RNA–Protein interactions for RNA: ENST00000580745.5

PPP4R1-218, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 4

Gene PPP4R1, Length 535 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-218	ENST00000580745	LRRCC1	Q9C099	1032 aa		13.46	□□□□□ -0.25
PPP4R1-218	ENST00000580745	COLQ	Q9Y215	455 aa	Predicted RBP	13.46	□□□□□ -0.25
PPP4R1-218	ENST00000580745	TFRC	P02786	760 aa	Known RBP	13.45	□□□□□ -0.26
PPP4R1-218	ENST00000580745	VCAM1	P19320	739 aa		13.45	□□□□□ -0.26
PPP4R1-218	ENST00000580745	ERVK-9	P63128	1117 aa		13.45	□□□□□ -0.26
PPP4R1-218	ENST00000580745	ERVK-24	P63145	666 aa		13.45	□□□□□ -0.26
PPP4R1-218	ENST00000580745	KIAA1755	Q5JYT7	1200 aa		13.45	□□□□□ -0.26
PPP4R1-218	ENST00000580745	DIS3L	Q8TF46	1054 aa	Known RBP	13.45	□□□□□ -0.26
PPP4R1-218	ENST00000580745	TRIB2	Q92519	343 aa		13.45	□□□□□ -0.26
PPP4R1-218	ENST00000580745	C12orf42	Q96LP6	360 aa		13.45	□□□□□ -0.26
PPP4R1-218	ENST00000580745	KIAA1683	Q9H0B3	1180 aa		13.45	□□□□□ -0.26
PPP4R1-218	ENST00000580745	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	13.45	□□□□□ -0.26	1e-10	■■■■■ 31.6
PPP4R1-218	ENST00000580745	CHMP4B	Q9H444	224 aa	Known RBP	13.45	□□□□□ -0.26
PPP4R1-218	ENST00000580745	CABP5	Q9NP86	173 aa		13.45	□□□□□ -0.26
PPP4R1-218	ENST00000580745	PAK6	Q9NQU5	681 aa	Predicted RBP	13.45	□□□□□ -0.26
PPP4R1-218	ENST00000580745	USP17L15	C9J2P7	530 aa		13.44	□□□□□ -0.26
PPP4R1-218	ENST00000580745	USP17L13	C9JLJ4	530 aa		13.44	□□□□□ -0.26
PPP4R1-218	ENST00000580745	USP17L11	C9JVI0	530 aa		13.44	□□□□□ -0.26
PPP4R1-218	ENST00000580745	USP17L18	D6R9N7	530 aa		13.44	□□□□□ -0.26
PPP4R1-218	ENST00000580745	USP17L22	D6RA61	530 aa		13.44	□□□□□ -0.26
PPP4R1-218	ENST00000580745	USP17L17	D6RBQ6	530 aa		13.44	□□□□□ -0.26
PPP4R1-218	ENST00000580745	USP17L19	D6RCP7	530 aa		13.44	□□□□□ -0.26
PPP4R1-218	ENST00000580745	USP17L20	D6RJB6	530 aa		13.44	□□□□□ -0.26
PPP4R1-218	ENST00000580745	HMGCR	P04035	888 aa		13.44	□□□□□ -0.26
PPP4R1-218	ENST00000580745	AKR1B1	P15121	316 aa		13.44	□□□□□ -0.26
PPP4R1-218	ENST00000580745	USP17L24	Q0WX57	530 aa		13.44	□□□□□ -0.26
PPP4R1-218	ENST00000580745	CCL14	Q16627	93 aa		13.44	□□□□□ -0.26
PPP4R1-218	ENST00000580745	TMED8	Q6PL24	325 aa	Predicted RBP	13.44	□□□□□ -0.26
PPP4R1-218	ENST00000580745	CATSPERG	Q6ZRH7	1159 aa		13.44	□□□□□ -0.26
PPP4R1-218	ENST00000580745	PUS7L	Q9H0K6	701 aa	Known RBP	13.44	□□□□□ -0.26
PPP4R1-218	ENST00000580745	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.44	□□□□□ -0.26
PPP4R1-218	ENST00000580745	BTBD7	Q9P203	1132 aa		13.44	□□□□□ -0.26
PPP4R1-218	ENST00000580745	LOC285556	D6RIA3	1793 aa		13.43	□□□□□ -0.26
PPP4R1-218	ENST00000580745	USP17L12	C9JPN9	530 aa		13.43	□□□□□ -0.26
PPP4R1-218	ENST00000580745	USP17L21	D6R901	530 aa		13.43	□□□□□ -0.26
PPP4R1-218	ENST00000580745	USP14	P54578	494 aa		13.43	□□□□□ -0.26
PPP4R1-218	ENST00000580745	GPR142	Q7Z601	462 aa		13.43	□□□□□ -0.26
PPP4R1-218	ENST00000580745	SIAH1	Q8IUQ4	282 aa		13.43	□□□□□ -0.26
PPP4R1-218	ENST00000580745	GCC1	Q96CN9	775 aa		13.43	□□□□□ -0.26
PPP4R1-218	ENST00000580745	PAWR	Q96IZ0	340 aa	Known RBP	13.43	□□□□□ -0.26
PPP4R1-218	ENST00000580745	NUDT12	Q9BQG2	462 aa		13.43	□□□□□ -0.26
PPP4R1-218	ENST00000580745	CRISPLD2	Q9H0B8	497 aa		13.43	□□□□□ -0.26
PPP4R1-218	ENST00000580745	PCDH10	Q9P2E7	1040 aa		13.43	□□□□□ -0.26
PPP4R1-218	ENST00000580745	MYO5A	Q9Y4I1	1855 aa	Known RBP	13.43	□□□□□ -0.26
PPP4R1-218	ENST00000580745	PCDHB15	Q9Y5E8	787 aa		13.43	□□□□□ -0.26
PPP4R1-218	ENST00000580745	RBBP6	Q7Z6E9	1792 aa	Known RBP	13.43	□□□□□ -0.26
PPP4R1-218	ENST00000580745	SPDYE16	A6NNV3	312 aa	Predicted RBP	13.42	□□□□□ -0.26
PPP4R1-218	ENST00000580745	PRKAR2A	P13861	404 aa	Known RBP	13.42	□□□□□ -0.26
PPP4R1-218	ENST00000580745	MAPK4	P31152	587 aa		13.42	□□□□□ -0.26
PPP4R1-218	ENST00000580745	MORN1	Q5T089	497 aa		13.42	□□□□□ -0.26
PPP4R1-218	ENST00000580745	C12orf60	Q5U649	245 aa		13.42	□□□□□ -0.26
PPP4R1-218	ENST00000580745	WDR78	Q5VTH9	848 aa		13.42	□□□□□ -0.26
PPP4R1-218	ENST00000580745	CHRDL2	Q6WN34	429 aa		13.42	□□□□□ -0.26
PPP4R1-218	ENST00000580745	PLEKHH3	Q7Z736	793 aa		13.42	□□□□□ -0.26
PPP4R1-218	ENST00000580745	CCAR1	Q8IX12	1150 aa	Known RBP	13.42	□□□□□ -0.26
PPP4R1-218	ENST00000580745	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.42	□□□□□ -0.26
PPP4R1-218	ENST00000580745	USP6NL	Q92738	828 aa		13.42	□□□□□ -0.26
PPP4R1-218	ENST00000580745	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	13.42	□□□□□ -0.26	1e-7	■■□□□ 12.7
PPP4R1-218	ENST00000580745	DCTPP1	Q9H773	170 aa		13.42	□□□□□ -0.26
PPP4R1-218	ENST00000580745	ECHDC1	Q9NTX5	307 aa		13.42	□□□□□ -0.26
PPP4R1-218	ENST00000580745	SLC4A4	Q9Y6R1	1079 aa		13.42	□□□□□ -0.26
PPP4R1-218	ENST00000580745	PTPRF	P10586	1907 aa		13.42	□□□□□ -0.26
PPP4R1-218	ENST00000580745	RPTOR	Q8N122	1335 aa		13.41	□□□□□ -0.26
PPP4R1-218	ENST00000580745	CDK8	P49336	464 aa		13.41	□□□□□ -0.26
PPP4R1-218	ENST00000580745	MNX1	P50219	401 aa	Predicted RBP	13.41	□□□□□ -0.26
PPP4R1-218	ENST00000580745	UBE3C	Q15386	1083 aa		13.41	□□□□□ -0.26
PPP4R1-218	ENST00000580745	STK11IP	Q8N1F8	1099 aa		13.41	□□□□□ -0.26
PPP4R1-218	ENST00000580745	HMX1	Q9NP08	348 aa	Predicted RBP	13.41	□□□□□ -0.26
PPP4R1-218	ENST00000580745	ATP8A2	Q9NTI2	1148 aa		13.41	□□□□□ -0.26
PPP4R1-218	ENST00000580745	RABGAP1	Q9Y3P9	1069 aa		13.41	□□□□□ -0.26
PPP4R1-218	ENST00000580745	ZKSCAN1	P17029	563 aa	Predicted RBP	13.4	□□□□□ -0.26
PPP4R1-218	ENST00000580745	CCND3	P30281	292 aa	Predicted RBP	13.4	□□□□□ -0.26
PPP4R1-218	ENST00000580745	CACNB2	Q08289	660 aa	Predicted RBP	13.4	□□□□□ -0.26
PPP4R1-218	ENST00000580745	MAP3K21	Q5TCX8	1036 aa		13.4	□□□□□ -0.26
PPP4R1-218	ENST00000580745	CTR9	Q6PD62	1173 aa		13.4	□□□□□ -0.26
PPP4R1-218	ENST00000580745	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.4	□□□□□ -0.26
PPP4R1-218	ENST00000580745	TMEM179	Q6ZVK1	233 aa		13.4	□□□□□ -0.26
PPP4R1-218	ENST00000580745	SPICE1	Q8N0Z3	855 aa		13.4	□□□□□ -0.26
PPP4R1-218	ENST00000580745	GTF3C2	Q8WUA4	911 aa	Predicted RBP	13.4	□□□□□ -0.26
PPP4R1-218	ENST00000580745	SOCS4	Q8WXH5	440 aa		13.4	□□□□□ -0.26
PPP4R1-218	ENST00000580745	OSBP2	Q969R2	916 aa		13.4	□□□□□ -0.26
PPP4R1-218	ENST00000580745	HTATIP2	Q9BUP3	242 aa		13.4	□□□□□ -0.26
PPP4R1-218	ENST00000580745	CWC22	Q9HCG8	908 aa	Known RBP	13.4	□□□□□ -0.26
PPP4R1-218	ENST00000580745	FLRT1	Q9NZU1	646 aa		13.4	□□□□□ -0.26
PPP4R1-218	ENST00000580745	SWAP70	Q9UH65	585 aa		13.4	□□□□□ -0.26
PPP4R1-218	ENST00000580745	XRCC5	P13010	732 aa	Known RBP	13.39	□□□□□ -0.27
PPP4R1-218	ENST00000580745	RGS2	P41220	211 aa		13.39	□□□□□ -0.27
PPP4R1-218	ENST00000580745	FXR1	P51114	621 aa	Known RBP eCLIP	13.39	□□□□□ -0.27
PPP4R1-218	ENST00000580745	ATP2B2	Q01814	1243 aa		13.39	□□□□□ -0.27
PPP4R1-218	ENST00000580745	ICA1	Q05084	483 aa		13.39	□□□□□ -0.27
PPP4R1-218	ENST00000580745	STRBP	Q96SI9	672 aa	Known RBP	13.39	□□□□□ -0.27
PPP4R1-218	ENST00000580745	TANGO6	Q9C0B7	1094 aa		13.39	□□□□□ -0.27
PPP4R1-218	ENST00000580745	RBM27	Q9P2N5	1060 aa	Known RBP	13.39	□□□□□ -0.27
PPP4R1-218	ENST00000580745	ATAD5	Q96QE3	1844 aa		13.39	□□□□□ -0.27
PPP4R1-218	ENST00000580745	PTPRE	P23469	700 aa		13.38	□□□□□ -0.27
PPP4R1-218	ENST00000580745	MAP2K5	Q13163	448 aa		13.38	□□□□□ -0.27
PPP4R1-218	ENST00000580745	LBX2	Q6XYB7	198 aa		13.38	□□□□□ -0.27
PPP4R1-218	ENST00000580745	C16orf86	Q6ZW13	317 aa		13.38	□□□□□ -0.27
PPP4R1-218	ENST00000580745	KBTBD3	Q8NAB2	608 aa		13.38	□□□□□ -0.27
PPP4R1-218	ENST00000580745	NPLOC4	Q8TAT6	608 aa		13.38	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms