RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 TMEM179Q6ZVK1 233 aa18.08■□□□□ 0.48
UPF1-206ENST00000598471 SPRYD3Q8NCJ5 442 aa18.08■□□□□ 0.48
UPF1-206ENST00000598471 ANKS1AQ92625 1134 aa18.08■□□□□ 0.48
UPF1-206ENST00000598471 STX8Q9UNK0 236 aa18.08■□□□□ 0.48
UPF1-206ENST00000598471 GOLGA8AA7E2F4 631 aa18.07■□□□□ 0.48
UPF1-206ENST00000598471 NMT2O60551 498 aa18.07■□□□□ 0.48
UPF1-206ENST00000598471 DDAH1O94760 285 aa18.07■□□□□ 0.48
UPF1-206ENST00000598471 CPLX2Q6PUV4 134 aaKnown RBP18.07■□□□□ 0.48
UPF1-206ENST00000598471 MICU3Q86XE3 530 aa18.07■□□□□ 0.48
UPF1-206ENST00000598471 ZNF654Q8IZM8 581 aa18.07■□□□□ 0.48
UPF1-206ENST00000598471 NECAB1Q8N987 351 aa18.07■□□□□ 0.48
UPF1-206ENST00000598471 IL17RBQ9NRM6 502 aa18.07■□□□□ 0.48
UPF1-206ENST00000598471 SCAF8Q9UPN6 1271 aaKnown RBP18.07■□□□□ 0.48
UPF1-206ENST00000598471 IGKV6D-41A0A0C4DH26 115 aa18.06■□□□□ 0.48
UPF1-206ENST00000598471 CCDC196A0A1B0GTZ2 297 aa18.06■□□□□ 0.48
UPF1-206ENST00000598471 TOP1P11387 765 aaKnown RBP18.06■□□□□ 0.48
UPF1-206ENST00000598471 PPP2R5BQ15173 497 aa18.06■□□□□ 0.48
UPF1-206ENST00000598471 MIGA2Q7L4E1 593 aa18.06■□□□□ 0.48
UPF1-206ENST00000598471 KRT26Q7Z3Y9 468 aa18.06■□□□□ 0.48
UPF1-206ENST00000598471 CDAN1Q8IWY9 1227 aa18.06■□□□□ 0.48
UPF1-206ENST00000598471 CEP95Q96GE4 821 aa18.06■□□□□ 0.48
UPF1-206ENST00000598471 ZNF341Q9BYN7 854 aa18.06■□□□□ 0.48
UPF1-206ENST00000598471 SENP2Q9HC62 589 aa18.06■□□□□ 0.48
UPF1-206ENST00000598471 CWC22Q9HCG8 908 aaKnown RBP18.06■□□□□ 0.48
UPF1-206ENST00000598471 FOXD4L1Q9NU39 408 aa18.06■□□□□ 0.48
UPF1-206ENST00000598471 GINM1Q9NU53 330 aa18.06■□□□□ 0.48
UPF1-206ENST00000598471 MTMR4Q9NYA4 1195 aa18.06■□□□□ 0.48
UPF1-206ENST00000598471 CLEC11AQ9Y240 323 aa18.06■□□□□ 0.48
UPF1-206ENST00000598471 NID2Q14112 1375 aa18.05■□□□□ 0.48
UPF1-206ENST00000598471 CPLX1O14810 134 aa18.05■□□□□ 0.48
UPF1-206ENST00000598471 GDF11O95390 407 aa18.05■□□□□ 0.48
UPF1-206ENST00000598471 TTLL1O95922 423 aa18.05■□□□□ 0.48
UPF1-206ENST00000598471 SLURP2P0DP57 97 aa18.05■□□□□ 0.48
UPF1-206ENST00000598471 C1QTNF8P60827 252 aa18.05■□□□□ 0.48
UPF1-206ENST00000598471 CCT2P78371 535 aaKnown RBP18.05■□□□□ 0.48
UPF1-206ENST00000598471 SCRN1Q12765 414 aa18.05■□□□□ 0.48
UPF1-206ENST00000598471 NBPF12Q5TAG4 269 aaPredicted RBP18.05■□□□□ 0.48
UPF1-206ENST00000598471 RCSD1Q6JBY9 416 aa18.05■□□□□ 0.48
UPF1-206ENST00000598471 RBM46Q8TBY0 533 aaKnown RBP18.05■□□□□ 0.48
UPF1-206ENST00000598471 LLPHQ9BRT6 129 aaKnown RBP18.05■□□□□ 0.48
UPF1-206ENST00000598471 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.05■□□□□ 0.48
UPF1-206ENST00000598471 KANSL2Q9H9L4 492 aa18.05■□□□□ 0.48
UPF1-206ENST00000598471 SMC3Q9UQE7 1217 aa18.05■□□□□ 0.48
UPF1-206ENST00000598471 CDKL5O76039 1030 aa18.04■□□□□ 0.48
UPF1-206ENST00000598471 GH2P01242 217 aa18.04■□□□□ 0.48
UPF1-206ENST00000598471 NF2P35240 595 aa18.04■□□□□ 0.48
UPF1-206ENST00000598471 NOVP48745 357 aa18.04■□□□□ 0.48
UPF1-206ENST00000598471 RTN1Q16799 776 aa18.04■□□□□ 0.48
UPF1-206ENST00000598471 PNMA1Q8ND90 353 aa18.04■□□□□ 0.48
UPF1-206ENST00000598471 CTCFLQ8NI51 663 aaPredicted RBP18.04■□□□□ 0.48
UPF1-206ENST00000598471 NUP133Q8WUM0 1156 aa18.04■□□□□ 0.48
UPF1-206ENST00000598471 HPS5Q9UPZ3 1129 aa18.04■□□□□ 0.48
UPF1-206ENST00000598471 KIF5BP33176 963 aa18.03■□□□□ 0.48
UPF1-206ENST00000598471 CAP2P40123 477 aa18.03■□□□□ 0.48
UPF1-206ENST00000598471 ICA1Q05084 483 aa18.03■□□□□ 0.48
UPF1-206ENST00000598471 RAB11FIP4Q86YS3 637 aa18.03■□□□□ 0.48
UPF1-206ENST00000598471 MAP3K14Q99558 947 aa18.03■□□□□ 0.48
UPF1-206ENST00000598471 TMEM47Q9BQJ4 181 aa18.03■□□□□ 0.48
UPF1-206ENST00000598471 MYL10Q9BUA6 226 aa18.03■□□□□ 0.48
UPF1-206ENST00000598471 RBM28Q9NW13 759 aaKnown RBP18.03■□□□□ 0.48
UPF1-206ENST00000598471 NYAP2Q9P242 653 aa18.03■□□□□ 0.48
UPF1-206ENST00000598471 ZBTB21Q9ULJ3 1066 aa18.03■□□□□ 0.48
UPF1-206ENST00000598471 KIF3AQ9Y496 699 aa18.03■□□□□ 0.48
UPF1-206ENST00000598471 GREB1LQ9C091 1923 aaPredicted RBP18.03■□□□□ 0.48
UPF1-206ENST00000598471 ADM5C9JUS6 153 aa18.02■□□□□ 0.48
UPF1-206ENST00000598471 ASNSP08243 561 aa18.02■□□□□ 0.48
UPF1-206ENST00000598471 HMGN5P82970 282 aaKnown RBP18.02■□□□□ 0.48
UPF1-206ENST00000598471 ATP2B2Q01814 1243 aa18.02■□□□□ 0.48
UPF1-206ENST00000598471 ST3GAL1Q11201 340 aa18.02■□□□□ 0.48
UPF1-206ENST00000598471 SEPT2Q15019 361 aa18.02■□□□□ 0.48
UPF1-206ENST00000598471 RAB3GAP1Q15042 981 aa18.02■□□□□ 0.48
UPF1-206ENST00000598471 MAP1SQ66K74 1059 aaPredicted RBP18.02■□□□□ 0.48
UPF1-206ENST00000598471 CHADLQ6NUI6 762 aa18.02■□□□□ 0.48
UPF1-206ENST00000598471 CDC37L1Q7L3B6 337 aa18.02■□□□□ 0.48
UPF1-206ENST00000598471 USP48Q86UV5 1035 aa18.02■□□□□ 0.48
UPF1-206ENST00000598471 LDHDQ86WU2 507 aa18.02■□□□□ 0.48
UPF1-206ENST00000598471 FANCBQ8NB91 859 aa18.02■□□□□ 0.48
UPF1-206ENST00000598471 NCOA5Q9HCD5 579 aaKnown RBP18.02■□□□□ 0.48
UPF1-206ENST00000598471 ARHGEF10LQ9HCE6 1279 aa18.02■□□□□ 0.48
UPF1-206ENST00000598471 CLIP2Q9UDT6 1046 aa18.02■□□□□ 0.48
UPF1-206ENST00000598471 CTNND1O60716 968 aaKnown RBP18.01■□□□□ 0.47
UPF1-206ENST00000598471 RXRAP19793 462 aa18.01■□□□□ 0.47
UPF1-206ENST00000598471 TROAPQ12815 778 aa18.01■□□□□ 0.47
UPF1-206ENST00000598471 CCDC144CPQ8IYA2 1237 aa18.01■□□□□ 0.47
UPF1-206ENST00000598471 SMC1BQ8NDV3 1235 aa18.01■□□□□ 0.47
UPF1-206ENST00000598471 SH2D4AQ9H788 454 aa18.01■□□□□ 0.47
UPF1-206ENST00000598471 CIZ1Q9ULV3 898 aaPredicted RBP18.01■□□□□ 0.47
UPF1-206ENST00000598471 SYNPO2Q9UMS6 1093 aa18.01■□□□□ 0.47
UPF1-206ENST00000598471 PHF20L1A8MW92 1017 aa18■□□□□ 0.47
UPF1-206ENST00000598471 EEF2P13639 858 aaKnown RBP18■□□□□ 0.47
UPF1-206ENST00000598471 GNAQP50148 359 aa18■□□□□ 0.47
UPF1-206ENST00000598471 RRP1BQ14684 758 aaKnown RBP18■□□□□ 0.47
UPF1-206ENST00000598471 PRAMEF18Q5VWM3 479 aa18■□□□□ 0.47
UPF1-206ENST00000598471 NSUN7Q8NE18 718 aaKnown RBP18■□□□□ 0.47
UPF1-206ENST00000598471 PTPDC1A2A3K4 754 aa17.99■□□□□ 0.47
UPF1-206ENST00000598471 PPP1R12BO60237 982 aaPredicted RBP17.99■□□□□ 0.47
UPF1-206ENST00000598471 ITGBL1O95965 494 aaPredicted RBP17.99■□□□□ 0.47
UPF1-206ENST00000598471 PDCP20941 246 aa17.99■□□□□ 0.47
UPF1-206ENST00000598471 GJB2P29033 226 aa17.99■□□□□ 0.47
UPF1-206ENST00000598471 GUCY1A2P33402 732 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms