RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ATP1A3P13637 1013 aa11.56□□□□□ -0.56
VPS53-220ENST00000576149 KRT2P35908 639 aa11.56□□□□□ -0.56
VPS53-220ENST00000576149 DHX8Q14562 1220 aaKnown RBP11.56□□□□□ -0.56
VPS53-220ENST00000576149 NT5DC1Q5TFE4 455 aa11.56□□□□□ -0.56
VPS53-220ENST00000576149 TMTC3Q6ZXV5 915 aa11.56□□□□□ -0.56
VPS53-220ENST00000576149 TSC1Q92574 1164 aa11.56□□□□□ -0.56
VPS53-220ENST00000576149 NOL10Q9BSC4 688 aaKnown RBP11.56□□□□□ -0.56
VPS53-220ENST00000576149 ARPP21Q9UBL0 812 aaPredicted RBP11.56□□□□□ -0.56
VPS53-220ENST00000576149 BTAF1O14981 1849 aa11.56□□□□□ -0.56
VPS53-220ENST00000576149 DLEC1Q9Y238 1755 aa11.55□□□□□ -0.56
VPS53-220ENST00000576149 MYO1BO43795 1136 aa11.55□□□□□ -0.56
VPS53-220ENST00000576149 ATP2B1P20020 1258 aa11.55□□□□□ -0.56
VPS53-220ENST00000576149 BMP6P22004 513 aa11.55□□□□□ -0.56
VPS53-220ENST00000576149 POSTNQ15063 836 aa11.55□□□□□ -0.56
VPS53-220ENST00000576149 TMC6Q7Z403 805 aa11.55□□□□□ -0.56
VPS53-220ENST00000576149 CCDC150Q8NCX0 1101 aa11.55□□□□□ -0.56
VPS53-220ENST00000576149 SERTAD1Q9UHV2 236 aa11.55□□□□□ -0.56
VPS53-220ENST00000576149 hCG_1642624A0A1W2PR95 340 aa11.55□□□□□ -0.56
VPS53-220ENST00000576149 TRIM75PA6NK02 468 aa11.55□□□□□ -0.56
VPS53-220ENST00000576149 USP27XA6NNY8 438 aa11.55□□□□□ -0.56
VPS53-220ENST00000576149 CLSTN1O94985 981 aa11.55□□□□□ -0.56
VPS53-220ENST00000576149 SARSP49591 514 aaKnown RBP11.55□□□□□ -0.56
VPS53-220ENST00000576149 EARS2Q5JPH6 523 aaKnown RBP11.55□□□□□ -0.56
VPS53-220ENST00000576149 SPTY2D1Q68D10 685 aaPredicted RBP11.55□□□□□ -0.56
VPS53-220ENST00000576149 ARMCX5Q6P1M9 558 aa11.55□□□□□ -0.56
VPS53-220ENST00000576149 ZNF710Q8N1W2 664 aa11.55□□□□□ -0.56
VPS53-220ENST00000576149 PAXBP1Q9Y5B6 917 aa11.55□□□□□ -0.56
VPS53-220ENST00000576149 NHSQ6T4R5 1651 aa11.54□□□□□ -0.56
VPS53-220ENST00000576149 FAM205CA6NFA0 338 aa11.54□□□□□ -0.56
VPS53-220ENST00000576149 CTIFO43310 598 aaKnown RBP11.54□□□□□ -0.56
VPS53-220ENST00000576149 ACTN4O43707 911 aaKnown RBP11.54□□□□□ -0.56
VPS53-220ENST00000576149 CYP2D6P10635 497 aa11.54□□□□□ -0.56
VPS53-220ENST00000576149 FAM47AQ5JRC9 791 aa11.54□□□□□ -0.56
VPS53-220ENST00000576149 KANK3Q6NY19 840 aa11.54□□□□□ -0.56
VPS53-220ENST00000576149 NYAP1Q6ZVC0 841 aa11.54□□□□□ -0.56
VPS53-220ENST00000576149 CSRNP2Q9H175 543 aa11.54□□□□□ -0.56
VPS53-220ENST00000576149 MAN1B1Q9UKM7 699 aa11.54□□□□□ -0.56
VPS53-220ENST00000576149 CNTNAP5Q8WYK1 1306 aa11.54□□□□□ -0.56
VPS53-220ENST00000576149 MAST2Q6P0Q8 1798 aa11.54□□□□□ -0.56
VPS53-220ENST00000576149 MYH13Q9UKX3 1938 aa11.54□□□□□ -0.56
VPS53-220ENST00000576149 NMT2O60551 498 aa11.54□□□□□ -0.56
VPS53-220ENST00000576149 PDE4BQ07343 736 aa11.54□□□□□ -0.56
VPS53-220ENST00000576149 NPY5RQ15761 445 aa11.54□□□□□ -0.56
VPS53-220ENST00000576149 USP49Q70CQ1 688 aa11.54□□□□□ -0.56
VPS53-220ENST00000576149 CCAR2Q8N163 923 aaKnown RBP11.54□□□□□ -0.56
VPS53-220ENST00000576149 SRBD1Q8N5C6 995 aaKnown RBP11.54□□□□□ -0.56
VPS53-220ENST00000576149 CTCFLQ8NI51 663 aaPredicted RBP11.54□□□□□ -0.56
VPS53-220ENST00000576149 TNFRSF25Q93038 417 aa11.54□□□□□ -0.56
VPS53-220ENST00000576149 BRMS1Q9HCU9 246 aa11.54□□□□□ -0.56
VPS53-220ENST00000576149 MYH6P13533 1939 aa11.53□□□□□ -0.56
VPS53-220ENST00000576149 CBFA2T2O43439 604 aa11.53□□□□□ -0.56
VPS53-220ENST00000576149 BMP15O95972 392 aa11.53□□□□□ -0.56
VPS53-220ENST00000576149 PRR29P0C7W0 189 aa11.53□□□□□ -0.56
VPS53-220ENST00000576149 SFPQP23246 707 aaKnown RBP eCLIP11.53□□□□□ -0.56
VPS53-220ENST00000576149 UBASH3AP57075 661 aa11.53□□□□□ -0.56
VPS53-220ENST00000576149 CEP135Q66GS9 1140 aa11.53□□□□□ -0.56
VPS53-220ENST00000576149 DZIP1Q86YF9 867 aaKnown RBP11.53□□□□□ -0.56
VPS53-220ENST00000576149 TRIML1Q8N9V2 468 aa11.53□□□□□ -0.56
VPS53-220ENST00000576149 SMARCE1Q969G3 411 aa11.53□□□□□ -0.56
VPS53-220ENST00000576149 FANCLQ9NW38 375 aa11.53□□□□□ -0.56
VPS53-220ENST00000576149 JAG2Q9Y219 1238 aa11.53□□□□□ -0.56
VPS53-220ENST00000576149 LAMB1P07942 1786 aa11.53□□□□□ -0.56
VPS53-220ENST00000576149 KIAA1551Q9HCM1 1747 aa11.53□□□□□ -0.56
VPS53-220ENST00000576149 THSD7AQ9UPZ6 1657 aa11.53□□□□□ -0.56
VPS53-220ENST00000576149 SERPINC1P01008 464 aa11.52□□□□□ -0.56
VPS53-220ENST00000576149 RFC4P35249 363 aa11.52□□□□□ -0.56
VPS53-220ENST00000576149 GRAPQ13588 217 aa11.52□□□□□ -0.56
VPS53-220ENST00000576149 MORC3Q14149 939 aa11.52□□□□□ -0.56
VPS53-220ENST00000576149 PTPN14Q15678 1187 aa11.52□□□□□ -0.56
VPS53-220ENST00000576149 FAM182BQ5T319 152 aa11.52□□□□□ -0.56
VPS53-220ENST00000576149 RCSD1Q6JBY9 416 aa11.52□□□□□ -0.56
VPS53-220ENST00000576149 MLKLQ8NB16 471 aa11.52□□□□□ -0.56
VPS53-220ENST00000576149 SPATA20Q8TB22 786 aa11.52□□□□□ -0.56
VPS53-220ENST00000576149 GRAPLQ8TC17 118 aaPredicted RBP11.52□□□□□ -0.56
VPS53-220ENST00000576149 DPF2Q92785 391 aa11.52□□□□□ -0.56
VPS53-220ENST00000576149 MKRN1Q9UHC7 482 aaKnown RBP11.52□□□□□ -0.56
VPS53-220ENST00000576149 USP21Q9UK80 565 aa11.52□□□□□ -0.56
VPS53-220ENST00000576149 LEMD3Q9Y2U8 911 aa11.52□□□□□ -0.56
VPS53-220ENST00000576149 TNRC6CQ9HCJ0 1690 aaKnown RBP11.52□□□□□ -0.56
VPS53-220ENST00000576149 TSPY2A6NKD2 308 aa11.52□□□□□ -0.57
VPS53-220ENST00000576149 NPHP1O15259 732 aa11.52□□□□□ -0.57
VPS53-220ENST00000576149 KCNJ6P48051 423 aa11.52□□□□□ -0.57
VPS53-220ENST00000576149 NT5C2P49902 561 aa11.52□□□□□ -0.57
VPS53-220ENST00000576149 TRAPPC3LQ5T215 181 aa11.52□□□□□ -0.57
VPS53-220ENST00000576149 PDILTQ8N807 584 aa11.52□□□□□ -0.57
VPS53-220ENST00000576149 WDR66Q8TBY9 1149 aa11.52□□□□□ -0.57
VPS53-220ENST00000576149 FERMT2Q96AC1 680 aa11.52□□□□□ -0.57
VPS53-220ENST00000576149 MCM9Q9NXL9 1143 aa11.52□□□□□ -0.57
VPS53-220ENST00000576149 ANKIB1Q9P2G1 1089 aa11.52□□□□□ -0.57
VPS53-220ENST00000576149 DACH1Q9UI36 760 aa11.52□□□□□ -0.57
VPS53-220ENST00000576149 WNT7AO00755 349 aa11.51□□□□□ -0.57
VPS53-220ENST00000576149 LDHBP07195 334 aaKnown RBP11.51□□□□□ -0.57
VPS53-220ENST00000576149 USP17L8P0C7I0 530 aa11.51□□□□□ -0.57
VPS53-220ENST00000576149 SCG2P13521 617 aa11.51□□□□□ -0.57
VPS53-220ENST00000576149 C12orf60Q5U649 245 aa11.51□□□□□ -0.57
VPS53-220ENST00000576149 E4F1Q66K89 784 aaPredicted RBP11.51□□□□□ -0.57
VPS53-220ENST00000576149 GRAMD1CQ8IYS0 662 aa11.51□□□□□ -0.57
VPS53-220ENST00000576149 PRDM16Q9HAZ2 1276 aa11.51□□□□□ -0.57
VPS53-220ENST00000576149 TRMT1Q9NXH9 659 aaKnown RBP11.51□□□□□ -0.57
VPS53-220ENST00000576149 CCDC88AQ3V6T2 1871 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms