RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 PARP14Q460N5 1801 aa12.69□□□□□ -0.38
LIG1-213ENST00000596672 GREB1LQ9C091 1923 aaPredicted RBP12.68□□□□□ -0.38
LIG1-213ENST00000596672 SALL3Q9BXA9 1300 aa12.68□□□□□ -0.38
LIG1-213ENST00000596672 SLC34A2O95436 690 aa12.68□□□□□ -0.38
LIG1-213ENST00000596672 INHAP05111 366 aa12.68□□□□□ -0.38
LIG1-213ENST00000596672 POLR3DP05423 398 aaPredicted RBP12.68□□□□□ -0.38
LIG1-213ENST00000596672 GJB1P08034 283 aa12.68□□□□□ -0.38
LIG1-213ENST00000596672 AKR1B1P15121 316 aa12.68□□□□□ -0.38
LIG1-213ENST00000596672 HOXD10P28358 340 aa12.68□□□□□ -0.38
LIG1-213ENST00000596672 GCLCP48506 637 aaPredicted RBP12.68□□□□□ -0.38
LIG1-213ENST00000596672 RAB3GAP1Q15042 981 aa12.68□□□□□ -0.38
LIG1-213ENST00000596672 UBE3CQ15386 1083 aa12.68□□□□□ -0.38
LIG1-213ENST00000596672 C12orf60Q5U649 245 aa12.68□□□□□ -0.38
LIG1-213ENST00000596672 TMED8Q6PL24 325 aaPredicted RBP12.68□□□□□ -0.38
LIG1-213ENST00000596672 PI4K2BQ8TCG2 481 aa12.68□□□□□ -0.38
LIG1-213ENST00000596672 USP6NLQ92738 828 aa12.68□□□□□ -0.38
LIG1-213ENST00000596672 KIAA1683Q9H0B3 1180 aa12.68□□□□□ -0.38
LIG1-213ENST00000596672 ECHDC1Q9NTX5 307 aa12.68□□□□□ -0.38
LIG1-213ENST00000596672 GINM1Q9NU53 330 aa12.68□□□□□ -0.38
LIG1-213ENST00000596672 BTBD7Q9P203 1132 aa12.68□□□□□ -0.38
LIG1-213ENST00000596672 USP17L12C9JPN9 530 aa12.67□□□□□ -0.38
LIG1-213ENST00000596672 USP17L21D6R901 530 aa12.67□□□□□ -0.38
LIG1-213ENST00000596672 VCAM1P19320 739 aa12.67□□□□□ -0.38
LIG1-213ENST00000596672 GJA8P48165 433 aa12.67□□□□□ -0.38
LIG1-213ENST00000596672 MNX1P50219 401 aaPredicted RBP12.67□□□□□ -0.38
LIG1-213ENST00000596672 CTR9Q6PD62 1173 aa12.67□□□□□ -0.38
LIG1-213ENST00000596672 USP17L2Q6R6M4 530 aa12.67□□□□□ -0.38
LIG1-213ENST00000596672 CATSPERGQ6ZRH7 1159 aa12.67□□□□□ -0.38
LIG1-213ENST00000596672 PXYLP1Q8TE99 480 aa12.67□□□□□ -0.38
LIG1-213ENST00000596672 TRIB2Q92519 343 aa12.67□□□□□ -0.38
LIG1-213ENST00000596672 STRBPQ96SI9 672 aaKnown RBP12.67□□□□□ -0.38
LIG1-213ENST00000596672 RNF208Q9H0X6 261 aa12.67□□□□□ -0.38
LIG1-213ENST00000596672 EPB41L4AQ9HCS5 686 aaPredicted RBP12.67□□□□□ -0.38
LIG1-213ENST00000596672 TMOD4Q9NZQ9 345 aa12.67□□□□□ -0.38
LIG1-213ENST00000596672 PNMA3Q9UL41 463 aa12.67□□□□□ -0.38
LIG1-213ENST00000596672 LAMA3Q16787 3333 aa12.67□□□□□ -0.38
LIG1-213ENST00000596672 GSG1L2A8MUP6 293 aa12.66□□□□□ -0.38
LIG1-213ENST00000596672 M0R2C6 588 aa12.66□□□□□ -0.38
LIG1-213ENST00000596672 FOXP2O15409 715 aa12.66□□□□□ -0.38
LIG1-213ENST00000596672 CDK8P49336 464 aa12.66□□□□□ -0.38
LIG1-213ENST00000596672 IRX3P78415 501 aaPredicted RBP12.66□□□□□ -0.38
LIG1-213ENST00000596672 CCL14Q16627 93 aa12.66□□□□□ -0.38
LIG1-213ENST00000596672 CERS3Q8IU89 383 aa12.66□□□□□ -0.38
LIG1-213ENST00000596672 SLAIN1Q8ND83 568 aa12.66□□□□□ -0.38
LIG1-213ENST00000596672 U2AF1L4Q8WU68 220 aaKnown RBP12.66□□□□□ -0.38
LIG1-213ENST00000596672 SEC62Q99442 399 aaKnown RBP12.66□□□□□ -0.38
LIG1-213ENST00000596672 TRIM34Q9BYJ4 488 aa12.66□□□□□ -0.38
LIG1-213ENST00000596672 CHMP4BQ9H444 224 aaKnown RBP12.66□□□□□ -0.38
LIG1-213ENST00000596672 PAK6Q9NQU5 681 aaPredicted RBP12.66□□□□□ -0.38
LIG1-213ENST00000596672 PCDH10Q9P2E7 1040 aa12.66□□□□□ -0.38
LIG1-213ENST00000596672 DNAH12Q6ZR08 3092 aa12.66□□□□□ -0.38
LIG1-213ENST00000596672 SPDYE16A6NNV3 312 aaPredicted RBP12.65□□□□□ -0.38
LIG1-213ENST00000596672 ERVK-9P63128 1117 aa12.65□□□□□ -0.38
LIG1-213ENST00000596672 ERVK-24P63145 666 aa12.65□□□□□ -0.38
LIG1-213ENST00000596672 MORN1Q5T089 497 aa12.65□□□□□ -0.38
LIG1-213ENST00000596672 KBTBD3Q8NAB2 608 aa12.65□□□□□ -0.38
LIG1-213ENST00000596672 GPRC5AQ8NFJ5 357 aa12.65□□□□□ -0.38
LIG1-213ENST00000596672 PAGR1Q9BTK6 254 aa12.65□□□□□ -0.38
LIG1-213ENST00000596672 CRISPLD2Q9H0B8 497 aa12.65□□□□□ -0.38
LIG1-213ENST00000596672 ATP8A2Q9NTI2 1148 aa12.65□□□□□ -0.38
LIG1-213ENST00000596672 BIN2Q9UBW5 565 aaPredicted RBP12.65□□□□□ -0.38
LIG1-213ENST00000596672 TAOK2Q9UL54 1235 aa12.65□□□□□ -0.38
LIG1-213ENST00000596672 TACC3Q9Y6A5 838 aa12.65□□□□□ -0.38
LIG1-213ENST00000596672 SLC4A4Q9Y6R1 1079 aa12.65□□□□□ -0.38
LIG1-213ENST00000596672 A0A0G2JMZ2 1700 aa12.65□□□□□ -0.38
LIG1-213ENST00000596672 COL11A1P12107 1806 aaPredicted RBP12.65□□□□□ -0.39
LIG1-213ENST00000596672 ZNFX1Q9P2E3 1918 aaKnown RBP12.64□□□□□ -0.39
LIG1-213ENST00000596672 USP17L15C9J2P7 530 aa12.64□□□□□ -0.39
LIG1-213ENST00000596672 USP17L13C9JLJ4 530 aa12.64□□□□□ -0.39
LIG1-213ENST00000596672 USP17L11C9JVI0 530 aa12.64□□□□□ -0.39
LIG1-213ENST00000596672 USP17L18D6R9N7 530 aa12.64□□□□□ -0.39
LIG1-213ENST00000596672 USP17L22D6RA61 530 aa12.64□□□□□ -0.39
LIG1-213ENST00000596672 USP17L17D6RBQ6 530 aa12.64□□□□□ -0.39
LIG1-213ENST00000596672 USP17L19D6RCP7 530 aa12.64□□□□□ -0.39
LIG1-213ENST00000596672 USP17L20D6RJB6 530 aa12.64□□□□□ -0.39
LIG1-213ENST00000596672 H0YGN5 161 aa12.64□□□□□ -0.39
LIG1-213ENST00000596672 SGPL1O95470 568 aa12.64□□□□□ -0.39
LIG1-213ENST00000596672 IGHA2P01877 340 aa12.64□□□□□ -0.39
LIG1-213ENST00000596672 CYP2B6P20813 491 aa12.64□□□□□ -0.39
LIG1-213ENST00000596672 USP17L24Q0WX57 530 aa12.64□□□□□ -0.39
LIG1-213ENST00000596672 PABPC4Q13310 644 aaKnown RBP eCLIP12.64□□□□□ -0.39
LIG1-213ENST00000596672 C16orf86Q6ZW13 317 aa12.64□□□□□ -0.39
LIG1-213ENST00000596672 DIS3LQ8TF46 1054 aaKnown RBP12.64□□□□□ -0.39
LIG1-213ENST00000596672 COA7Q96BR5 231 aa12.64□□□□□ -0.39
LIG1-213ENST00000596672 DEFB118Q96PH6 123 aa12.64□□□□□ -0.39
LIG1-213ENST00000596672 RPAP3Q9H6T3 665 aaPredicted RBP12.64□□□□□ -0.39
LIG1-213ENST00000596672 FLRT1Q9NZU1 646 aa12.64□□□□□ -0.39
LIG1-213ENST00000596672 RNF113AO15541 343 aaKnown RBP12.63□□□□□ -0.39
LIG1-213ENST00000596672 MAP3K21Q5TCX8 1036 aa12.63□□□□□ -0.39
LIG1-213ENST00000596672 GPR142Q7Z601 462 aa12.63□□□□□ -0.39
LIG1-213ENST00000596672 STK11IPQ8N1F8 1099 aa12.63□□□□□ -0.39
LIG1-213ENST00000596672 FEZ1Q99689 392 aa12.63□□□□□ -0.39
LIG1-213ENST00000596672 SMCHD1A6NHR9 2005 aa12.62□□□□□ -0.39
LIG1-213ENST00000596672 MPHOSPH10O00566 681 aaKnown RBP12.62□□□□□ -0.39
LIG1-213ENST00000596672 RASA1P20936 1047 aa12.62□□□□□ -0.39
LIG1-213ENST00000596672 LBX2Q6XYB7 198 aa12.62□□□□□ -0.39
LIG1-213ENST00000596672 SPICE1Q8N0Z3 855 aa12.62□□□□□ -0.39
LIG1-213ENST00000596672 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.62□□□□□ -0.393e-8■■■□□ 15.7
LIG1-213ENST00000596672 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.62□□□□□ -0.39
LIG1-213ENST00000596672 CABP5Q9NP86 173 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms