RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 PATL2C9JE40 543 aaKnown RBP13.16□□□□□ -0.3
SHKBP1-206ENST00000595523 VPS53Q5VIR6 699 aa13.16□□□□□ -0.3
SHKBP1-206ENST00000595523 CLEC10AQ8IUN9 316 aa13.16□□□□□ -0.3
SHKBP1-206ENST00000595523 TRIM17Q9Y577 477 aa13.16□□□□□ -0.3
SHKBP1-206ENST00000595523 RBBP6Q7Z6E9 1792 aaKnown RBP13.16□□□□□ -0.3
SHKBP1-206ENST00000595523 A0A1W2PRG0 241 aa13.15□□□□□ -0.3
SHKBP1-206ENST00000595523 TRIM6-TRIM34B2RNG4 842 aa13.15□□□□□ -0.3
SHKBP1-206ENST00000595523 MPHOSPH10O00566 681 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-206ENST00000595523 TDO2P48775 406 aa13.15□□□□□ -0.3
SHKBP1-206ENST00000595523 NMIQ13287 307 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-206ENST00000595523 PKN2Q16513 984 aaKnown RBP13.15□□□□□ -0.3
SHKBP1-206ENST00000595523 FBXO46Q6PJ61 603 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-206ENST00000595523 TMEM179Q6ZVK1 233 aa13.15□□□□□ -0.3
SHKBP1-206ENST00000595523 ZNF589Q86UQ0 364 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-206ENST00000595523 TICAM2Q86XR7 235 aa13.15□□□□□ -0.3
SHKBP1-206ENST00000595523 SIAH1Q8IUQ4 282 aa13.15□□□□□ -0.3
SHKBP1-206ENST00000595523 AMOTL1Q8IY63 956 aa13.15□□□□□ -0.3
SHKBP1-206ENST00000595523 RILPL2Q969X0 211 aa13.15□□□□□ -0.3
SHKBP1-206ENST00000595523 C12orf42Q96LP6 360 aa13.15□□□□□ -0.3
SHKBP1-206ENST00000595523 KIAA1683Q9H0B3 1180 aa13.15□□□□□ -0.3
SHKBP1-206ENST00000595523 ASCC2Q9H1I8 757 aaPredicted RBP13.15□□□□□ -0.3
SHKBP1-206ENST00000595523 EFCC1Q9HA90 598 aa13.15□□□□□ -0.3
SHKBP1-206ENST00000595523 CABP5Q9NP86 173 aa13.15□□□□□ -0.3
SHKBP1-206ENST00000595523 HELLSQ9NRZ9 838 aa13.15□□□□□ -0.3
SHKBP1-206ENST00000595523 HPS5Q9UPZ3 1129 aa13.15□□□□□ -0.3
SHKBP1-206ENST00000595523 MINDY4BA8MYZ0 360 aa13.14□□□□□ -0.31
SHKBP1-206ENST00000595523 ECM2O94769 699 aaPredicted RBP13.14□□□□□ -0.31
SHKBP1-206ENST00000595523 APPP05067 770 aa13.14□□□□□ -0.31
SHKBP1-206ENST00000595523 GSPT1P15170 499 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-206ENST00000595523 RASA1P20936 1047 aa13.14□□□□□ -0.31
SHKBP1-206ENST00000595523 HOXA7P31268 230 aaPredicted RBP13.14□□□□□ -0.31
SHKBP1-206ENST00000595523 ZYXQ15942 572 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-206ENST00000595523 USP17L2Q6R6M4 530 aa13.14□□□□□ -0.31
SHKBP1-206ENST00000595523 STK11IPQ8N1F8 1099 aa13.14□□□□□ -0.31
SHKBP1-206ENST00000595523 TRIM47Q96LD4 638 aa13.14□□□□□ -0.31
SHKBP1-206ENST00000595523 FEZ1Q99689 392 aa13.14□□□□□ -0.31
SHKBP1-206ENST00000595523 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.14□□□□□ -0.31
SHKBP1-206ENST00000595523 TMOD4Q9NZQ9 345 aa13.14□□□□□ -0.31
SHKBP1-206ENST00000595523 PTPN22Q9Y2R2 807 aa13.14□□□□□ -0.31
SHKBP1-206ENST00000595523 VCAM1P19320 739 aa13.13□□□□□ -0.31
SHKBP1-206ENST00000595523 SDSP20132 328 aa13.13□□□□□ -0.31
SHKBP1-206ENST00000595523 MCMDC2Q4G0Z9 681 aa13.13□□□□□ -0.31
SHKBP1-206ENST00000595523 KIAA1755Q5JYT7 1200 aa13.13□□□□□ -0.31
SHKBP1-206ENST00000595523 TTC22Q5TAA0 569 aa13.13□□□□□ -0.31
SHKBP1-206ENST00000595523 POTEEQ6S8J3 1075 aa13.13□□□□□ -0.31
SHKBP1-206ENST00000595523 SMCR8Q8TEV9 937 aaPredicted RBP13.13□□□□□ -0.31
SHKBP1-206ENST00000595523 CCDC17Q96LX7 622 aa13.13□□□□□ -0.31
SHKBP1-206ENST00000595523 PNMA3Q9UL41 463 aa13.13□□□□□ -0.31
SHKBP1-206ENST00000595523 TACC3Q9Y6A5 838 aa13.13□□□□□ -0.31
SHKBP1-206ENST00000595523 CCDC85CA6NKD9 419 aa13.12□□□□□ -0.31
SHKBP1-206ENST00000595523 PEX10O60683 326 aa13.12□□□□□ -0.31
SHKBP1-206ENST00000595523 PSMC4P43686 418 aa13.12□□□□□ -0.31
SHKBP1-206ENST00000595523 ICA1Q05084 483 aa13.12□□□□□ -0.31
SHKBP1-206ENST00000595523 PPARAQ07869 468 aa13.12□□□□□ -0.31
SHKBP1-206ENST00000595523 PABPC4Q13310 644 aaKnown RBP eCLIP13.12□□□□□ -0.31
SHKBP1-206ENST00000595523 FAM110CQ1W6H9 321 aa13.12□□□□□ -0.31
SHKBP1-206ENST00000595523 ANKRD13CQ8N6S4 541 aa13.12□□□□□ -0.31
SHKBP1-206ENST00000595523 P2RX7Q99572 595 aaKnown RBP13.12□□□□□ -0.31
SHKBP1-206ENST00000595523 NACAP1Q9BZK3 213 aa13.12□□□□□ -0.31
SHKBP1-206ENST00000595523 NAPBQ9H115 298 aa13.12□□□□□ -0.31
SHKBP1-206ENST00000595523 MKI67P46013 3256 aaKnown RBP13.12□□□□□ -0.31
SHKBP1-206ENST00000595523 CCDC171Q6TFL3 1326 aa13.12□□□□□ -0.31
SHKBP1-206ENST00000595523 PRDM1O75626 825 aa13.11□□□□□ -0.31
SHKBP1-206ENST00000595523 HSPD1P10809 573 aaKnown RBP13.11□□□□□ -0.31
SHKBP1-206ENST00000595523 OSBPP22059 807 aa13.11□□□□□ -0.31
SHKBP1-206ENST00000595523 USP14P54578 494 aa13.11□□□□□ -0.31
SHKBP1-206ENST00000595523 HERVK_113P62684 666 aa13.11□□□□□ -0.31
SHKBP1-206ENST00000595523 IRX3P78415 501 aaPredicted RBP13.11□□□□□ -0.31
SHKBP1-206ENST00000595523 ALX1Q15699 326 aa13.11□□□□□ -0.31
SHKBP1-206ENST00000595523 IL25Q9H293 177 aa13.11□□□□□ -0.31
SHKBP1-206ENST00000595523 TXNRD2Q9NNW7 524 aa13.11□□□□□ -0.31
SHKBP1-206ENST00000595523 TMX2Q9Y320 296 aa13.11□□□□□ -0.31
SHKBP1-206ENST00000595523 PTCH2Q9Y6C5 1203 aa13.11□□□□□ -0.31
SHKBP1-206ENST00000595523 PLIN4Q96Q06 1357 aa13.1□□□□□ -0.31
SHKBP1-206ENST00000595523 ZNFX1Q9P2E3 1918 aaKnown RBP13.1□□□□□ -0.31
SHKBP1-206ENST00000595523 PDE4DIPQ5VU43 2346 aa13.1□□□□□ -0.31
SHKBP1-206ENST00000595523 IGKV6D-41A0A0C4DH26 115 aa13.1□□□□□ -0.31
SHKBP1-206ENST00000595523 EEF2P13639 858 aaKnown RBP13.1□□□□□ -0.31
SHKBP1-206ENST00000595523 GCLCP48506 637 aaPredicted RBP13.1□□□□□ -0.31
SHKBP1-206ENST00000595523 CTDSPL2Q05D32 466 aa13.1□□□□□ -0.31
SHKBP1-206ENST00000595523 KIF22Q14807 665 aa13.1□□□□□ -0.31
SHKBP1-206ENST00000595523 CATSPERGQ6ZRH7 1159 aa13.1□□□□□ -0.31
SHKBP1-206ENST00000595523 SKAP1Q86WV1 359 aa13.1□□□□□ -0.31
SHKBP1-206ENST00000595523 MKNK2Q9HBH9 465 aa13.1□□□□□ -0.31
SHKBP1-206ENST00000595523 INCENPQ9NQS7 918 aa13.1□□□□□ -0.31
SHKBP1-206ENST00000595523 MORF4L1Q9UBU8 362 aa13.1□□□□□ -0.31
SHKBP1-206ENST00000595523 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.1□□□□□ -0.31
SHKBP1-206ENST00000595523 ZMYM6O95789 1325 aa13.1□□□□□ -0.31
SHKBP1-206ENST00000595523 USP17L15C9J2P7 530 aa13.09□□□□□ -0.31
SHKBP1-206ENST00000595523 USP17L13C9JLJ4 530 aa13.09□□□□□ -0.31
SHKBP1-206ENST00000595523 USP17L11C9JVI0 530 aa13.09□□□□□ -0.31
SHKBP1-206ENST00000595523 USP17L18D6R9N7 530 aa13.09□□□□□ -0.31
SHKBP1-206ENST00000595523 USP17L22D6RA61 530 aa13.09□□□□□ -0.31
SHKBP1-206ENST00000595523 USP17L17D6RBQ6 530 aa13.09□□□□□ -0.31
SHKBP1-206ENST00000595523 USP17L19D6RCP7 530 aa13.09□□□□□ -0.31
SHKBP1-206ENST00000595523 USP17L20D6RJB6 530 aa13.09□□□□□ -0.31
SHKBP1-206ENST00000595523 GNRH1P01148 92 aa13.09□□□□□ -0.31
SHKBP1-206ENST00000595523 FGAP02671 866 aa13.09□□□□□ -0.31
SHKBP1-206ENST00000595523 USP17L24Q0WX57 530 aa13.09□□□□□ -0.31
SHKBP1-206ENST00000595523 CWC27Q6UX04 472 aaKnown RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms