RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 REXO1Q8N1G1 1221 aaKnown RBP11.18□□□□□ -0.62
LIG3-216ENST00000593099 NOP56O00567 594 aaKnown RBP11.17□□□□□ -0.62
LIG3-216ENST00000593099 NASPP49321 788 aaPredicted RBP11.17□□□□□ -0.62
LIG3-216ENST00000593099 CCDC183Q5T5S1 534 aa11.17□□□□□ -0.62
LIG3-216ENST00000593099 FBXO33Q7Z6M2 555 aa11.17□□□□□ -0.62
LIG3-216ENST00000593099 NCAPG2Q86XI2 1143 aa11.17□□□□□ -0.62
LIG3-216ENST00000593099 ZSWIM6Q9HCJ5 1215 aa11.17□□□□□ -0.62
LIG3-216ENST00000593099 CYP2D7A0A087X1C5 515 aa11.17□□□□□ -0.62
LIG3-216ENST00000593099 PIK3AP1Q6ZUJ8 805 aa11.17□□□□□ -0.62
LIG3-216ENST00000593099 PPFIBP1Q86W92 1011 aa11.17□□□□□ -0.62
LIG3-216ENST00000593099 WRNIP1Q96S55 665 aa11.17□□□□□ -0.62
LIG3-216ENST00000593099 ZBTB12Q9Y330 459 aaPredicted RBP11.17□□□□□ -0.62
LIG3-216ENST00000593099 DKC1O60832 514 aaKnown RBP eCLIP11.17□□□□□ -0.62
LIG3-216ENST00000593099 GOLGA8HP0CJ92 632 aa11.17□□□□□ -0.62
LIG3-216ENST00000593099 BMP3P12645 472 aa11.17□□□□□ -0.62
LIG3-216ENST00000593099 GMPSP49915 693 aaPredicted RBP11.17□□□□□ -0.62
LIG3-216ENST00000593099 DDR1Q08345 913 aa11.17□□□□□ -0.62
LIG3-216ENST00000593099 SPC25Q9HBM1 224 aa11.17□□□□□ -0.62
LIG3-216ENST00000593099 hCG_1642624A0A1W2PR95 340 aa11.17□□□□□ -0.62
LIG3-216ENST00000593099 PSMD14O00487 310 aa11.17□□□□□ -0.62
LIG3-216ENST00000593099 UBE2HP62256 183 aa11.17□□□□□ -0.62
LIG3-216ENST00000593099 KCTD2Q14681 263 aa11.17□□□□□ -0.62
LIG3-216ENST00000593099 C9orf131Q5VYM1 1079 aa11.17□□□□□ -0.62
LIG3-216ENST00000593099 CCPG1Q9ULG6 757 aa11.17□□□□□ -0.62
LIG3-216ENST00000593099 ZBTB21Q9ULJ3 1066 aa11.17□□□□□ -0.62
LIG3-216ENST00000593099 SMCO2A6NFE2 343 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 SYT1P21579 422 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 MRE11P49959 708 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 RRAGBQ5VZM2 374 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 MRPS27Q92552 414 aaKnown RBP11.16□□□□□ -0.62
LIG3-216ENST00000593099 GPBP1L1Q9HC44 474 aaPredicted RBP11.16□□□□□ -0.62
LIG3-216ENST00000593099 NOD1Q9Y239 953 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 GH2P01242 217 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 RFX5P48382 616 aaPredicted RBP11.16□□□□□ -0.62
LIG3-216ENST00000593099 SCARF1Q14162 830 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 ZNF174Q15697 407 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 ATL3Q6DD88 541 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 TDRD7Q8NHU6 1098 aaKnown RBP11.16□□□□□ -0.62
LIG3-216ENST00000593099 BICD1Q96G01 975 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 EXOC1Q9NV70 894 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 PNMA3Q9UL41 463 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 NALCNQ8IZF0 1738 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 NFAT5O94916 1531 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 GCOM1H8Y6P7 765 aaPredicted RBP11.16□□□□□ -0.62
LIG3-216ENST00000593099 POLR2MP0CAP2 368 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 NCBP1Q09161 790 aaKnown RBP11.16□□□□□ -0.62
LIG3-216ENST00000593099 GNPTABQ3T906 1256 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 ZFYVE27Q5T4F4 411 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 KRT40Q6A162 431 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 NLRX1Q86UT6 975 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 AGBL3Q8NEM8 1001 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 AMNQ9BXJ7 453 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 RMND1Q9NWS8 449 aa11.16□□□□□ -0.62
LIG3-216ENST00000593099 KRI1Q8N9T8 703 aaKnown RBP11.15□□□□□ -0.62
LIG3-216ENST00000593099 PSTPIP2Q9H939 334 aa11.15□□□□□ -0.62
LIG3-216ENST00000593099 DCP1AQ9NPI6 582 aaPredicted RBP11.15□□□□□ -0.62
LIG3-216ENST00000593099 RGS12O14924 1447 aa11.15□□□□□ -0.62
LIG3-216ENST00000593099 DNM1Q05193 864 aaKnown RBP11.15□□□□□ -0.62
LIG3-216ENST00000593099 MKRN3Q13064 507 aaKnown RBP11.15□□□□□ -0.62
LIG3-216ENST00000593099 HHIPL2Q6UWX4 724 aa11.15□□□□□ -0.62
LIG3-216ENST00000593099 DAGLAQ9Y4D2 1042 aa11.15□□□□□ -0.62
LIG3-216ENST00000593099 ADD1P35611 737 aaKnown RBP11.15□□□□□ -0.62
LIG3-216ENST00000593099 PNMA8AQ86V59 439 aaPredicted RBP11.15□□□□□ -0.62
LIG3-216ENST00000593099 NSUN4Q96CB9 384 aaKnown RBP11.15□□□□□ -0.62
LIG3-216ENST00000593099 ZNF512BQ96KM6 892 aaPredicted RBP11.15□□□□□ -0.62
LIG3-216ENST00000593099 VPS54Q9P1Q0 977 aa11.15□□□□□ -0.62
LIG3-216ENST00000593099 TMEM87AQ8NBN3 555 aa11.15□□□□□ -0.63
LIG3-216ENST00000593099 GTF3C6Q969F1 213 aa11.15□□□□□ -0.63
LIG3-216ENST00000593099 LUC7LQ9NQ29 371 aaKnown RBP11.15□□□□□ -0.63
LIG3-216ENST00000593099 HERC5Q9UII4 1024 aaKnown RBP11.15□□□□□ -0.63
LIG3-216ENST00000593099 PCDHA1Q9Y5I3 950 aa11.15□□□□□ -0.63
LIG3-216ENST00000593099 ZMYM6O95789 1325 aa11.15□□□□□ -0.63
LIG3-216ENST00000593099 USP17L5A8MUK1 530 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 FAM160B2Q86V87 743 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 TTC14Q96N46 770 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 ZHX2Q9Y6X8 837 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 RFX7Q2KHR2 1363 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 CCNT1O60563 726 aaKnown RBP11.14□□□□□ -0.63
LIG3-216ENST00000593099 ASIC1P78348 528 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 CETN1Q12798 172 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 RASA3Q14644 834 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 ARHGEF16Q5VV41 709 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 CCDC150Q8NCX0 1101 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 PFKFB2O60825 505 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 SCG2P13521 617 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 AFMP43652 599 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 TTC38Q5R3I4 469 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 FKBP15Q5T1M5 1219 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 HAUS3Q68CZ6 603 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 DPP9Q86TI2 863 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 RASEFQ8IZ41 740 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 AZI2Q9H6S1 392 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 CNPY2Q9Y2B0 182 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 COL14A1Q05707 1796 aaKnown RBP11.14□□□□□ -0.63
LIG3-216ENST00000593099 DISP2A7MBM2 1401 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 CYP2D6P10635 497 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 DGKHQ86XP1 1220 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 TCHPQ9BT92 498 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 KCNJ14Q9UNX9 436 aa11.14□□□□□ -0.63
LIG3-216ENST00000593099 CHMP2AO43633 222 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms