RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 ZNF532Q9HCE3 1301 aa20.81■□□□□ 0.92
UPF1-210ENST00000600689 RNF225M0QZC1 329 aaPredicted RBP20.81■□□□□ 0.92
UPF1-210ENST00000600689 MORC3Q14149 939 aa20.81■□□□□ 0.92
UPF1-210ENST00000600689 GREM2Q9H772 168 aa20.81■□□□□ 0.92
UPF1-210ENST00000600689 ZSWIM5Q9P217 1185 aa20.81■□□□□ 0.92
UPF1-210ENST00000600689 DACH1Q9UI36 760 aa20.81■□□□□ 0.92
UPF1-210ENST00000600689 FBXO2Q9UK22 296 aaPredicted RBP20.81■□□□□ 0.92
UPF1-210ENST00000600689 WWC3Q9ULE0 1092 aa20.81■□□□□ 0.92
UPF1-210ENST00000600689 EXOC5O00471 708 aa20.8■□□□□ 0.92
UPF1-210ENST00000600689 MRPS25P82663 173 aaKnown RBP20.8■□□□□ 0.92
UPF1-210ENST00000600689 SLC20A2Q08357 652 aa20.8■□□□□ 0.92
UPF1-210ENST00000600689 IFIT5Q13325 482 aaKnown RBP20.8■□□□□ 0.92
UPF1-210ENST00000600689 NLRP10Q86W26 655 aa20.8■□□□□ 0.92
UPF1-210ENST00000600689 PIH1D3Q9NQM4 214 aaKnown RBP20.8■□□□□ 0.92
UPF1-210ENST00000600689 L1RE1Q9UN81 338 aa20.8■□□□□ 0.92
UPF1-210ENST00000600689 CTNND2Q9UQB3 1225 aa20.8■□□□□ 0.92
UPF1-210ENST00000600689 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.8■□□□□ 0.92
UPF1-210ENST00000600689 NTRK3Q16288 839 aa20.8■□□□□ 0.92
UPF1-210ENST00000600689 TAB2Q9NYJ8 693 aa20.8■□□□□ 0.92
UPF1-210ENST00000600689 BCL9O00512 1426 aa20.8■□□□□ 0.92
UPF1-210ENST00000600689 SYNRGQ9UMZ2 1314 aa20.8■□□□□ 0.92
UPF1-210ENST00000600689 A0A087X0B3 334 aa20.79■□□□□ 0.92
UPF1-210ENST00000600689 N4BP3O15049 544 aa20.79■□□□□ 0.92
UPF1-210ENST00000600689 PRDM1O75626 825 aa20.79■□□□□ 0.92
UPF1-210ENST00000600689 ADAMTS2O95450 1211 aa20.79■□□□□ 0.92
UPF1-210ENST00000600689 ZFYP08048 801 aaPredicted RBP20.79■□□□□ 0.92
UPF1-210ENST00000600689 TRIM28Q13263 835 aaKnown RBP20.79■□□□□ 0.92
UPF1-210ENST00000600689 AIDAQ96BJ3 306 aa20.79■□□□□ 0.92
UPF1-210ENST00000600689 PLCD1P51178 756 aa20.79■□□□□ 0.92
UPF1-210ENST00000600689 DISP2A7MBM2 1401 aa20.79■□□□□ 0.92
UPF1-210ENST00000600689 LY9Q9HBG7 655 aa20.79■□□□□ 0.92
UPF1-210ENST00000600689 CSF1RP07333 972 aa20.78■□□□□ 0.92
UPF1-210ENST00000600689 ITGA6P23229 1130 aa20.78■□□□□ 0.92
UPF1-210ENST00000600689 LDHAL6AQ6ZMR3 332 aa20.78■□□□□ 0.92
UPF1-210ENST00000600689 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.78■□□□□ 0.928e-8■■■□□ 18.7
UPF1-210ENST00000600689 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.78■□□□□ 0.92
UPF1-210ENST00000600689 CNNM1Q9NRU3 951 aa20.78■□□□□ 0.92
UPF1-210ENST00000600689 A0A1B0GTH6 734 aa20.78■□□□□ 0.92
UPF1-210ENST00000600689 PRKAB2O43741 272 aa20.78■□□□□ 0.92
UPF1-210ENST00000600689 PTPREP23469 700 aa20.78■□□□□ 0.92
UPF1-210ENST00000600689 TTLL11Q8NHH1 800 aa20.78■□□□□ 0.92
UPF1-210ENST00000600689 IGDCC4Q8TDY8 1250 aa20.78■□□□□ 0.92
UPF1-210ENST00000600689 NAPGQ99747 312 aaPredicted RBP20.78■□□□□ 0.92
UPF1-210ENST00000600689 MFAP3LO75121 409 aa20.77■□□□□ 0.92
UPF1-210ENST00000600689 GYPCP04921 128 aa20.77■□□□□ 0.92
UPF1-210ENST00000600689 FILIP1LQ4L180 1135 aa20.77■□□□□ 0.92
UPF1-210ENST00000600689 GOLGA6L1Q8N7Z2 621 aa20.77■□□□□ 0.92
UPF1-210ENST00000600689 NAPBQ9H115 298 aa20.77■□□□□ 0.92
UPF1-210ENST00000600689 ERVK-24P63145 666 aa20.77■□□□□ 0.92
UPF1-210ENST00000600689 ACSBG1Q96GR2 724 aa20.77■□□□□ 0.92
UPF1-210ENST00000600689 CHP1Q99653 195 aa20.77■□□□□ 0.92
UPF1-210ENST00000600689 ARMT1Q9H993 441 aa20.77■□□□□ 0.92
UPF1-210ENST00000600689 VPS54Q9P1Q0 977 aa20.77■□□□□ 0.92
UPF1-210ENST00000600689 TRMT112Q9UI30 125 aaKnown RBP20.77■□□□□ 0.92
UPF1-210ENST00000600689 EIF3CLB5ME19 914 aaKnown RBP20.76■□□□□ 0.91
UPF1-210ENST00000600689 TRIM22Q8IYM9 498 aa20.76■□□□□ 0.91
UPF1-210ENST00000600689 EIF3CQ99613 913 aaKnown RBP20.76■□□□□ 0.91
UPF1-210ENST00000600689 ACTN4O43707 911 aaKnown RBP20.76■□□□□ 0.91
UPF1-210ENST00000600689 MMP1P03956 469 aa20.76■□□□□ 0.91
UPF1-210ENST00000600689 DPYDQ12882 1025 aa20.76■□□□□ 0.91
UPF1-210ENST00000600689 NOM1Q5C9Z4 860 aaKnown RBP20.76■□□□□ 0.91
UPF1-210ENST00000600689 FBXL16Q8N461 479 aa20.76■□□□□ 0.91
UPF1-210ENST00000600689 DRC1Q96MC2 740 aa20.76■□□□□ 0.91
UPF1-210ENST00000600689 PPARDQ03181 441 aa20.76■□□□□ 0.91
UPF1-210ENST00000600689 ZNF174Q15697 407 aa20.76■□□□□ 0.91
UPF1-210ENST00000600689 TTC19Q6DKK2 380 aaPredicted RBP20.76■□□□□ 0.91
UPF1-210ENST00000600689 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.76■□□□□ 0.91
UPF1-210ENST00000600689 PACS2Q86VP3 889 aa20.76■□□□□ 0.91
UPF1-210ENST00000600689 IRS4O14654 1257 aaPredicted RBP20.75■□□□□ 0.91
UPF1-210ENST00000600689 RNF40O75150 1001 aa20.75■□□□□ 0.91
UPF1-210ENST00000600689 RTN1Q16799 776 aa20.75■□□□□ 0.91
UPF1-210ENST00000600689 LRRC31Q6UY01 552 aa20.75■□□□□ 0.91
UPF1-210ENST00000600689 PANX2Q96RD6 677 aa20.75■□□□□ 0.91
UPF1-210ENST00000600689 SMIM22K7EJ46 135 aa20.75■□□□□ 0.91
UPF1-210ENST00000600689 ADD2P35612 726 aa20.75■□□□□ 0.91
UPF1-210ENST00000600689 PHKA1P46020 1223 aa20.75■□□□□ 0.91
UPF1-210ENST00000600689 EARS2Q5JPH6 523 aaKnown RBP20.75■□□□□ 0.91
UPF1-210ENST00000600689 PLA2G12BQ9BX93 195 aa20.75■□□□□ 0.91
UPF1-210ENST00000600689 TACC3Q9Y6A5 838 aa20.75■□□□□ 0.91
UPF1-210ENST00000600689 WNT7AO00755 349 aa20.74■□□□□ 0.91
UPF1-210ENST00000600689 MBD4O95243 580 aa20.74■□□□□ 0.91
UPF1-210ENST00000600689 KRT9P35527 623 aa20.74■□□□□ 0.91
UPF1-210ENST00000600689 GTF2A1P52655 376 aaPredicted RBP20.74■□□□□ 0.91
UPF1-210ENST00000600689 DNAJC21Q5F1R6 531 aaKnown RBP20.74■□□□□ 0.91
UPF1-210ENST00000600689 SPATA1Q5VX52 437 aa20.74■□□□□ 0.91
UPF1-210ENST00000600689 RRAGBQ5VZM2 374 aa20.74■□□□□ 0.91
UPF1-210ENST00000600689 DZIP3Q86Y13 1208 aaKnown RBP20.74■□□□□ 0.91
UPF1-210ENST00000600689 ADD3Q9UEY8 706 aaKnown RBP20.74■□□□□ 0.91
UPF1-210ENST00000600689 ROBO1Q9Y6N7 1651 aa20.74■□□□□ 0.91
UPF1-210ENST00000600689 SARSP49591 514 aaKnown RBP20.74■□□□□ 0.91
UPF1-210ENST00000600689 MIGA1Q8NAN2 632 aa20.74■□□□□ 0.91
UPF1-210ENST00000600689 SYMPKQ92797 1274 aaKnown RBP20.74■□□□□ 0.91
UPF1-210ENST00000600689 MYO6Q9UM54 1294 aa20.74■□□□□ 0.91
UPF1-210ENST00000600689 RIPOR2Q9Y4F9 1068 aa20.74■□□□□ 0.91
UPF1-210ENST00000600689 IVLP07476 585 aa20.74■□□□□ 0.91
UPF1-210ENST00000600689 CTSWP56202 376 aa20.74■□□□□ 0.91
UPF1-210ENST00000600689 TTC31Q49AM3 519 aaPredicted RBP20.74■□□□□ 0.91
UPF1-210ENST00000600689 POLD4Q9HCU8 107 aa20.74■□□□□ 0.91
UPF1-210ENST00000600689 RIC1Q4ADV7 1423 aa20.73■□□□□ 0.91
UPF1-210ENST00000600689 APTXQ7Z2E3 356 aaKnown RBP20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms