RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 MTMR2Q13614 643 aa15.18■□□□□ 0.02
UPF1-208ENST00000600012 CASC1Q6TDU7 716 aa15.18■□□□□ 0.02
UPF1-208ENST00000600012 METTL16Q86W50 562 aaKnown RBP15.18■□□□□ 0.02
UPF1-208ENST00000600012 FOXP4Q8IVH2 680 aaPredicted RBP15.18■□□□□ 0.02
UPF1-208ENST00000600012 MAPKAPK5Q8IW41 473 aa15.18■□□□□ 0.02
UPF1-208ENST00000600012 CRACR2BQ8N4Y2 399 aaPredicted RBP15.18■□□□□ 0.02
UPF1-208ENST00000600012 TGFBRAP1Q8WUH2 860 aa15.18■□□□□ 0.02
UPF1-208ENST00000600012 TRIM34Q9BYJ4 488 aa15.18■□□□□ 0.02
UPF1-208ENST00000600012 TMOD4Q9NZQ9 345 aa15.18■□□□□ 0.02
UPF1-208ENST00000600012 C19orf81C9J6K1 198 aa15.17■□□□□ 0.02
UPF1-208ENST00000600012 HOXA7P31268 230 aaPredicted RBP15.17■□□□□ 0.02
UPF1-208ENST00000600012 ADGRA1Q86SQ6 560 aa15.17■□□□□ 0.02
UPF1-208ENST00000600012 KBTBD3Q8NAB2 608 aa15.17■□□□□ 0.02
UPF1-208ENST00000600012 ANKLE1Q8NAG6 615 aa15.17■□□□□ 0.02
UPF1-208ENST00000600012 DNAJC18Q9H819 358 aa15.17■□□□□ 0.02
UPF1-208ENST00000600012 DIAPH3Q9NSV4 1193 aa15.17■□□□□ 0.02
UPF1-208ENST00000600012 GJD2Q9UKL4 321 aa15.17■□□□□ 0.02
UPF1-208ENST00000600012 A0A1W2PPC1 479 aa15.16■□□□□ 0.02
UPF1-208ENST00000600012 CHGBP05060 677 aa15.16■□□□□ 0.02
UPF1-208ENST00000600012 HLA-DOAP06340 250 aa15.16■□□□□ 0.02
UPF1-208ENST00000600012 NMIQ13287 307 aaPredicted RBP15.16■□□□□ 0.02
UPF1-208ENST00000600012 NECAB2Q7Z6G3 386 aa15.16■□□□□ 0.02
UPF1-208ENST00000600012 PAWRQ96IZ0 340 aaKnown RBP15.16■□□□□ 0.02
UPF1-208ENST00000600012 ESYT1Q9BSJ8 1104 aa15.16■□□□□ 0.02
UPF1-208ENST00000600012 IL25Q9H293 177 aa15.16■□□□□ 0.02
UPF1-208ENST00000600012 PIH1D3Q9NQM4 214 aaKnown RBP15.16■□□□□ 0.02
UPF1-208ENST00000600012 PALD1Q9ULE6 856 aa15.16■□□□□ 0.02
UPF1-208ENST00000600012 ZBTB21Q9ULJ3 1066 aa15.16■□□□□ 0.02
UPF1-208ENST00000600012 RPTORQ8N122 1335 aa15.16■□□□□ 0.02
UPF1-208ENST00000600012 USP17L10C9JJH3 530 aa15.15■□□□□ 0.02
UPF1-208ENST00000600012 HERVK_113P62684 666 aa15.15■□□□□ 0.02
UPF1-208ENST00000600012 JAG1P78504 1218 aa15.15■□□□□ 0.02
UPF1-208ENST00000600012 CWC27Q6UX04 472 aaKnown RBP15.15■□□□□ 0.02
UPF1-208ENST00000600012 CERS3Q8IU89 383 aa15.15■□□□□ 0.02
UPF1-208ENST00000600012 FAM227BQ96M60 508 aa15.15■□□□□ 0.02
UPF1-208ENST00000600012 HMX1Q9NP08 348 aaPredicted RBP15.15■□□□□ 0.02
UPF1-208ENST00000600012 DDX60LQ5H9U9 1706 aaKnown RBP15.14■□□□□ 0.01
UPF1-208ENST00000600012 RANBP2P49792 3224 aaKnown RBP15.14■□□□□ 0.01
UPF1-208ENST00000600012 A0A0D9SFI3 127 aa15.14■□□□□ 0.01
UPF1-208ENST00000600012 HIP1O00291 1037 aa15.14■□□□□ 0.01
UPF1-208ENST00000600012 GDF11O95390 407 aa15.14■□□□□ 0.01
UPF1-208ENST00000600012 SLFNL1Q499Z3 407 aa15.14■□□□□ 0.01
UPF1-208ENST00000600012 GPRC5AQ8NFJ5 357 aa15.14■□□□□ 0.01
UPF1-208ENST00000600012 DIS3LQ8TF46 1054 aaKnown RBP15.14■□□□□ 0.01
UPF1-208ENST00000600012 GTF3C2Q8WUA4 911 aaPredicted RBP15.14■□□□□ 0.01
UPF1-208ENST00000600012 SOCS4Q8WXH5 440 aa15.14■□□□□ 0.01
UPF1-208ENST00000600012 TRIB2Q92519 343 aa15.14■□□□□ 0.01
UPF1-208ENST00000600012 P2RX7Q99572 595 aaKnown RBP15.14■□□□□ 0.01
UPF1-208ENST00000600012 NUDT12Q9BQG2 462 aa15.14■□□□□ 0.01
UPF1-208ENST00000600012 SAP30BPQ9UHR5 308 aaKnown RBP15.14■□□□□ 0.01
UPF1-208ENST00000600012 IDH1O75874 414 aaKnown RBP15.13■□□□□ 0.01
UPF1-208ENST00000600012 XRCC5P13010 732 aaKnown RBP15.13■□□□□ 0.01
UPF1-208ENST00000600012 CYP7A1P22680 504 aa15.13■□□□□ 0.01
UPF1-208ENST00000600012 MAPK4P31152 587 aa15.13■□□□□ 0.01
UPF1-208ENST00000600012 TRIM32Q13049 653 aa15.13■□□□□ 0.01
UPF1-208ENST00000600012 TTF1Q15361 905 aaPredicted RBP15.13■□□□□ 0.01
UPF1-208ENST00000600012 TXNRD2Q9NNW7 524 aa15.13■□□□□ 0.01
UPF1-208ENST00000600012 SGSM2O43147 1006 aa15.12■□□□□ 0.01
UPF1-208ENST00000600012 CYP2B6P20813 491 aa15.12■□□□□ 0.01
UPF1-208ENST00000600012 DYNLL1P63167 89 aaKnown RBP15.12■□□□□ 0.01
UPF1-208ENST00000600012 SHROOM1Q2M3G4 852 aaPredicted RBP15.12■□□□□ 0.01
UPF1-208ENST00000600012 MAP3K21Q5TCX8 1036 aa15.12■□□□□ 0.01
UPF1-208ENST00000600012 TMED8Q6PL24 325 aaPredicted RBP15.12■□□□□ 0.01
UPF1-208ENST00000600012 USP17L2Q6R6M4 530 aa15.12■□□□□ 0.01
UPF1-208ENST00000600012 TRMT44Q8IYL2 757 aaKnown RBP15.12■□□□□ 0.01
UPF1-208ENST00000600012 NBPF3Q9H094 633 aa15.12■□□□□ 0.01
UPF1-208ENST00000600012 UPF2Q9HAU5 1272 aaKnown RBP15.12■□□□□ 0.01
UPF1-208ENST00000600012 RBM19Q9Y4C8 960 aaKnown RBP15.12■□□□□ 0.01
UPF1-208ENST00000600012 RNF113AO15541 343 aaKnown RBP15.11■□□□□ 0.01
UPF1-208ENST00000600012 PRKAR2AP13861 404 aaKnown RBP15.11■□□□□ 0.01
UPF1-208ENST00000600012 USP5P45974 858 aa15.11■□□□□ 0.01
UPF1-208ENST00000600012 ERVK-9P63128 1117 aa15.11■□□□□ 0.01
UPF1-208ENST00000600012 ERVK-24P63145 666 aa15.11■□□□□ 0.01
UPF1-208ENST00000600012 CCAR1Q8IX12 1150 aaKnown RBP15.11■□□□□ 0.01
UPF1-208ENST00000600012 RUFY2Q8WXA3 655 aa15.11■□□□□ 0.01
UPF1-208ENST00000600012 SEC62Q99442 399 aaKnown RBP15.11■□□□□ 0.01
UPF1-208ENST00000600012 EHD4Q9H223 541 aa15.11■□□□□ 0.01
UPF1-208ENST00000600012 EMILIN3Q9NT22 766 aa15.11■□□□□ 0.01
UPF1-208ENST00000600012 RBPJLQ9UBG7 517 aa15.11■□□□□ 0.01
UPF1-208ENST00000600012 OGDHLQ9ULD0 1010 aa15.11■□□□□ 0.01
UPF1-208ENST00000600012 SZT2Q5T011 3432 aa15.11■□□□□ 0.01
UPF1-208ENST00000600012 PEX10O60683 326 aa15.1■□□□□ 0.01
UPF1-208ENST00000600012 REC8O95072 547 aa15.1■□□□□ 0.01
UPF1-208ENST00000600012 GH2P01242 217 aa15.1■□□□□ 0.01
UPF1-208ENST00000600012 ZKSCAN1P17029 563 aaPredicted RBP15.1■□□□□ 0.01
UPF1-208ENST00000600012 ADD2P35612 726 aa15.1■□□□□ 0.01
UPF1-208ENST00000600012 TATDN1Q6P1N9 297 aa15.1■□□□□ 0.01
UPF1-208ENST00000600012 CCDC129Q6ZRS4 1044 aa15.1■□□□□ 0.01
UPF1-208ENST00000600012 C7orf61Q8IZ16 206 aa15.1■□□□□ 0.01
UPF1-208ENST00000600012 MAGEB6Q8N7X4 407 aa15.1■□□□□ 0.01
UPF1-208ENST00000600012 MIGA1Q8NAN2 632 aa15.1■□□□□ 0.01
UPF1-208ENST00000600012 C12orf42Q96LP6 360 aa15.1■□□□□ 0.01
UPF1-208ENST00000600012 FEZ1Q99689 392 aa15.1■□□□□ 0.01
UPF1-208ENST00000600012 PAGR1Q9BTK6 254 aa15.1■□□□□ 0.01
UPF1-208ENST00000600012 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.1■□□□□ 0.012e-6■■■■□ 21.3
UPF1-208ENST00000600012 ANO2Q9NQ90 1003 aa15.1■□□□□ 0.01
UPF1-208ENST00000600012 SERPINB13Q9UIV8 391 aa15.1■□□□□ 0.01
UPF1-208ENST00000600012 RAD50Q92878 1312 aa15.1■□□□□ 0.01
UPF1-208ENST00000600012 NAV1Q8NEY1 1877 aa15.1■□□□□ 0.01
UPF1-208ENST00000600012 ZFYP08048 801 aaPredicted RBP15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms