RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 PRKAB2O43741 272 aa11.28□□□□□ -0.6
TRIM28-208ENST00000597172 HSPD1P10809 573 aaKnown RBP11.28□□□□□ -0.6
TRIM28-208ENST00000597172 CRKP46108 304 aa11.28□□□□□ -0.6
TRIM28-208ENST00000597172 MAP4K1Q92918 833 aa11.28□□□□□ -0.6
TRIM28-208ENST00000597172 ASB2Q96Q27 587 aa11.28□□□□□ -0.6
TRIM28-208ENST00000597172 P2RX7Q99572 595 aaKnown RBP11.28□□□□□ -0.6
TRIM28-208ENST00000597172 LBHD1Q9BQE6 289 aaPredicted RBP11.28□□□□□ -0.6
TRIM28-208ENST00000597172 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.28□□□□□ -0.68e-10■□□□□ 9
TRIM28-208ENST00000597172 ANO2Q9NQ90 1003 aa11.28□□□□□ -0.6
TRIM28-208ENST00000597172 AATFQ9NY61 560 aaKnown RBP eCLIP11.28□□□□□ -0.6
TRIM28-208ENST00000597172 SERPINA10Q9UK55 444 aa11.28□□□□□ -0.6
TRIM28-208ENST00000597172 DOCK3Q8IZD9 2030 aa11.28□□□□□ -0.6
TRIM28-208ENST00000597172 PATL2C9JE40 543 aaKnown RBP11.27□□□□□ -0.61
TRIM28-208ENST00000597172 IRF6O14896 467 aa11.27□□□□□ -0.61
TRIM28-208ENST00000597172 REC8O95072 547 aa11.27□□□□□ -0.61
TRIM28-208ENST00000597172 BTDP43251 543 aa11.27□□□□□ -0.61
TRIM28-208ENST00000597172 RHBDL3P58872 404 aa11.27□□□□□ -0.61
TRIM28-208ENST00000597172 ERO1BQ86YB8 467 aa11.27□□□□□ -0.61
TRIM28-208ENST00000597172 SLF2Q8IX21 1173 aa11.27□□□□□ -0.61
TRIM28-208ENST00000597172 SH3RF3Q8TEJ3 882 aaPredicted RBP11.27□□□□□ -0.61
TRIM28-208ENST00000597172 TEKT1Q969V4 418 aa11.27□□□□□ -0.61
TRIM28-208ENST00000597172 PRMT6Q96LA8 375 aaPredicted RBP11.27□□□□□ -0.61
TRIM28-208ENST00000597172 ZDHHC15Q96MV8 337 aa11.27□□□□□ -0.61
TRIM28-208ENST00000597172 SPDYE2BA6NHP3 402 aa11.26□□□□□ -0.61
TRIM28-208ENST00000597172 GSG1L2A8MUP6 293 aa11.26□□□□□ -0.61
TRIM28-208ENST00000597172 PDHXO00330 501 aa11.26□□□□□ -0.61
TRIM28-208ENST00000597172 EIF5BO60841 1220 aaKnown RBP11.26□□□□□ -0.61
TRIM28-208ENST00000597172 SPDYE6P0CI01 402 aa11.26□□□□□ -0.61
TRIM28-208ENST00000597172 IRF5Q13568 498 aa11.26□□□□□ -0.61
TRIM28-208ENST00000597172 CFAP100Q494V2 611 aa11.26□□□□□ -0.61
TRIM28-208ENST00000597172 KIAA1211Q6ZU35 1233 aa11.26□□□□□ -0.61
TRIM28-208ENST00000597172 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.26□□□□□ -0.611e-8■□□□□ 10.9
TRIM28-208ENST00000597172 DSCC1Q9BVC3 393 aa11.26□□□□□ -0.61
TRIM28-208ENST00000597172 SLC4A4Q9Y6R1 1079 aa11.26□□□□□ -0.61
TRIM28-208ENST00000597172 MYH7P12883 1935 aa11.26□□□□□ -0.61
TRIM28-208ENST00000597172 EPB41L2O43491 1005 aaKnown RBP11.25□□□□□ -0.61
TRIM28-208ENST00000597172 BAG3O95817 575 aa11.25□□□□□ -0.61
TRIM28-208ENST00000597172 FGAP02671 866 aa11.25□□□□□ -0.61
TRIM28-208ENST00000597172 MRPS5P82675 430 aaKnown RBP11.25□□□□□ -0.61
TRIM28-208ENST00000597172 SMAD3P84022 425 aaKnown RBP11.25□□□□□ -0.61
TRIM28-208ENST00000597172 NECTIN1Q15223 517 aa11.25□□□□□ -0.61
TRIM28-208ENST00000597172 ALX1Q15699 326 aa11.25□□□□□ -0.61
TRIM28-208ENST00000597172 CDC42EP5Q6NZY7 148 aa11.25□□□□□ -0.61
TRIM28-208ENST00000597172 ANKRD23Q86SG2 305 aa11.25□□□□□ -0.61
TRIM28-208ENST00000597172 IFNL3Q8IZI9 196 aa11.25□□□□□ -0.61
TRIM28-208ENST00000597172 IL27Q8NEV9 243 aa11.25□□□□□ -0.61
TRIM28-208ENST00000597172 SDR42E1Q8WUS8 393 aa11.25□□□□□ -0.61
TRIM28-208ENST00000597172 EPB41L4AQ9HCS5 686 aaPredicted RBP11.25□□□□□ -0.61
TRIM28-208ENST00000597172 USP40Q9NVE5 1235 aa11.25□□□□□ -0.61
TRIM28-208ENST00000597172 TAOK2Q9UL54 1235 aa11.25□□□□□ -0.61
TRIM28-208ENST00000597172 RBM8AQ9Y5S9 174 aaKnown RBP11.25□□□□□ -0.61
TRIM28-208ENST00000597172 MGAMO43451 1857 aa11.25□□□□□ -0.61
TRIM28-208ENST00000597172 MAST2Q6P0Q8 1798 aa11.24□□□□□ -0.61
TRIM28-208ENST00000597172 BCRP11274 1271 aa11.24□□□□□ -0.61
TRIM28-208ENST00000597172 GNAT2P19087 354 aa11.24□□□□□ -0.61
TRIM28-208ENST00000597172 HSPA4P34932 840 aa11.24□□□□□ -0.61
TRIM28-208ENST00000597172 MRE11P49959 708 aa11.24□□□□□ -0.61
TRIM28-208ENST00000597172 RBM5P52756 815 aaKnown RBP eCLIP11.24□□□□□ -0.61
TRIM28-208ENST00000597172 PPIL2Q13356 520 aa11.24□□□□□ -0.61
TRIM28-208ENST00000597172 TNFAIP1Q13829 316 aa11.24□□□□□ -0.61
TRIM28-208ENST00000597172 KCNB2Q92953 911 aa11.24□□□□□ -0.61
TRIM28-208ENST00000597172 C22orf23Q9BZE7 217 aa11.24□□□□□ -0.61
TRIM28-208ENST00000597172 THEGQ9P2T0 379 aa11.24□□□□□ -0.61
TRIM28-208ENST00000597172 PFASO15067 1338 aa11.24□□□□□ -0.61
TRIM28-208ENST00000597172 ECM29Q5VYK3 1845 aa11.23□□□□□ -0.61
TRIM28-208ENST00000597172 MYH2Q9UKX2 1941 aa11.23□□□□□ -0.61
TRIM28-208ENST00000597172 TCF20Q9UGU0 1960 aaKnown RBP11.23□□□□□ -0.61
TRIM28-208ENST00000597172 APPP05067 770 aa11.23□□□□□ -0.61
TRIM28-208ENST00000597172 PLCG2P16885 1265 aa11.23□□□□□ -0.61
TRIM28-208ENST00000597172 RBM25P49756 843 aaKnown RBP11.23□□□□□ -0.61
TRIM28-208ENST00000597172 SHHQ15465 462 aa11.23□□□□□ -0.61
TRIM28-208ENST00000597172 TMEM31Q5JXX7 168 aa11.23□□□□□ -0.61
TRIM28-208ENST00000597172 CDAN1Q8IWY9 1227 aa11.23□□□□□ -0.61
TRIM28-208ENST00000597172 TEX11Q8IYF3 940 aa11.23□□□□□ -0.61
TRIM28-208ENST00000597172 RASEFQ8IZ41 740 aa11.23□□□□□ -0.61
TRIM28-208ENST00000597172 TGFBRAP1Q8WUH2 860 aa11.23□□□□□ -0.61
TRIM28-208ENST00000597172 TEPSINQ96N21 525 aa11.23□□□□□ -0.61
TRIM28-208ENST00000597172 TBC1D32Q96NH3 1257 aa11.23□□□□□ -0.61
TRIM28-208ENST00000597172 NOL10Q9BSC4 688 aaKnown RBP11.23□□□□□ -0.61
TRIM28-208ENST00000597172 CRNKL1Q9BZJ0 848 aaKnown RBP11.23□□□□□ -0.61
TRIM28-208ENST00000597172 TDRD3Q9H7E2 651 aaKnown RBP11.23□□□□□ -0.61
TRIM28-208ENST00000597172 DCP1AQ9NPI6 582 aaPredicted RBP11.23□□□□□ -0.61
TRIM28-208ENST00000597172 TSHZ2Q9NRE2 1034 aa11.23□□□□□ -0.61
TRIM28-208ENST00000597172 ATP8A2Q9NTI2 1148 aa11.23□□□□□ -0.61
TRIM28-208ENST00000597172 OGDHLQ9ULD0 1010 aa11.23□□□□□ -0.61
TRIM28-208ENST00000597172 PALD1Q9ULE6 856 aa11.23□□□□□ -0.61
TRIM28-208ENST00000597172 SNCAIPQ9Y6H5 919 aa11.23□□□□□ -0.61
TRIM28-208ENST00000597172 TAF6LQ9Y6J9 622 aa11.23□□□□□ -0.61
TRIM28-208ENST00000597172 U3KPZ7 1027 aaPredicted RBP11.23□□□□□ -0.61
TRIM28-208ENST00000597172 RPAP1Q9BWH6 1393 aaPredicted RBP11.23□□□□□ -0.61
TRIM28-208ENST00000597172 DDX60LQ5H9U9 1706 aaKnown RBP11.23□□□□□ -0.61
TRIM28-208ENST00000597172 SPTBN4Q9H254 2564 aa11.23□□□□□ -0.61
TRIM28-208ENST00000597172 SMIM22K7EJ46 135 aa11.22□□□□□ -0.61
TRIM28-208ENST00000597172 SLC27A2O14975 620 aa11.22□□□□□ -0.61
TRIM28-208ENST00000597172 NFIAQ12857 509 aa11.22□□□□□ -0.61
TRIM28-208ENST00000597172 LRRC26Q2I0M4 334 aa11.22□□□□□ -0.61
TRIM28-208ENST00000597172 CREB3L3Q68CJ9 461 aa11.22□□□□□ -0.61
TRIM28-208ENST00000597172 GIMAP6Q6P9H5 292 aa11.22□□□□□ -0.61
TRIM28-208ENST00000597172 CTR9Q6PD62 1173 aa11.22□□□□□ -0.61
TRIM28-208ENST00000597172 CERS3Q8IU89 383 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms