC23AQ15436 765 aa16.88■□□□□ 0.29
UPF1-211ENST00000600868 DGKHQ86XP1 1220 aa16.88■□□□□ 0.29
UPF1-211ENST00000600868 ZKSCAN4Q969J2 545 aaPredicted RBP16.88■□□□□ 0.29
UPF1-211ENST00000600868 CEP95Q96GE4 821 aa16.88■□□□□ 0.29
UPF1-211ENST00000600868 ZKSCAN3Q9BRR0 538 aa16.88■□□□□ 0.29
UPF1-211ENST00000600868 AGXT2Q9BYV1 514 aa16.88■□□□□ 0.29
UPF1-211ENST00000600868 PICK1Q9NRD5 415 aa16.88■□□□□ 0.29
UPF1-211ENST00000600868 PDRG1Q9NUG6 133 aa16.88■□□□□ 0.29
UPF1-211ENST00000600868 MTMR4Q9NYA4 1195 aa16.88■□□□□ 0.29
UPF1-211ENST00000600868 CSADQ9Y600 493 aa16.88■□□□□ 0.29
UPF1-211ENST00000600868 TNKSO95271 1327 aa16.88■□□□□ 0.29
UPF1-211ENST00000600868 ERICH2A1L162 156 aa16.87■□□□□ 0.29
UPF1-211ENST00000600868 SH2B2O14492 632 aaPredicted RBP16.87■□□□□ 0.29
UPF1-211ENST00000600868 LIFRP42702 1097 aa16.87■□□□□ 0.29
UPF1-211ENST00000600868 VGLL4Q14135 290 aa16.87■□□□□ 0.29
UPF1-211ENST00000600868 RAB3GAP1Q15042 981 aa16.87■□□□□ 0.29
UPF1-211ENST00000600868 TMEM67Q5HYA8 995 aa16.87■□□□□ 0.29
UPF1-211ENST00000600868 RCSD1Q6JBY9 416 aa16.87■□□□□ 0.29
UPF1-211ENST00000600868 Q6ZUG5 572 aa16.87■□□□□ 0.29
UPF1-211ENST00000600868 MOB2Q70IA6 237 aa16.87■□□□□ 0.29
UPF1-211ENST00000600868 TMTC2Q8N394 836 aa16.87■□□□□ 0.29
UPF1-211ENST00000600868 ENAHQ8N8S7 591 aaPredicted RBP16.87■□□□□ 0.29
UPF1-211ENST00000600868 TCEANC2Q96MN5 208 aa16.87■□□□□ 0.29
UPF1-211ENST00000600868 LRRC2Q9BYS8 371 aa16.87■□□□□ 0.29
UPF1-211ENST00000600868 NYAP2Q9P242 653 aa16.87■□□□□ 0.29
UPF1-211ENST00000600868 OTOFQ9HC10 1997 aa16.87■□□□□ 0.29
UPF1-211ENST00000600868 UBE2Q2LH0YL09 131 aa16.86■□□□□ 0.29
UPF1-211ENST00000600868 TTLL1O95922 423 aa16.86■□□□□ 0.29
UPF1-211ENST00000600868 PTPRAP18433 802 aa16.86■□□□□ 0.29
UPF1-211ENST00000600868 FGD1P98174 961 aa16.86■□□□□ 0.29
UPF1-211ENST00000600868 ICA1Q05084 483 aa16.86■□□□□ 0.29
UPF1-211ENST00000600868 WTAPQ15007 396 aa16.86■□□□□ 0.29
UPF1-211ENST00000600868 TBC1D2Q9BYX2 928 aa16.86■□□□□ 0.29
UPF1-211ENST00000600868 LY9Q9HBG7 655 aa16.86■□□□□ 0.29
UPF1-211ENST00000600868 SNCAIPQ9Y6H5 919 aa16.86■□□□□ 0.29
UPF1-211ENST00000600868 USP17L5A8MUK1 530 aa16.85■□□□□ 0.29
UPF1-211ENST00000600868 ST18O60284 1047 aa16.85■□□□□ 0.29
UPF1-211ENST00000600868 EEF2P13639 858 aaKnown RBP16.85■□□□□ 0.29
UPF1-211ENST00000600868 TOB2Q14106 344 aaPredicted RBP16.85■□□□□ 0.29
UPF1-211ENST00000600868 ANKRD1Q15327 319 aa16.85■□□□□ 0.29
UPF1-211ENST00000600868 IFIT1BQ5T764 474 aaKnown RBP16.85■□□□□ 0.29
UPF1-211ENST00000600868 SGMS1Q86VZ5 419 aa16.85■□□□□ 0.29
UPF1-211ENST00000600868 SIAH1Q8IUQ4 282 aa16.85■□□□□ 0.29
UPF1-211ENST00000600868 MKL1Q969V6 931 aa16.85■□□□□ 0.29
UPF1-211ENST00000600868 GPHNQ9NQX3 736 aaPredicted RBP16.85■□□□□ 0.29
UPF1-211ENST00000600868 SYNPO2Q9UMS6 1093 aa16.85■□□□□ 0.29
UPF1-211ENST00000600868 STX8Q9UNK0 236 aa16.85■□□□□ 0.29
UPF1-211ENST00000600868 TOP1P11387 765 aaKnown RBP16.84■□□□□ 0.29
UPF1-211ENST00000600868 CLEC10AQ8IUN9 316 aa16.84■□□□□ 0.29
UPF1-211ENST00000600868 TMEM47Q9BQJ4 181 aa16.84■□□□□ 0.29
UPF1-211ENST00000600868 WDR18Q9BV38 432 aa16.84■□□□□ 0.29
UPF1-211ENST00000600868 AS3MTQ9HBK9 375 aa16.84■□□□□ 0.29
UPF1-211ENST00000600868 ARHGEF10LQ9HCE6 1279 aa16.84■□□□□ 0.29
UPF1-211ENST00000600868 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.84■□□□□ 0.29
UPF1-211ENST00000600868 CLIP2Q9UDT6 1046 aa16.84■□□□□ 0.29
UPF1-211ENST00000600868 AK2P54819 239 aa16.83■□□□□ 0.28
UPF1-211ENST00000600868 EVCP57679 992 aa16.83■□□□□ 0.28
UPF1-211ENST00000600868 ERO1BQ86YB8 467 aa16.83■□□□□ 0.28
UPF1-211ENST00000600868 BRF1Q92994 677 aa16.83■□□□□ 0.28
UPF1-211ENST00000600868 SLC10A4Q96EP9 437 aa16.83■□□□□ 0.28
UPF1-211ENST00000600868 CLMNQ96JQ2 1002 aa16.83■□□□□ 0.28
UPF1-211ENST00000600868 ELP3Q9H9T3 547 aa16.83■□□□□ 0.28
UPF1-211ENST00000600868 SENP2Q9HC62 589 aa16.83■□□□□ 0.28
UPF1-211ENST00000600868 ZHX2Q9Y6X8 837 aa16.83■□□□□ 0.28
UPF1-211ENST00000600868 CCDC69A6NI79 296 aa16.82■□□□□ 0.28
UPF1-211ENST00000600868 SPDYE5A6NIY4 337 aa16.82■□□□□ 0.28
UPF1-211ENST00000600868 TMEM88BA6NKF7 163 aa16.82■□□□□ 0.28
UPF1-211ENST00000600868 MCM2P49736 904 aa16.82■□□□□ 0.28
UPF1-211ENST00000600868 ATP2B2Q01814 1243 aa16.82■□□□□ 0.28
UPF1-211ENST00000600868 PPATQ06203 517 aa16.82■□□□□ 0.28
UPF1-211ENST00000600868 NFXL1Q6ZNB6 911 aa16.82■□□□□ 0.28
UPF1-211ENST00000600868 CCDC84Q86UT8 332 aaPredicted RBP16.82■□□□□ 0.28
UPF1-211ENST00000600868 ZNF280CQ8ND82 737 aa16.82■□□□□ 0.28
UPF1-211ENST00000600868 ACER1Q8TDN7 264 aa16.82■□□□□ 0.28
UPF1-211ENST00000600868 SH2D4AQ9H788 454 aa16.82■□□□□ 0.28
UPF1-211ENST00000600868 KAT14Q9H8E8 782 aa16.82■□□□□ 0.28
UPF1-211ENST00000600868 TSHZ2Q9NRE2 1034 aa16.82■□□□□ 0.28
UPF1-211ENST00000600868 TMX2Q9Y320 296 aa16.82■□□□□ 0.28
UPF1-211ENST00000600868 AFG3L2Q9Y4W6 797 aa16.82■□□□□ 0.28
UPF1-211ENST00000600868 MYH4Q9Y623 1939 aa16.82■□□□□ 0.28
UPF1-211ENST00000600868 PHIPQ8WWQ0 1821 aa16.82■□□□□ 0.28
UPF1-211ENST00000600868 A0A1W2PRG0 241 aa16.81■□□□□ 0.28
UPF1-211ENST00000600868 HUNKP57058 714 aa16.81■□□□□ 0.28
UPF1-211ENST00000600868 SAPCD2Q86UD0 394 aa16.81■□□□□ 0.28
UPF1-211ENST00000600868 SNX21Q969T3 373 aa16.81■□□□□ 0.28
UPF1-211ENST00000600868 KIAA1683Q9H0B3 1180 aa16.81■□□□□ 0.28
UPF1-211ENST00000600868 BRPF3Q9ULD4 1205 aa16.81■□□□□ 0.28
UPF1-211ENST00000600868 TLL2Q9Y6L7 1015 aa16.81■□□□□ 0.28
UPF1-211ENST00000600868 KLF18A0A0U1RQI7 1052 aa16.8■□□□□ 0.28
UPF1-211ENST00000600868 CD2BP2O95400 341 aaKnown RBP16.8■□□□□ 0.28
UPF1-211ENST00000600868 ECE1P42892 770 aa16.8■□□□□ 0.28
UPF1-211ENST00000600868 RCAN1P53805 252 aa16.8■□□□□ 0.28
UPF1-211ENST00000600868 APOBRQ0VD83 1088 aa16.8■□□□□ 0.28
UPF1-211ENST00000600868 SPP2Q13103 211 aa16.8■□□□□ 0.28
UPF1-211ENST00000600868 PPIL2Q13356 520 aa16.8■□□□□ 0.28
UPF1-211ENST00000600868 APOA5Q6Q788 366 aa16.8■□□□□ 0.28
UPF1-211ENST00000600868 SYNE3Q6ZMZ3 975 aa16.8■□□□□ 0.28
UPF1-211ENST00000600868 CATIPQ7Z7H3 387 aa16.8■□□□□ 0.28
UPF1-211ENST00000600868 ZNF654Q8IZM8 581 aa16.8■□□□□ 0.28
UPF1-211ENST00000600868 PNMA1Q8ND90 353 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms