RNA–Protein interactions for RNA: ENST00000580054.1

SMARCD2-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 5

Gene SMARCD2, Length 477 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-208ENST00000580054 HOXC6P09630 235 aa11.47□□□□□ -0.57
SMARCD2-208ENST00000580054 DNAJB2P25686 324 aa11.47□□□□□ -0.57
SMARCD2-208ENST00000580054 ATP2B2Q01814 1243 aa11.47□□□□□ -0.57
SMARCD2-208ENST00000580054 GRB14Q14449 540 aa11.47□□□□□ -0.57
SMARCD2-208ENST00000580054 MAPKAPK5Q8IW41 473 aa11.47□□□□□ -0.57
SMARCD2-208ENST00000580054 GTF3C2Q8WUA4 911 aaPredicted RBP11.47□□□□□ -0.57
SMARCD2-208ENST00000580054 PPM1EQ8WY54 764 aa11.47□□□□□ -0.57
SMARCD2-208ENST00000580054 FERMT2Q96AC1 680 aa11.47□□□□□ -0.57
SMARCD2-208ENST00000580054 FAM122AQ96E09 287 aa11.47□□□□□ -0.57
SMARCD2-208ENST00000580054 XAGE2Q96GT9 111 aa11.47□□□□□ -0.57
SMARCD2-208ENST00000580054 HMG20BQ9P0W2 317 aa11.47□□□□□ -0.57
SMARCD2-208ENST00000580054 BTBD7Q9P203 1132 aa11.47□□□□□ -0.57
SMARCD2-208ENST00000580054 PI4KBQ9UBF8 816 aa11.47□□□□□ -0.57
SMARCD2-208ENST00000580054 RABGAP1Q9Y3P9 1069 aa11.47□□□□□ -0.57
SMARCD2-208ENST00000580054 ZNFX1Q9P2E3 1918 aaKnown RBP11.47□□□□□ -0.57
SMARCD2-208ENST00000580054 FLT1P17948 1338 aa11.46□□□□□ -0.57
SMARCD2-208ENST00000580054 GLRX3O76003 335 aaKnown RBP11.46□□□□□ -0.57
SMARCD2-208ENST00000580054 ADCYAP1R1P41586 468 aa11.46□□□□□ -0.57
SMARCD2-208ENST00000580054 USP17L2Q6R6M4 530 aa11.46□□□□□ -0.57
SMARCD2-208ENST00000580054 ADAMTS19Q8TE59 1207 aa11.46□□□□□ -0.57
SMARCD2-208ENST00000580054 SSH1Q8WYL5 1049 aa11.46□□□□□ -0.57
SMARCD2-208ENST00000580054 RAI14Q9P0K7 980 aa11.46□□□□□ -0.57
SMARCD2-208ENST00000580054 MAP4K4O95819 1239 aaPredicted RBP11.45□□□□□ -0.58
SMARCD2-208ENST00000580054 LDHCP07864 332 aa11.45□□□□□ -0.58
SMARCD2-208ENST00000580054 UBTFL1P0CB47 393 aaPredicted RBP11.45□□□□□ -0.58
SMARCD2-208ENST00000580054 CCNA1P78396 465 aa11.45□□□□□ -0.58
SMARCD2-208ENST00000580054 GSTO1P78417 241 aa11.45□□□□□ -0.58
SMARCD2-208ENST00000580054 TLE2Q04725 743 aa11.45□□□□□ -0.58
SMARCD2-208ENST00000580054 MAP3K12Q12852 859 aa11.45□□□□□ -0.58
SMARCD2-208ENST00000580054 FAM47AQ5JRC9 791 aa11.45□□□□□ -0.58
SMARCD2-208ENST00000580054 CRACR2BQ8N4Y2 399 aaPredicted RBP11.45□□□□□ -0.58
SMARCD2-208ENST00000580054 SPATA5Q8NB90 893 aa11.45□□□□□ -0.58
SMARCD2-208ENST00000580054 ARRDC4Q8NCT1 418 aa11.45□□□□□ -0.58
SMARCD2-208ENST00000580054 TGFBRAP1Q8WUH2 860 aa11.45□□□□□ -0.58
SMARCD2-208ENST00000580054 ZNF576Q9H609 170 aa11.45□□□□□ -0.58
SMARCD2-208ENST00000580054 AATFQ9NY61 560 aaKnown RBP eCLIP11.45□□□□□ -0.58
SMARCD2-208ENST00000580054 SAP30BPQ9UHR5 308 aaKnown RBP11.45□□□□□ -0.58
SMARCD2-208ENST00000580054 PALD1Q9ULE6 856 aa11.45□□□□□ -0.58
SMARCD2-208ENST00000580054 CHD9Q3L8U1 2897 aa11.45□□□□□ -0.58
SMARCD2-208ENST00000580054 REV3LO60673 3130 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 SPDYE16A6NNV3 312 aaPredicted RBP11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 USP17L15C9J2P7 530 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 USP17L13C9JLJ4 530 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 USP17L11C9JVI0 530 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 USP17L18D6R9N7 530 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 USP17L22D6RA61 530 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 USP17L17D6RBQ6 530 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 USP17L19D6RCP7 530 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 USP17L20D6RJB6 530 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 GH2P01242 217 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 VCAM1P19320 739 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 USP17L24Q0WX57 530 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 TFCP2Q12800 502 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 MVPQ14764 893 aaKnown RBP11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 LRRC41Q15345 812 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 PRAMEF19Q5SWL8 479 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 ADGRA1Q86SQ6 560 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 METTL16Q86W50 562 aaKnown RBP11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 C12orf42Q96LP6 360 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 NECAB3Q96P71 396 aaPredicted RBP11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 FEZ1Q99689 392 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 DHX36Q9H2U1 1008 aaKnown RBP11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 COPRSQ9NQ92 184 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 THEGQ9P2T0 379 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 IVNS1ABPQ9Y6Y0 642 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 PARP14Q460N5 1801 aa11.44□□□□□ -0.58
SMARCD2-208ENST00000580054 CHD7Q9P2D1 2997 aa11.43□□□□□ -0.58
SMARCD2-208ENST00000580054 E9PSI1 815 aa11.43□□□□□ -0.58
SMARCD2-208ENST00000580054 SEPT4O43236 478 aa11.43□□□□□ -0.58
SMARCD2-208ENST00000580054 CLTBP09497 229 aa11.43□□□□□ -0.58
SMARCD2-208ENST00000580054 ADORA2AP29274 412 aa11.43□□□□□ -0.58
SMARCD2-208ENST00000580054 HOXD11P31277 338 aaPredicted RBP11.43□□□□□ -0.58
SMARCD2-208ENST00000580054 PBX2P40425 430 aa11.43□□□□□ -0.58
SMARCD2-208ENST00000580054 MCAMP43121 646 aa11.43□□□□□ -0.58
SMARCD2-208ENST00000580054 CATSPERGQ6ZRH7 1159 aa11.43□□□□□ -0.58
SMARCD2-208ENST00000580054 ACER1Q8TDN7 264 aa11.43□□□□□ -0.58
SMARCD2-208ENST00000580054 ATXN2LQ8WWM7 1075 aaKnown RBP11.43□□□□□ -0.58
SMARCD2-208ENST00000580054 TIFAQ96CG3 184 aa11.43□□□□□ -0.58
SMARCD2-208ENST00000580054 ASB2Q96Q27 587 aa11.43□□□□□ -0.58
SMARCD2-208ENST00000580054 UHRF1Q96T88 793 aaPredicted RBP11.43□□□□□ -0.58
SMARCD2-208ENST00000580054 TRIM34Q9BYJ4 488 aa11.43□□□□□ -0.58
SMARCD2-208ENST00000580054 PRDM12Q9H4Q4 367 aa11.43□□□□□ -0.58
SMARCD2-208ENST00000580054 COL11A1P12107 1806 aaPredicted RBP11.42□□□□□ -0.58
SMARCD2-208ENST00000580054 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.42□□□□□ -0.58
SMARCD2-208ENST00000580054 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.42□□□□□ -0.58
SMARCD2-208ENST00000580054 GRXCR1A8MXD5 290 aa11.42□□□□□ -0.58
SMARCD2-208ENST00000580054 KIAA0355O15063 1070 aa11.42□□□□□ -0.58
SMARCD2-208ENST00000580054 PQBP1O60828 265 aaKnown RBP11.42□□□□□ -0.58
SMARCD2-208ENST00000580054 COBLO75128 1261 aa11.42□□□□□ -0.58
SMARCD2-208ENST00000580054 FPGSQ05932 587 aa11.42□□□□□ -0.58
SMARCD2-208ENST00000580054 C1orf53Q5VUE5 145 aa11.42□□□□□ -0.58
SMARCD2-208ENST00000580054 OLFML2BQ68BL8 750 aa11.42□□□□□ -0.58
SMARCD2-208ENST00000580054 LBX2Q6XYB7 198 aa11.42□□□□□ -0.58
SMARCD2-208ENST00000580054 DPP9Q86TI2 863 aa11.42□□□□□ -0.58
SMARCD2-208ENST00000580054 FOXP4Q8IVH2 680 aaPredicted RBP11.42□□□□□ -0.58
SMARCD2-208ENST00000580054 NEUROD6Q96NK8 337 aa11.42□□□□□ -0.58
SMARCD2-208ENST00000580054 SMC4Q9NTJ3 1288 aa11.42□□□□□ -0.58
SMARCD2-208ENST00000580054 GINM1Q9NU53 330 aa11.42□□□□□ -0.58
SMARCD2-208ENST00000580054 NAV1Q8NEY1 1877 aa11.41□□□□□ -0.58
SMARCD2-208ENST00000580054 RAG1P15918 1043 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms