RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 SSH3Q8TE77 659 aa20.12■□□□□ 0.81
SHKBP1-215ENST00000597649 GTF3C2Q8WUA4 911 aaPredicted RBP20.12■□□□□ 0.81
SHKBP1-215ENST00000597649 EDC3Q96F86 508 aaKnown RBP20.12■□□□□ 0.81
SHKBP1-215ENST00000597649 C12orf42Q96LP6 360 aa20.12■□□□□ 0.81
SHKBP1-215ENST00000597649 TLR7Q9NYK1 1049 aaKnown RBP20.12■□□□□ 0.81
SHKBP1-215ENST00000597649 RABGAP1Q9Y3P9 1069 aa20.12■□□□□ 0.81
SHKBP1-215ENST00000597649 USP17L15C9J2P7 530 aa20.11■□□□□ 0.81
SHKBP1-215ENST00000597649 USP17L13C9JLJ4 530 aa20.11■□□□□ 0.81
SHKBP1-215ENST00000597649 USP17L11C9JVI0 530 aa20.11■□□□□ 0.81
SHKBP1-215ENST00000597649 USP17L18D6R9N7 530 aa20.11■□□□□ 0.81
SHKBP1-215ENST00000597649 USP17L22D6RA61 530 aa20.11■□□□□ 0.81
SHKBP1-215ENST00000597649 USP17L17D6RBQ6 530 aa20.11■□□□□ 0.81
SHKBP1-215ENST00000597649 USP17L19D6RCP7 530 aa20.11■□□□□ 0.81
SHKBP1-215ENST00000597649 USP17L20D6RJB6 530 aa20.11■□□□□ 0.81
SHKBP1-215ENST00000597649 HLA-DOAP06340 250 aa20.11■□□□□ 0.81
SHKBP1-215ENST00000597649 USP17L24Q0WX57 530 aa20.11■□□□□ 0.81
SHKBP1-215ENST00000597649 CATSPERGQ6ZRH7 1159 aa20.11■□□□□ 0.81
SHKBP1-215ENST00000597649 TMEM57Q8N5G2 664 aa20.11■□□□□ 0.81
SHKBP1-215ENST00000597649 MIGA1Q8NAN2 632 aa20.11■□□□□ 0.81
SHKBP1-215ENST00000597649 BTBD7Q9P203 1132 aa20.11■□□□□ 0.81
SHKBP1-215ENST00000597649 DBNLQ9UJU6 430 aaKnown RBP20.11■□□□□ 0.81
SHKBP1-215ENST00000597649 CDK5RAP2Q96SN8 1893 aa20.11■□□□□ 0.81
SHKBP1-215ENST00000597649 PRUNE2Q8WUY3 3088 aa20.1■□□□□ 0.81
SHKBP1-215ENST00000597649 MYO5AQ9Y4I1 1855 aaKnown RBP20.1■□□□□ 0.81
SHKBP1-215ENST00000597649 CCDC8Q9H0W5 538 aaPredicted RBP20.1■□□□□ 0.81
SHKBP1-215ENST00000597649 SPTBN5Q9NRC6 3674 aaKnown RBP20.1■□□□□ 0.81
SHKBP1-215ENST00000597649 POTEB2H3BUK9 544 aa20.09■□□□□ 0.81
SHKBP1-215ENST00000597649 SURF6O75683 361 aaKnown RBP20.09■□□□□ 0.81
SHKBP1-215ENST00000597649 PTPREP23469 700 aa20.09■□□□□ 0.81
SHKBP1-215ENST00000597649 TRPV1Q8NER1 839 aa20.09■□□□□ 0.81
SHKBP1-215ENST00000597649 SENP6Q9GZR1 1112 aaPredicted RBP20.09■□□□□ 0.81
SHKBP1-215ENST00000597649 SLC15A5A6NIM6 579 aa20.08■□□□□ 0.81
SHKBP1-215ENST00000597649 IGHA2P01877 340 aa20.08■□□□□ 0.81
SHKBP1-215ENST00000597649 VCAM1P19320 739 aa20.08■□□□□ 0.81
SHKBP1-215ENST00000597649 OS9Q13438 667 aaPredicted RBP20.08■□□□□ 0.81
SHKBP1-215ENST00000597649 RAB3GAP1Q15042 981 aa20.08■□□□□ 0.81
SHKBP1-215ENST00000597649 NPLOC4Q8TAT6 608 aa20.08■□□□□ 0.81
SHKBP1-215ENST00000597649 EAF2Q96CJ1 260 aaPredicted RBP20.08■□□□□ 0.81
SHKBP1-215ENST00000597649 FEZ1Q99689 392 aa20.08■□□□□ 0.81
SHKBP1-215ENST00000597649 KIAA1683Q9H0B3 1180 aa20.08■□□□□ 0.81
SHKBP1-215ENST00000597649 C1orf115Q9H7X2 142 aa20.08■□□□□ 0.81
SHKBP1-215ENST00000597649 CWC22Q9HCG8 908 aaKnown RBP20.08■□□□□ 0.81
SHKBP1-215ENST00000597649 NOP58Q9Y2X3 529 aaKnown RBP20.08■□□□□ 0.81
SHKBP1-215ENST00000597649 FOCADQ5VW36 1801 aa20.07■□□□□ 0.8
SHKBP1-215ENST00000597649 IGSF3O75054 1194 aa20.07■□□□□ 0.8
SHKBP1-215ENST00000597649 IDH1O75874 414 aaKnown RBP20.07■□□□□ 0.8
SHKBP1-215ENST00000597649 HOXC6P09630 235 aa20.07■□□□□ 0.8
SHKBP1-215ENST00000597649 CYP2C19P33261 490 aa20.07■□□□□ 0.8
SHKBP1-215ENST00000597649 GUCY1A2P33402 732 aa20.07■□□□□ 0.8
SHKBP1-215ENST00000597649 USP5P45974 858 aa20.07■□□□□ 0.8
SHKBP1-215ENST00000597649 CERKLQ49MI3 558 aaPredicted RBP20.07■□□□□ 0.8
SHKBP1-215ENST00000597649 WDR78Q5VTH9 848 aa20.07■□□□□ 0.8
SHKBP1-215ENST00000597649 MFSD14CQ5VZR4 134 aa20.07■□□□□ 0.8
SHKBP1-215ENST00000597649 MAGEB6Q8N7X4 407 aa20.07■□□□□ 0.8
SHKBP1-215ENST00000597649 EHD4Q9H223 541 aa20.07■□□□□ 0.8
SHKBP1-215ENST00000597649 ANTXR1Q9H6X2 564 aa20.07■□□□□ 0.8
SHKBP1-215ENST00000597649 DDX20Q9UHI6 824 aaKnown RBP20.07■□□□□ 0.8
SHKBP1-215ENST00000597649 SERPINB13Q9UIV8 391 aa20.07■□□□□ 0.8
SHKBP1-215ENST00000597649 GLRX3O76003 335 aaKnown RBP20.06■□□□□ 0.8
SHKBP1-215ENST00000597649 SHMT1P34896 483 aa20.06■□□□□ 0.8
SHKBP1-215ENST00000597649 PLCD1P51178 756 aa20.06■□□□□ 0.8
SHKBP1-215ENST00000597649 ATN1P54259 1190 aaPredicted RBP20.06■□□□□ 0.8
SHKBP1-215ENST00000597649 CCNA1P78396 465 aa20.06■□□□□ 0.8
SHKBP1-215ENST00000597649 GRB14Q14449 540 aa20.06■□□□□ 0.8
SHKBP1-215ENST00000597649 LBX2Q6XYB7 198 aa20.06■□□□□ 0.8
SHKBP1-215ENST00000597649 GUCD1Q96NT3 240 aa20.06■□□□□ 0.8
SHKBP1-215ENST00000597649 MAST2Q6P0Q8 1798 aa20.06■□□□□ 0.8
SHKBP1-215ENST00000597649 SPDYE16A6NNV3 312 aaPredicted RBP20.05■□□□□ 0.8
SHKBP1-215ENST00000597649 USP14P54578 494 aa20.05■□□□□ 0.8
SHKBP1-215ENST00000597649 ATP2B2Q01814 1243 aa20.05■□□□□ 0.8
SHKBP1-215ENST00000597649 EVX2Q03828 476 aa20.05■□□□□ 0.8
SHKBP1-215ENST00000597649 ABCB5Q2M3G0 1257 aa20.05■□□□□ 0.8
SHKBP1-215ENST00000597649 LPAR1Q92633 364 aa20.05■□□□□ 0.8
SHKBP1-215ENST00000597649 RPAP3Q9H6T3 665 aaPredicted RBP20.05■□□□□ 0.8
SHKBP1-215ENST00000597649 CDH23Q9H251 3354 aa20.05■□□□□ 0.8
SHKBP1-215ENST00000597649 CNGA1P29973 690 aa20.04■□□□□ 0.8
SHKBP1-215ENST00000597649 A0A1W2PRG0 241 aa20.03■□□□□ 0.8
SHKBP1-215ENST00000597649 ZKSCAN2Q63HK3 967 aa20.03■□□□□ 0.8
SHKBP1-215ENST00000597649 FAM109BQ6ICB4 259 aaPredicted RBP20.03■□□□□ 0.8
SHKBP1-215ENST00000597649 TTC6Q86TZ1 520 aa20.03■□□□□ 0.8
SHKBP1-215ENST00000597649 FAM161BQ96MY7 647 aa20.03■□□□□ 0.8
SHKBP1-215ENST00000597649 DNM1LO00429 736 aa20.02■□□□□ 0.8
SHKBP1-215ENST00000597649 CYBAP13498 195 aa20.02■□□□□ 0.8
SHKBP1-215ENST00000597649 GABPAQ06546 454 aa20.02■□□□□ 0.8
SHKBP1-215ENST00000597649 SEPT2Q15019 361 aa20.02■□□□□ 0.8
SHKBP1-215ENST00000597649 GJC2Q5T442 439 aaPredicted RBP20.02■□□□□ 0.8
SHKBP1-215ENST00000597649 LBHD1Q9BQE6 289 aaPredicted RBP20.02■□□□□ 0.8
SHKBP1-215ENST00000597649 RIOK1Q9BRS2 568 aaKnown RBP20.02■□□□□ 0.8
SHKBP1-215ENST00000597649 COL25A1Q9BXS0 654 aaPredicted RBP20.02■□□□□ 0.8
SHKBP1-215ENST00000597649 MYH1P12882 1939 aa20.02■□□□□ 0.79
SHKBP1-215ENST00000597649 MSCO60682 206 aa20.01■□□□□ 0.79
SHKBP1-215ENST00000597649 RTP1P59025 263 aa20.01■□□□□ 0.79
SHKBP1-215ENST00000597649 KIAA1755Q5JYT7 1200 aa20.01■□□□□ 0.79
SHKBP1-215ENST00000597649 CERS3Q8IU89 383 aa20.01■□□□□ 0.79
SHKBP1-215ENST00000597649 MOV10L1Q9BXT6 1211 aaKnown RBP20.01■□□□□ 0.79
SHKBP1-215ENST00000597649 CABP5Q9NP86 173 aa20.01■□□□□ 0.79
SHKBP1-215ENST00000597649 IVNS1ABPQ9Y6Y0 642 aa20.01■□□□□ 0.79
SHKBP1-215ENST00000597649 COBLO75128 1261 aa20■□□□□ 0.79
SHKBP1-215ENST00000597649 RLBP1P12271 317 aa20■□□□□ 0.79
SHKBP1-215ENST00000597649 ADORA2AP29274 412 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms