RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 USP20Q9Y2K6 914 aa10.54□□□□□ -0.72
SMAD4-209ENST00000589941 DNMT3AQ9Y6K1 912 aaPredicted RBP10.54□□□□□ -0.72
SMAD4-209ENST00000589941 NPC1L1Q9UHC9 1359 aa10.53□□□□□ -0.72
SMAD4-209ENST00000589941 ADM5C9JUS6 153 aa10.53□□□□□ -0.72
SMAD4-209ENST00000589941 BRD2P25440 801 aaKnown RBP10.53□□□□□ -0.72
SMAD4-209ENST00000589941 TNNT2P45379 298 aaPredicted RBP10.53□□□□□ -0.72
SMAD4-209ENST00000589941 PIP4K2AP48426 406 aaPredicted RBP10.53□□□□□ -0.72
SMAD4-209ENST00000589941 MTMR3Q13615 1198 aa10.53□□□□□ -0.72
SMAD4-209ENST00000589941 AMOTQ4VCS5 1084 aa10.53□□□□□ -0.72
SMAD4-209ENST00000589941 USP48Q86UV5 1035 aa10.53□□□□□ -0.72
SMAD4-209ENST00000589941 NBPF5PQ86XG9 351 aaPredicted RBP10.53□□□□□ -0.72
SMAD4-209ENST00000589941 KLF15Q9UIH9 416 aa10.53□□□□□ -0.72
SMAD4-209ENST00000589941 LAMA3Q16787 3333 aa10.53□□□□□ -0.72
SMAD4-209ENST00000589941 CLSPNQ9HAW4 1339 aa10.53□□□□□ -0.72
SMAD4-209ENST00000589941 RIC1Q4ADV7 1423 aa10.52□□□□□ -0.73
SMAD4-209ENST00000589941 A0A087WZG4 1122 aa10.52□□□□□ -0.73
SMAD4-209ENST00000589941 ZBTB39O15060 712 aa10.52□□□□□ -0.73
SMAD4-209ENST00000589941 ZNF157P51786 506 aaPredicted RBP10.52□□□□□ -0.73
SMAD4-209ENST00000589941 FBXO46Q6PJ61 603 aaPredicted RBP10.52□□□□□ -0.73
SMAD4-209ENST00000589941 RAB44Q7Z6P3 723 aaPredicted RBP10.52□□□□□ -0.73
SMAD4-209ENST00000589941 HELQQ8TDG4 1101 aa10.52□□□□□ -0.73
SMAD4-209ENST00000589941 OXCT2Q9BYC2 517 aaPredicted RBP10.52□□□□□ -0.73
SMAD4-209ENST00000589941 GBA2Q9HCG7 927 aaPredicted RBP10.52□□□□□ -0.73
SMAD4-209ENST00000589941 STIM2Q9P246 746 aa10.52□□□□□ -0.73
SMAD4-209ENST00000589941 LRRC37AA6NMS7 1700 aa10.52□□□□□ -0.73
SMAD4-209ENST00000589941 SCN9AQ15858 1988 aa10.52□□□□□ -0.73
SMAD4-209ENST00000589941 ZSWIM8A7E2V4 1837 aa10.51□□□□□ -0.73
SMAD4-209ENST00000589941 FAM177BA6PVY3 158 aa10.51□□□□□ -0.73
SMAD4-209ENST00000589941 TBC1D8O95759 1140 aa10.51□□□□□ -0.73
SMAD4-209ENST00000589941 EGFRP00533 1210 aa10.51□□□□□ -0.73
SMAD4-209ENST00000589941 CELA2BP08218 269 aaPredicted RBP10.51□□□□□ -0.73
SMAD4-209ENST00000589941 ARSDP51689 593 aa10.51□□□□□ -0.73
SMAD4-209ENST00000589941 CXCL9Q07325 125 aa10.51□□□□□ -0.73
SMAD4-209ENST00000589941 AOC3Q16853 763 aa10.51□□□□□ -0.73
SMAD4-209ENST00000589941 C1orf229Q6ZS94 237 aaPredicted RBP10.51□□□□□ -0.73
SMAD4-209ENST00000589941 RASAL3Q86YV0 1011 aa10.51□□□□□ -0.73
SMAD4-209ENST00000589941 SPTBN5Q9NRC6 3674 aaKnown RBP10.51□□□□□ -0.73
SMAD4-209ENST00000589941 HEG1Q9ULI3 1381 aa10.51□□□□□ -0.73
SMAD4-209ENST00000589941 RNMTO43148 476 aaKnown RBP10.5□□□□□ -0.73
SMAD4-209ENST00000589941 PDE4CQ08493 712 aa10.5□□□□□ -0.73
SMAD4-209ENST00000589941 SPEM2Q0P670 501 aa10.5□□□□□ -0.73
SMAD4-209ENST00000589941 PKN2Q16513 984 aaKnown RBP10.5□□□□□ -0.73
SMAD4-209ENST00000589941 B4GALNT3Q6L9W6 998 aa10.5□□□□□ -0.73
SMAD4-209ENST00000589941 CDC37L1Q7L3B6 337 aa10.5□□□□□ -0.73
SMAD4-209ENST00000589941 NIM1KQ8IY84 436 aa10.5□□□□□ -0.73
SMAD4-209ENST00000589941 ZNF496Q96IT1 587 aaPredicted RBP10.5□□□□□ -0.73
SMAD4-209ENST00000589941 ANO2Q9NQ90 1003 aa10.5□□□□□ -0.73
SMAD4-209ENST00000589941 GGA1Q9UJY5 639 aa10.5□□□□□ -0.73
SMAD4-209ENST00000589941 HDAC9Q9UKV0 1011 aa10.5□□□□□ -0.73
SMAD4-209ENST00000589941 PSME4Q14997 1843 aa10.49□□□□□ -0.73
SMAD4-209ENST00000589941 TCERG1O14776 1098 aaKnown RBP10.49□□□□□ -0.73
SMAD4-209ENST00000589941 A1BGP04217 495 aa10.49□□□□□ -0.73
SMAD4-209ENST00000589941 IL6STP40189 918 aaPredicted RBP10.49□□□□□ -0.73
SMAD4-209ENST00000589941 SERPINB4P48594 390 aa10.49□□□□□ -0.73
SMAD4-209ENST00000589941 PCBP4P57723 403 aaKnown RBP10.49□□□□□ -0.73
SMAD4-209ENST00000589941 ZNF211Q13398 564 aaPredicted RBP10.49□□□□□ -0.73
SMAD4-209ENST00000589941 R3HDMLQ9H3Y0 253 aa10.49□□□□□ -0.73
SMAD4-209ENST00000589941 PRR12Q9ULL5 1215 aa10.49□□□□□ -0.73
SMAD4-209ENST00000589941 PITPNM2Q9BZ72 1349 aa10.49□□□□□ -0.73
SMAD4-209ENST00000589941 ANKRD36CQ5JPF3 1778 aa10.49□□□□□ -0.73
SMAD4-209ENST00000589941 H0YGN5 161 aa10.48□□□□□ -0.73
SMAD4-209ENST00000589941 PPIP5K2O43314 1243 aa10.48□□□□□ -0.73
SMAD4-209ENST00000589941 ARAFP10398 606 aa10.48□□□□□ -0.73
SMAD4-209ENST00000589941 EN2P19622 333 aaPredicted RBP10.48□□□□□ -0.73
SMAD4-209ENST00000589941 ZNF468Q5VIY5 522 aaPredicted RBP10.48□□□□□ -0.73
SMAD4-209ENST00000589941 SULT6B1Q6IMI4 303 aa10.48□□□□□ -0.73
SMAD4-209ENST00000589941 RGL4Q8IZJ4 473 aa10.48□□□□□ -0.73
SMAD4-209ENST00000589941 SVOPQ8N4V2 548 aa10.48□□□□□ -0.73
SMAD4-209ENST00000589941 VCANP13611 3396 aa10.48□□□□□ -0.73
SMAD4-209ENST00000589941 COL4A1P02462 1669 aa10.47□□□□□ -0.73
SMAD4-209ENST00000589941 ZNF646O15015 1829 aaPredicted RBP10.47□□□□□ -0.73
SMAD4-209ENST00000589941 NEURL1BA8MQ27 555 aa10.47□□□□□ -0.73
SMAD4-209ENST00000589941 RAD17O75943 681 aa10.47□□□□□ -0.73
SMAD4-209ENST00000589941 ARHGEF15O94989 841 aa10.47□□□□□ -0.73
SMAD4-209ENST00000589941 STARD3NLO95772 234 aa10.47□□□□□ -0.73
SMAD4-209ENST00000589941 ABL1P00519 1130 aa10.47□□□□□ -0.73
SMAD4-209ENST00000589941 BCRP11274 1271 aa10.47□□□□□ -0.73
SMAD4-209ENST00000589941 MPSTP25325 297 aa10.47□□□□□ -0.73
SMAD4-209ENST00000589941 ARID4AP29374 1257 aaPredicted RBP10.47□□□□□ -0.73
SMAD4-209ENST00000589941 CRY2Q49AN0 593 aa10.47□□□□□ -0.73
SMAD4-209ENST00000589941 KRT26Q7Z3Y9 468 aa10.47□□□□□ -0.73
SMAD4-209ENST00000589941 SYT9Q86SS6 491 aa10.47□□□□□ -0.73
SMAD4-209ENST00000589941 ATCAYQ86WG3 371 aa10.47□□□□□ -0.73
SMAD4-209ENST00000589941 FCHSD1Q86WN1 690 aa10.47□□□□□ -0.73
SMAD4-209ENST00000589941 GSX2Q9BZM3 304 aa10.47□□□□□ -0.73
SMAD4-209ENST00000589941 ASTN2O75129 1339 aaPredicted RBP10.47□□□□□ -0.73
SMAD4-209ENST00000589941 ZAP70P43403 619 aa10.46□□□□□ -0.73
SMAD4-209ENST00000589941 C2orf69Q8N8R5 385 aa10.46□□□□□ -0.73
SMAD4-209ENST00000589941 CDHR2Q9BYE9 1310 aa10.46□□□□□ -0.73
SMAD4-209ENST00000589941 EYSQ5T1H1 3165 aa10.46□□□□□ -0.74
SMAD4-209ENST00000589941 ZNF609O15014 1411 aa10.45□□□□□ -0.74
SMAD4-209ENST00000589941 YDJCA8MPS7 323 aa10.45□□□□□ -0.74
SMAD4-209ENST00000589941 OIP5O43482 229 aa10.45□□□□□ -0.74
SMAD4-209ENST00000589941 EPB42P16452 691 aa10.45□□□□□ -0.74
SMAD4-209ENST00000589941 ALDH1B1P30837 517 aa10.45□□□□□ -0.74
SMAD4-209ENST00000589941 CMTR1Q8N1G2 835 aaKnown RBP10.45□□□□□ -0.74
SMAD4-209ENST00000589941 GOLGA6L1Q8N7Z2 621 aa10.45□□□□□ -0.74
SMAD4-209ENST00000589941 BHMTQ93088 406 aa10.45□□□□□ -0.74
SMAD4-209ENST00000589941 GDF2Q9UK05 429 aaPredicted RBP10.45□□□□□ -0.74
SMAD4-209ENST00000589941 MTMR7Q9Y216 660 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms