RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 PDE4BQ07343 736 aa21.59■■□□□ 1.05
LIG1-216ENST00000598938 KIAA1211Q6ZU35 1233 aa21.59■■□□□ 1.05
LIG1-216ENST00000598938 STK11IPQ8N1F8 1099 aa21.59■■□□□ 1.05
LIG1-216ENST00000598938 CCDC17Q96LX7 622 aa21.59■■□□□ 1.05
LIG1-216ENST00000598938 PTPN18Q99952 460 aa21.59■■□□□ 1.05
LIG1-216ENST00000598938 NBPF3Q9H094 633 aa21.59■■□□□ 1.05
LIG1-216ENST00000598938 ZNF287Q9HBT7 754 aa21.59■■□□□ 1.05
LIG1-216ENST00000598938 TACC3Q9Y6A5 838 aa21.59■■□□□ 1.05
LIG1-216ENST00000598938 U3KPZ7 1027 aaPredicted RBP21.59■■□□□ 1.05
LIG1-216ENST00000598938 PHIPQ8WWQ0 1821 aa21.58■■□□□ 1.05
LIG1-216ENST00000598938 USP17L5A8MUK1 530 aa21.58■■□□□ 1.05
LIG1-216ENST00000598938 ZNF213O14771 459 aa21.58■■□□□ 1.05
LIG1-216ENST00000598938 FGRP09769 529 aa21.58■■□□□ 1.05
LIG1-216ENST00000598938 HAND2P61296 217 aa21.58■■□□□ 1.05
LIG1-216ENST00000598938 CCDC84Q86UT8 332 aaPredicted RBP21.58■■□□□ 1.05
LIG1-216ENST00000598938 TMEM106CQ9BVX2 250 aa21.58■■□□□ 1.05
LIG1-216ENST00000598938 TBC1D2Q9BYX2 928 aa21.58■■□□□ 1.05
LIG1-216ENST00000598938 MKNK2Q9HBH9 465 aa21.58■■□□□ 1.05
LIG1-216ENST00000598938 ZHX2Q9Y6X8 837 aa21.58■■□□□ 1.05
LIG1-216ENST00000598938 MYH8P13535 1937 aa21.58■■□□□ 1.04
LIG1-216ENST00000598938 IRF6O14896 467 aa21.57■■□□□ 1.04
LIG1-216ENST00000598938 AKR1B1P15121 316 aa21.57■■□□□ 1.04
LIG1-216ENST00000598938 GUCY1A2P33402 732 aa21.57■■□□□ 1.04
LIG1-216ENST00000598938 IMMTQ16891 758 aaKnown RBP21.57■■□□□ 1.04
LIG1-216ENST00000598938 NBPF11Q86T75 865 aa21.57■■□□□ 1.04
LIG1-216ENST00000598938 TBC1D10CQ8IV04 446 aa21.57■■□□□ 1.04
LIG1-216ENST00000598938 ZNF333Q96JL9 665 aa21.57■■□□□ 1.04
LIG1-216ENST00000598938 MS4A4AQ96JQ5 239 aa21.57■■□□□ 1.04
LIG1-216ENST00000598938 CABP5Q9NP86 173 aa21.57■■□□□ 1.04
LIG1-216ENST00000598938 ANO2Q9NQ90 1003 aa21.57■■□□□ 1.04
LIG1-216ENST00000598938 KCNH4Q9UQ05 1017 aa21.57■■□□□ 1.04
LIG1-216ENST00000598938 AFG3L2Q9Y4W6 797 aa21.57■■□□□ 1.04
LIG1-216ENST00000598938 ORC4O43929 436 aa21.56■■□□□ 1.04
LIG1-216ENST00000598938 PRDM1O75626 825 aa21.56■■□□□ 1.04
LIG1-216ENST00000598938 TMEM179Q6ZVK1 233 aa21.56■■□□□ 1.04
LIG1-216ENST00000598938 STAG1Q8WVM7 1258 aa21.56■■□□□ 1.04
LIG1-216ENST00000598938 RBM8AQ9Y5S9 174 aaKnown RBP21.56■■□□□ 1.04
LIG1-216ENST00000598938 MPHOSPH10O00566 681 aaKnown RBP21.55■■□□□ 1.04
LIG1-216ENST00000598938 CXCL11O14625 94 aa21.55■■□□□ 1.04
LIG1-216ENST00000598938 PCP11498 1178 aaKnown RBP21.55■■□□□ 1.04
LIG1-216ENST00000598938 EN2P19622 333 aaPredicted RBP21.55■■□□□ 1.04
LIG1-216ENST00000598938 GTF2A2P52657 109 aa21.55■■□□□ 1.04
LIG1-216ENST00000598938 AKNAD1Q5T1N1 836 aa21.55■■□□□ 1.04
LIG1-216ENST00000598938 WDR18Q9BV38 432 aa21.55■■□□□ 1.04
LIG1-216ENST00000598938 ZFYVE28Q9HCC9 887 aa21.55■■□□□ 1.04
LIG1-216ENST00000598938 INCENPQ9NQS7 918 aa21.55■■□□□ 1.04
LIG1-216ENST00000598938 GREB1LQ9C091 1923 aaPredicted RBP21.55■■□□□ 1.04
LIG1-216ENST00000598938 PLIN4Q96Q06 1357 aa21.54■■□□□ 1.04
LIG1-216ENST00000598938 SEPT2Q15019 361 aa21.54■■□□□ 1.04
LIG1-216ENST00000598938 RAB3GAP1Q15042 981 aa21.54■■□□□ 1.04
LIG1-216ENST00000598938 ZNF444Q8N0Y2 327 aaPredicted RBP21.54■■□□□ 1.04
LIG1-216ENST00000598938 ZNF280CQ8ND82 737 aa21.54■■□□□ 1.04
LIG1-216ENST00000598938 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.54■■□□□ 1.04
LIG1-216ENST00000598938 RNF41Q9H4P4 317 aaPredicted RBP21.54■■□□□ 1.04
LIG1-216ENST00000598938 AS3MTQ9HBK9 375 aa21.54■■□□□ 1.04
LIG1-216ENST00000598938 ZCCHC17Q9NP64 241 aaKnown RBP21.54■■□□□ 1.04
LIG1-216ENST00000598938 CYP21A2P08686 494 aa21.53■■□□□ 1.04
LIG1-216ENST00000598938 SNAPC2Q13487 334 aa21.53■■□□□ 1.04
LIG1-216ENST00000598938 TAF1CQ15572 869 aaPredicted RBP21.53■■□□□ 1.04
LIG1-216ENST00000598938 SLC9C1Q4G0N8 1177 aa21.53■■□□□ 1.04
LIG1-216ENST00000598938 MFSD6Q6ZSS7 791 aa21.53■■□□□ 1.04
LIG1-216ENST00000598938 IGKV6D-41A0A0C4DH26 115 aa21.52■■□□□ 1.04
LIG1-216ENST00000598938 A0A0G2JLL6 359 aaPredicted RBP21.52■■□□□ 1.04
LIG1-216ENST00000598938 FXR1P51114 621 aaKnown RBP eCLIP21.52■■□□□ 1.04
LIG1-216ENST00000598938 SPP2Q13103 211 aa21.52■■□□□ 1.04
LIG1-216ENST00000598938 PRRT2Q7Z6L0 340 aaPredicted RBP21.52■■□□□ 1.04
LIG1-216ENST00000598938 BRI3BPQ8WY22 251 aa21.52■■□□□ 1.04
LIG1-216ENST00000598938 NEDD4P46934 1319 aa21.52■■□□□ 1.03
LIG1-216ENST00000598938 CCL15-CCL14A0A0B4J2E2 113 aa21.51■■□□□ 1.03
LIG1-216ENST00000598938 TRIM75PA6NK02 468 aa21.51■■□□□ 1.03
LIG1-216ENST00000598938 REC8O95072 547 aa21.51■■□□□ 1.03
LIG1-216ENST00000598938 GNRH1P01148 92 aa21.51■■□□□ 1.03
LIG1-216ENST00000598938 CETPP11597 493 aa21.51■■□□□ 1.03
LIG1-216ENST00000598938 CAP1Q01518 475 aa21.51■■□□□ 1.03
LIG1-216ENST00000598938 TFAP4Q01664 338 aa21.51■■□□□ 1.03
LIG1-216ENST00000598938 MOGSQ13724 837 aa21.51■■□□□ 1.03
LIG1-216ENST00000598938 NECTIN1Q15223 517 aa21.51■■□□□ 1.03
LIG1-216ENST00000598938 CCL15Q16663 113 aa21.51■■□□□ 1.03
LIG1-216ENST00000598938 NEDD1Q8NHV4 660 aa21.51■■□□□ 1.03
LIG1-216ENST00000598938 CEP290O15078 2479 aa21.5■■□□□ 1.03
LIG1-216ENST00000598938 TSPY3P0CV98 308 aa21.5■■□□□ 1.03
LIG1-216ENST00000598938 TSPY8P0CW00 308 aa21.5■■□□□ 1.03
LIG1-216ENST00000598938 NT5C2P49902 561 aa21.5■■□□□ 1.03
LIG1-216ENST00000598938 ICA1Q05084 483 aa21.5■■□□□ 1.03
LIG1-216ENST00000598938 SH3D19Q5HYK7 790 aa21.5■■□□□ 1.03
LIG1-216ENST00000598938 FAM47AQ5JRC9 791 aa21.5■■□□□ 1.03
LIG1-216ENST00000598938 CLEC10AQ8IUN9 316 aa21.5■■□□□ 1.03
LIG1-216ENST00000598938 SIAH1Q8IUQ4 282 aa21.5■■□□□ 1.03
LIG1-216ENST00000598938 KANSL2Q9H9L4 492 aa21.5■■□□□ 1.03
LIG1-216ENST00000598938 PTCH2Q9Y6C5 1203 aa21.5■■□□□ 1.03
LIG1-216ENST00000598938 TAF6LQ9Y6J9 622 aa21.5■■□□□ 1.03
LIG1-216ENST00000598938 PTPRFP10586 1907 aa21.49■■□□□ 1.03
LIG1-216ENST00000598938 TSPY2A6NKD2 308 aa21.49■■□□□ 1.03
LIG1-216ENST00000598938 USP17L10C9JJH3 530 aa21.49■■□□□ 1.03
LIG1-216ENST00000598938 SLC27A2O14975 620 aa21.49■■□□□ 1.03
LIG1-216ENST00000598938 RANBP6O60518 1105 aaKnown RBP21.49■■□□□ 1.03
LIG1-216ENST00000598938 BACE1P56817 501 aa21.49■■□□□ 1.03
LIG1-216ENST00000598938 RRP12Q5JTH9 1297 aaKnown RBP21.49■■□□□ 1.03
LIG1-216ENST00000598938 CREB3L3Q68CJ9 461 aa21.49■■□□□ 1.03
LIG1-216ENST00000598938 NKX2-3Q8TAU0 364 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms