RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 TBC1D32Q96NH3 1257 aa5.12□□□□□ -1.59
LIG3-211ENST00000588713 NAP1L5Q96NT1 182 aaPredicted RBP5.12□□□□□ -1.59
LIG3-211ENST00000588713 THUMPD2Q9BTF0 503 aaKnown RBP5.12□□□□□ -1.59
LIG3-211ENST00000588713 FSD1Q9BTV5 496 aa5.12□□□□□ -1.59
LIG3-211ENST00000588713 SEC31BQ9NQW1 1179 aa5.12□□□□□ -1.59
LIG3-211ENST00000588713 WDR70Q9NW82 654 aa5.12□□□□□ -1.59
LIG3-211ENST00000588713 ZNF70Q9UC06 446 aaPredicted RBP5.12□□□□□ -1.59
LIG3-211ENST00000588713 NCOR2Q9Y618 2525 aa5.12□□□□□ -1.59
LIG3-211ENST00000588713 SIPA1L3O60292 1781 aaPredicted RBP5.11□□□□□ -1.59
LIG3-211ENST00000588713 TPRP12270 2363 aaKnown RBP5.11□□□□□ -1.59
LIG3-211ENST00000588713 E9PSI1 815 aa5.11□□□□□ -1.59
LIG3-211ENST00000588713 PQBP1O60828 265 aaKnown RBP5.11□□□□□ -1.59
LIG3-211ENST00000588713 RNF40O75150 1001 aa5.11□□□□□ -1.59
LIG3-211ENST00000588713 ACRP10323 421 aa5.11□□□□□ -1.59
LIG3-211ENST00000588713 KCNA5P22460 613 aa5.11□□□□□ -1.59
LIG3-211ENST00000588713 INPP5BP32019 993 aa5.11□□□□□ -1.59
LIG3-211ENST00000588713 SLC4A3P48751 1232 aa5.11□□□□□ -1.59
LIG3-211ENST00000588713 SLFN5Q08AF3 891 aa5.11□□□□□ -1.59
LIG3-211ENST00000588713 HSP90AA2PQ14568 343 aaPredicted RBP5.11□□□□□ -1.59
LIG3-211ENST00000588713 SF3B3Q15393 1217 aaKnown RBP5.11□□□□□ -1.59
LIG3-211ENST00000588713 E2F4Q16254 413 aa5.11□□□□□ -1.59
LIG3-211ENST00000588713 PTCRAQ6ISU1 281 aaPredicted RBP5.11□□□□□ -1.59
LIG3-211ENST00000588713 MIGA2Q7L4E1 593 aa5.11□□□□□ -1.59
LIG3-211ENST00000588713 TATDN2Q93075 761 aa5.11□□□□□ -1.59
LIG3-211ENST00000588713 FERMT2Q96AC1 680 aa5.11□□□□□ -1.59
LIG3-211ENST00000588713 CCDC85AQ96PX6 553 aaPredicted RBP5.11□□□□□ -1.59
LIG3-211ENST00000588713 COA1Q9GZY4 146 aa5.11□□□□□ -1.59
LIG3-211ENST00000588713 IRF2BPLQ9H1B7 796 aa5.11□□□□□ -1.59
LIG3-211ENST00000588713 TDRD3Q9H7E2 651 aaKnown RBP5.11□□□□□ -1.59
LIG3-211ENST00000588713 MUTYHQ9UIF7 546 aa5.11□□□□□ -1.59
LIG3-211ENST00000588713 GJD2Q9UKL4 321 aa5.11□□□□□ -1.59
LIG3-211ENST00000588713 JAG2Q9Y219 1238 aa5.11□□□□□ -1.59
LIG3-211ENST00000588713 DAGLAQ9Y4D2 1042 aa5.11□□□□□ -1.59
LIG3-211ENST00000588713 TACC3Q9Y6A5 838 aa5.11□□□□□ -1.59
LIG3-211ENST00000588713 RPAP1Q9BWH6 1393 aaPredicted RBP5.11□□□□□ -1.59
LIG3-211ENST00000588713 MED23Q9ULK4 1368 aa5.11□□□□□ -1.59
LIG3-211ENST00000588713 SETXQ7Z333 2677 aaKnown RBP5.1□□□□□ -1.59
LIG3-211ENST00000588713 CHD6Q8TD26 2715 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 CHD9Q3L8U1 2897 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 TMEM221A6NGB7 291 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 EPOPA6NHQ4 379 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 KBTBD13C9JR72 458 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 PROB1E7EW31 1015 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 M0R296 226 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 ZNF536O15090 1300 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 TNNI2P48788 182 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 RGS3P49796 1198 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 PLXNA3P51805 1871 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 VCPP55072 806 aaKnown RBP5.1□□□□□ -1.59
LIG3-211ENST00000588713 PUM1Q14671 1186 aaKnown RBP eCLIP5.1□□□□□ -1.59
LIG3-211ENST00000588713 LAPTM4AQ15012 233 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 CCL14Q16627 93 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 FAM110CQ1W6H9 321 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 CDCA8Q53HL2 280 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 EPHA10Q5JZY3 1008 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 CCDC174Q6PII3 467 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 TXNRD3Q86VQ6 643 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 SKAP1Q86WV1 359 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 KIAA2013Q8IYS2 634 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 CERS5Q8N5B7 392 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 GAS2L2Q8NHY3 880 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.1□□□□□ -1.59
LIG3-211ENST00000588713 LPAR1Q92633 364 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 NKD2Q969F2 451 aaPredicted RBP5.1□□□□□ -1.59
LIG3-211ENST00000588713 CLUAP1Q96AJ1 413 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 FAM89AQ96GI7 184 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 UBE2ZQ9H832 354 aaPredicted RBP5.1□□□□□ -1.59
LIG3-211ENST00000588713 TMEM39AQ9NV64 488 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 DDX20Q9UHI6 824 aaKnown RBP5.1□□□□□ -1.59
LIG3-211ENST00000588713 PNMA3Q9UL41 463 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 CHD7Q9P2D1 2997 aa5.1□□□□□ -1.59
LIG3-211ENST00000588713 GAKO14976 1311 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 ANXA1P04083 346 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 KLRK1P26718 216 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 PPP2R1AP30153 589 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 MCM4P33991 863 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 ADCYAP1R1P41586 468 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 TERF1P54274 439 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 CACNB3P54284 484 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 CNGB1Q14028 1251 aaPredicted RBP5.09□□□□□ -1.59
LIG3-211ENST00000588713 SNX17Q15036 470 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 LEXMQ3ZCV2 418 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 HSP90AB3PQ58FF7 597 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 TMEM240Q5SV17 173 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 ANO1Q5XXA6 986 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 ZNF365Q70YC5 407 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 FASTKD5Q7L8L6 764 aaKnown RBP5.09□□□□□ -1.59
LIG3-211ENST00000588713 FRMD5Q7Z6J6 570 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 ARNTL2Q8WYA1 636 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 MTRQ99707 1265 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 NUDT12Q9BQG2 462 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 PRKD2Q9BZL6 878 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 IL21Q9HBE4 155 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 MIS18AQ9NYP9 233 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 CHMP5Q9NZZ3 219 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 FAM198AQ9UFP1 575 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 FASNP49327 2511 aaKnown RBP5.09□□□□□ -1.59
LIG3-211ENST00000588713 GPR179Q6PRD1 2367 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 MYO15AQ9UKN7 3530 aa5.09□□□□□ -1.59
LIG3-211ENST00000588713 ECM29Q5VYK3 1845 aa5.09□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms