RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-222ENST00000582792 USP17L11C9JVI0 530 aa16.56■□□□□ 0.24
SS18-222ENST00000582792 USP17L18D6R9N7 530 aa16.56■□□□□ 0.24
SS18-222ENST00000582792 USP17L22D6RA61 530 aa16.56■□□□□ 0.24
SS18-222ENST00000582792 USP17L17D6RBQ6 530 aa16.56■□□□□ 0.24
SS18-222ENST00000582792 USP17L19D6RCP7 530 aa16.56■□□□□ 0.24
SS18-222ENST00000582792 USP17L20D6RJB6 530 aa16.56■□□□□ 0.24
SS18-222ENST00000582792 SURF6O75683 361 aaKnown RBP16.56■□□□□ 0.24
SS18-222ENST00000582792 CNMDO75829 334 aa16.56■□□□□ 0.24
SS18-222ENST00000582792 ATP8B2P98198 1209 aa16.56■□□□□ 0.24
SS18-222ENST00000582792 USP17L24Q0WX57 530 aa16.56■□□□□ 0.24
SS18-222ENST00000582792 MAP2K5Q13163 448 aa16.56■□□□□ 0.24
SS18-222ENST00000582792 LRRC26Q2I0M4 334 aa16.56■□□□□ 0.24
SS18-222ENST00000582792 Q7L0L9 218 aa16.56■□□□□ 0.24
SS18-222ENST00000582792 CERS3Q8IU89 383 aa16.56■□□□□ 0.24
SS18-222ENST00000582792 DBNLQ9UJU6 430 aaKnown RBP16.56■□□□□ 0.24
SS18-222ENST00000582792 FRMPD3Q5JV73 1810 aa16.56■□□□□ 0.24
SS18-222ENST00000582792 GLRX3O76003 335 aaKnown RBP16.55■□□□□ 0.24
SS18-222ENST00000582792 CCNA1P78396 465 aa16.55■□□□□ 0.24
SS18-222ENST00000582792 ZYXQ15942 572 aaKnown RBP16.55■□□□□ 0.24
SS18-222ENST00000582792 EDC3Q96F86 508 aaKnown RBP16.55■□□□□ 0.24
SS18-222ENST00000582792 FEZ1Q99689 392 aa16.55■□□□□ 0.24
SS18-222ENST00000582792 EHD4Q9H223 541 aa16.55■□□□□ 0.24
SS18-222ENST00000582792 CWC22Q9HCG8 908 aaKnown RBP16.55■□□□□ 0.24
SS18-222ENST00000582792 TLR7Q9NYK1 1049 aaKnown RBP16.55■□□□□ 0.24
SS18-222ENST00000582792 SERPINB13Q9UIV8 391 aa16.55■□□□□ 0.24
SS18-222ENST00000582792 STXBP5LQ9Y2K9 1186 aa16.55■□□□□ 0.24
SS18-222ENST00000582792 NOP58Q9Y2X3 529 aaKnown RBP16.55■□□□□ 0.24
SS18-222ENST00000582792 IDH1O75874 414 aaKnown RBP16.54■□□□□ 0.24
SS18-222ENST00000582792 USP5P45974 858 aa16.54■□□□□ 0.24
SS18-222ENST00000582792 USP14P54578 494 aa16.54■□□□□ 0.24
SS18-222ENST00000582792 MFSD14CQ5VZR4 134 aa16.54■□□□□ 0.24
SS18-222ENST00000582792 ZKSCAN2Q63HK3 967 aa16.54■□□□□ 0.24
SS18-222ENST00000582792 LBX2Q6XYB7 198 aa16.54■□□□□ 0.24
SS18-222ENST00000582792 CATSPERGQ6ZRH7 1159 aa16.54■□□□□ 0.24
SS18-222ENST00000582792 MIGA1Q8NAN2 632 aa16.54■□□□□ 0.24
SS18-222ENST00000582792 KIAA1683Q9H0B3 1180 aa16.54■□□□□ 0.24
SS18-222ENST00000582792 MTMR10Q9NXD2 777 aa16.54■□□□□ 0.24
SS18-222ENST00000582792 SLC15A5A6NIM6 579 aa16.53■□□□□ 0.24
SS18-222ENST00000582792 VCAM1P19320 739 aa16.53■□□□□ 0.24
SS18-222ENST00000582792 PTPREP23469 700 aa16.53■□□□□ 0.24
SS18-222ENST00000582792 TTC6Q86TZ1 520 aa16.53■□□□□ 0.24
SS18-222ENST00000582792 MAGEB6Q8N7X4 407 aa16.53■□□□□ 0.24
SS18-222ENST00000582792 EAF2Q96CJ1 260 aaPredicted RBP16.53■□□□□ 0.24
SS18-222ENST00000582792 CCDC8Q9H0W5 538 aaPredicted RBP16.53■□□□□ 0.24
SS18-222ENST00000582792 FLRT1Q9NZU1 646 aa16.53■□□□□ 0.24
SS18-222ENST00000582792 HOXC6P09630 235 aa16.52■□□□□ 0.24
SS18-222ENST00000582792 MDM2Q00987 491 aaPredicted RBP16.52■□□□□ 0.24
SS18-222ENST00000582792 RAB3GAP1Q15042 981 aa16.52■□□□□ 0.24
SS18-222ENST00000582792 ABCB5Q2M3G0 1257 aa16.52■□□□□ 0.24
SS18-222ENST00000582792 CERKLQ49MI3 558 aaPredicted RBP16.52■□□□□ 0.24
SS18-222ENST00000582792 WDR78Q5VTH9 848 aa16.52■□□□□ 0.24
SS18-222ENST00000582792 TMED8Q6PL24 325 aaPredicted RBP16.52■□□□□ 0.24
SS18-222ENST00000582792 ACER1Q8TDN7 264 aa16.52■□□□□ 0.24
SS18-222ENST00000582792 C1orf115Q9H7X2 142 aa16.52■□□□□ 0.24
SS18-222ENST00000582792 BTBD7Q9P203 1132 aa16.52■□□□□ 0.24
SS18-222ENST00000582792 NDUFB9Q9Y6M9 179 aa16.52■□□□□ 0.24
SS18-222ENST00000582792 MSCO60682 206 aa16.51■□□□□ 0.23
SS18-222ENST00000582792 GRB14Q14449 540 aa16.51■□□□□ 0.23
SS18-222ENST00000582792 SENP6Q9GZR1 1112 aaPredicted RBP16.51■□□□□ 0.23
SS18-222ENST00000582792 CABP5Q9NP86 173 aa16.51■□□□□ 0.23
SS18-222ENST00000582792 DDX20Q9UHI6 824 aaKnown RBP16.51■□□□□ 0.23
SS18-222ENST00000582792 IVNS1ABPQ9Y6Y0 642 aa16.51■□□□□ 0.23
SS18-222ENST00000582792 SPDYE16A6NNV3 312 aaPredicted RBP16.5■□□□□ 0.23
SS18-222ENST00000582792 SHMT1P34896 483 aa16.5■□□□□ 0.23
SS18-222ENST00000582792 ATP2B2Q01814 1243 aa16.5■□□□□ 0.23
SS18-222ENST00000582792 MAP3K12Q12852 859 aa16.5■□□□□ 0.23
SS18-222ENST00000582792 NPLOC4Q8TAT6 608 aa16.5■□□□□ 0.23
SS18-222ENST00000582792 LPAR1Q92633 364 aa16.5■□□□□ 0.23
SS18-222ENST00000582792 RPAP3Q9H6T3 665 aaPredicted RBP16.5■□□□□ 0.23
SS18-222ENST00000582792 ANTXR1Q9H6X2 564 aa16.5■□□□□ 0.23
SS18-222ENST00000582792 IGHA2P01877 340 aa16.49■□□□□ 0.23
SS18-222ENST00000582792 CNGA1P29973 690 aa16.49■□□□□ 0.23
SS18-222ENST00000582792 GUCY1A2P33402 732 aa16.49■□□□□ 0.23
SS18-222ENST00000582792 PLCD1P51178 756 aa16.49■□□□□ 0.23
SS18-222ENST00000582792 RIOK1Q9BRS2 568 aaKnown RBP16.49■□□□□ 0.23
SS18-222ENST00000582792 ZNF236Q9UL36 1845 aa16.48■□□□□ 0.23
SS18-222ENST00000582792 DNM1LO00429 736 aa16.48■□□□□ 0.23
SS18-222ENST00000582792 CYP2C19P33261 490 aa16.48■□□□□ 0.23
SS18-222ENST00000582792 FAM109BQ6ICB4 259 aaPredicted RBP16.48■□□□□ 0.23
SS18-222ENST00000582792 LBHD1Q9BQE6 289 aaPredicted RBP16.48■□□□□ 0.23
SS18-222ENST00000582792 NAV1Q8NEY1 1877 aa16.48■□□□□ 0.23
SS18-222ENST00000582792 EYSQ5T1H1 3165 aa16.47■□□□□ 0.23
SS18-222ENST00000582792 POTEB2H3BUK9 544 aa16.47■□□□□ 0.23
SS18-222ENST00000582792 POLR3DP05423 398 aaPredicted RBP16.47■□□□□ 0.23
SS18-222ENST00000582792 CYBAP13498 195 aa16.47■□□□□ 0.23
SS18-222ENST00000582792 ATN1P54259 1190 aaPredicted RBP16.47■□□□□ 0.23
SS18-222ENST00000582792 GABPAQ06546 454 aa16.47■□□□□ 0.23
SS18-222ENST00000582792 SEPT2Q15019 361 aa16.47■□□□□ 0.23
SS18-222ENST00000582792 FTSJ3Q8IY81 847 aaKnown RBP16.47■□□□□ 0.23
SS18-222ENST00000582792 TRPV1Q8NER1 839 aa16.47■□□□□ 0.23
SS18-222ENST00000582792 A0A0G2JMZ2 1700 aa16.46■□□□□ 0.23
SS18-222ENST00000582792 MAGEB6P1A0A0J9YX57 407 aa16.46■□□□□ 0.23
SS18-222ENST00000582792 COG2Q14746 738 aa16.46■□□□□ 0.23
SS18-222ENST00000582792 OLFML2BQ68BL8 750 aa16.46■□□□□ 0.23
SS18-222ENST00000582792 CEP85Q6P2H3 762 aa16.46■□□□□ 0.23
SS18-222ENST00000582792 DPP9Q86TI2 863 aa16.46■□□□□ 0.23
SS18-222ENST00000582792 AACSQ86V21 672 aa16.46■□□□□ 0.23
SS18-222ENST00000582792 ITPRIPQ8IWB1 547 aa16.46■□□□□ 0.23
SS18-222ENST00000582792 MOV10L1Q9BXT6 1211 aaKnown RBP16.46■□□□□ 0.23
SS18-222ENST00000582792 HOXC10Q9NYD6 342 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms