RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 MAP3K9P80192 1104 aa17.31■□□□□ 0.36
UPF1-204ENST00000596842 PPARAQ07869 468 aa17.31■□□□□ 0.36
UPF1-204ENST00000596842 MORC3Q14149 939 aa17.31■□□□□ 0.36
UPF1-204ENST00000596842 PIK3AP1Q6ZUJ8 805 aa17.31■□□□□ 0.36
UPF1-204ENST00000596842 GPR161Q8N6U8 529 aaKnown RBP17.31■□□□□ 0.36
UPF1-204ENST00000596842 ACSBG1Q96GR2 724 aa17.31■□□□□ 0.36
UPF1-204ENST00000596842 TFR2Q9UP52 801 aa17.31■□□□□ 0.36
UPF1-204ENST00000596842 RIC1Q4ADV7 1423 aa17.3■□□□□ 0.36
UPF1-204ENST00000596842 GOLGA6L9A6NEM1 432 aa17.3■□□□□ 0.36
UPF1-204ENST00000596842 TUBB4AP04350 444 aa17.3■□□□□ 0.36
UPF1-204ENST00000596842 FAM47AQ5JRC9 791 aa17.3■□□□□ 0.36
UPF1-204ENST00000596842 SLC35F6Q8N357 371 aa17.3■□□□□ 0.36
UPF1-204ENST00000596842 ABCC6O95255 1503 aa17.3■□□□□ 0.36
UPF1-204ENST00000596842 TCRBV5S4A2TA0A5A2 114 aa17.3■□□□□ 0.36
UPF1-204ENST00000596842 NMT2O60551 498 aa17.3■□□□□ 0.36
UPF1-204ENST00000596842 KCNJ6P48051 423 aa17.3■□□□□ 0.36
UPF1-204ENST00000596842 GPS2Q13227 327 aa17.3■□□□□ 0.36
UPF1-204ENST00000596842 LONRF2Q1L5Z9 754 aa17.3■□□□□ 0.36
UPF1-204ENST00000596842 PCMTD1Q96MG8 357 aaPredicted RBP17.3■□□□□ 0.36
UPF1-204ENST00000596842 SRPRBQ9Y5M8 271 aaKnown RBP17.3■□□□□ 0.36
UPF1-204ENST00000596842 ACTN4O43707 911 aaKnown RBP17.3■□□□□ 0.36
UPF1-204ENST00000596842 FBXO3Q9UK99 471 aa17.3■□□□□ 0.36
UPF1-204ENST00000596842 ENC1O14682 589 aa17.29■□□□□ 0.36
UPF1-204ENST00000596842 ZRANB2O95218 330 aaKnown RBP eCLIP17.29■□□□□ 0.36
UPF1-204ENST00000596842 KRT2P35908 639 aa17.29■□□□□ 0.36
UPF1-204ENST00000596842 IGHMBP2P38935 993 aaKnown RBP17.29■□□□□ 0.36
UPF1-204ENST00000596842 FXR1P51114 621 aaKnown RBP eCLIP17.29■□□□□ 0.36
UPF1-204ENST00000596842 NLRP5P59047 1200 aa17.29■□□□□ 0.36
UPF1-204ENST00000596842 EVX2Q03828 476 aa17.29■□□□□ 0.36
UPF1-204ENST00000596842 PDE11AQ9HCR9 933 aa17.29■□□□□ 0.36
UPF1-204ENST00000596842 SIPA1L3O60292 1781 aaPredicted RBP17.29■□□□□ 0.36
UPF1-204ENST00000596842 PTGDRQ13258 359 aa17.29■□□□□ 0.36
UPF1-204ENST00000596842 ESR2Q92731 530 aa17.29■□□□□ 0.36
UPF1-204ENST00000596842 FOXP1Q9H334 677 aaPredicted RBP17.29■□□□□ 0.36
UPF1-204ENST00000596842 BRMS1Q9HCU9 246 aa17.29■□□□□ 0.36
UPF1-204ENST00000596842 CATIPQ7Z7H3 387 aa17.29■□□□□ 0.36
UPF1-204ENST00000596842 PAGE5Q96GU1 130 aa17.29■□□□□ 0.36
UPF1-204ENST00000596842 CAPZA3Q96KX2 299 aa17.29■□□□□ 0.36
UPF1-204ENST00000596842 ERCC3P19447 782 aa17.28■□□□□ 0.36
UPF1-204ENST00000596842 KANK3Q6NY19 840 aa17.28■□□□□ 0.36
UPF1-204ENST00000596842 CCDC24Q8N4L8 307 aa17.28■□□□□ 0.36
UPF1-204ENST00000596842 WDR19Q8NEZ3 1342 aa17.28■□□□□ 0.36
UPF1-204ENST00000596842 ZNF18P17022 549 aa17.28■□□□□ 0.36
UPF1-204ENST00000596842 CYP2C19P33261 490 aa17.28■□□□□ 0.36
UPF1-204ENST00000596842 NR1I3Q14994 352 aa17.28■□□□□ 0.36
UPF1-204ENST00000596842 ADGRA1Q86SQ6 560 aa17.28■□□□□ 0.36
UPF1-204ENST00000596842 VGLL2Q8N8G2 317 aa17.28■□□□□ 0.36
UPF1-204ENST00000596842 BTG4Q9NY30 223 aa17.28■□□□□ 0.36
UPF1-204ENST00000596842 ADGRG1Q9Y653 693 aa17.28■□□□□ 0.36
UPF1-204ENST00000596842 SOS2Q07890 1332 aaPredicted RBP17.28■□□□□ 0.36
UPF1-204ENST00000596842 SUSD4Q5VX71 490 aa17.28■□□□□ 0.36
UPF1-204ENST00000596842 RASGRP4Q8TDF6 673 aa17.28■□□□□ 0.36
UPF1-204ENST00000596842 RNF41Q9H4P4 317 aaPredicted RBP17.28■□□□□ 0.36
UPF1-204ENST00000596842 CTAGE9A4FU28 777 aa17.27■□□□□ 0.36
UPF1-204ENST00000596842 FAM193AP78312 1265 aa17.27■□□□□ 0.36
UPF1-204ENST00000596842 TBX2Q13207 712 aaPredicted RBP17.27■□□□□ 0.36
UPF1-204ENST00000596842 EP400NLQ6ZTU2 488 aa17.27■□□□□ 0.36
UPF1-204ENST00000596842 TRIM10Q9UDY6 481 aa17.27■□□□□ 0.36
UPF1-204ENST00000596842 MYH15Q9Y2K3 1946 aa17.27■□□□□ 0.36
UPF1-204ENST00000596842 MAGEB6P1A0A0J9YX57 407 aa17.27■□□□□ 0.36
UPF1-204ENST00000596842 BRD2P25440 801 aaKnown RBP17.27■□□□□ 0.36
UPF1-204ENST00000596842 TRIM28Q13263 835 aaKnown RBP17.27■□□□□ 0.36
UPF1-204ENST00000596842 SPATA1Q5VX52 437 aa17.27■□□□□ 0.36
UPF1-204ENST00000596842 NCAPH2Q6IBW4 605 aa17.27■□□□□ 0.36
UPF1-204ENST00000596842 KRT9P35527 623 aa17.27■□□□□ 0.35
UPF1-204ENST00000596842 TXLNAP40222 546 aa17.27■□□□□ 0.35
UPF1-204ENST00000596842 FCHSD1Q86WN1 690 aa17.27■□□□□ 0.35
UPF1-204ENST00000596842 RGS22Q8NE09 1264 aa17.27■□□□□ 0.35
UPF1-204ENST00000596842 DEF6Q9H4E7 631 aa17.27■□□□□ 0.35
UPF1-204ENST00000596842 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.27■□□□□ 0.35
UPF1-204ENST00000596842 NWD2Q9ULI1 1742 aa17.27■□□□□ 0.35
UPF1-204ENST00000596842 UBXN1Q04323 297 aa17.26■□□□□ 0.35
UPF1-204ENST00000596842 TTC38Q5R3I4 469 aa17.26■□□□□ 0.35
UPF1-204ENST00000596842 BRINP3Q76B58 766 aa17.26■□□□□ 0.35
UPF1-204ENST00000596842 IQCA1Q86XH1 822 aa17.26■□□□□ 0.35
UPF1-204ENST00000596842 CNPY4Q8N129 248 aa17.26■□□□□ 0.35
UPF1-204ENST00000596842 KIFC2Q96AC6 838 aa17.26■□□□□ 0.35
UPF1-204ENST00000596842 TNS3Q68CZ2 1445 aa17.26■□□□□ 0.35
UPF1-204ENST00000596842 N4BP1O75113 896 aaKnown RBP17.26■□□□□ 0.35
UPF1-204ENST00000596842 ZMYND10O75800 440 aa17.26■□□□□ 0.35
UPF1-204ENST00000596842 ARID4AP29374 1257 aaPredicted RBP17.26■□□□□ 0.35
UPF1-204ENST00000596842 ANKRD20A12PQ8NF67 263 aa17.26■□□□□ 0.35
UPF1-204ENST00000596842 SLC4A9Q96Q91 983 aa17.26■□□□□ 0.35
UPF1-204ENST00000596842 NIP7Q9Y221 180 aaKnown RBP eCLIP17.26■□□□□ 0.35
UPF1-204ENST00000596842 GDAQ9Y2T3 454 aa17.26■□□□□ 0.35
UPF1-204ENST00000596842 VEGFAP15692 232 aaPredicted RBP17.26■□□□□ 0.35
UPF1-204ENST00000596842 DPYDQ12882 1025 aa17.26■□□□□ 0.35
UPF1-204ENST00000596842 CUL4BQ13620 913 aa17.26■□□□□ 0.35
UPF1-204ENST00000596842 RABGGTAQ92696 567 aa17.26■□□□□ 0.35
UPF1-204ENST00000596842 RASSF4Q9H2L5 321 aa17.26■□□□□ 0.35
UPF1-204ENST00000596842 USP54Q70EL1 1684 aa17.26■□□□□ 0.35
UPF1-204ENST00000596842 SMIM5Q71RC9 77 aa17.25■□□□□ 0.35
UPF1-204ENST00000596842 ENAHQ8N8S7 591 aaPredicted RBP17.25■□□□□ 0.35
UPF1-204ENST00000596842 TRIM49BA6NDI0 452 aa17.25■□□□□ 0.35
UPF1-204ENST00000596842 PNKPQ96T60 521 aa17.25■□□□□ 0.35
UPF1-204ENST00000596842 CARD10Q9BWT7 1032 aa17.25■□□□□ 0.35
UPF1-204ENST00000596842 PLA2G12BQ9BX93 195 aa17.25■□□□□ 0.35
UPF1-204ENST00000596842 A0A1B0GTH6 734 aa17.25■□□□□ 0.35
UPF1-204ENST00000596842 USP17L12C9JPN9 530 aa17.25■□□□□ 0.35
UPF1-204ENST00000596842 USP17L21D6R901 530 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms