RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 GNAI1P63096 354 aa20.46■□□□□ 0.87
VPS53-218ENST00000575207 FAM47AQ5JRC9 791 aa20.46■□□□□ 0.87
VPS53-218ENST00000575207 STK31Q9BXU1 1019 aa20.46■□□□□ 0.87
VPS53-218ENST00000575207 RABGAP1Q9Y3P9 1069 aa20.46■□□□□ 0.87
VPS53-218ENST00000575207 FAM196BA6NMK8 535 aa20.45■□□□□ 0.86
VPS53-218ENST00000575207 CSF2RAP15509 400 aa20.45■□□□□ 0.86
VPS53-218ENST00000575207 ZEB1P37275 1124 aaPredicted RBP20.45■□□□□ 0.86
VPS53-218ENST00000575207 PPP2R2DQ66LE6 453 aa20.45■□□□□ 0.86
VPS53-218ENST00000575207 VGLL2Q8N8G2 317 aa20.45■□□□□ 0.86
VPS53-218ENST00000575207 GBF1Q92538 1859 aa20.45■□□□□ 0.86
VPS53-218ENST00000575207 ZFHX2Q9C0A1 2572 aaPredicted RBP20.44■□□□□ 0.86
VPS53-218ENST00000575207 PTPRZ1P23471 2315 aaPredicted RBP20.44■□□□□ 0.86
VPS53-218ENST00000575207 A0A1W2PQ45 241 aaPredicted RBP20.44■□□□□ 0.86
VPS53-218ENST00000575207 A0A1W2PQY0 241 aa20.44■□□□□ 0.86
VPS53-218ENST00000575207 C19orf81C9J6K1 198 aa20.44■□□□□ 0.86
VPS53-218ENST00000575207 CNMDO75829 334 aa20.44■□□□□ 0.86
VPS53-218ENST00000575207 PDE8BO95263 885 aa20.44■□□□□ 0.86
VPS53-218ENST00000575207 RRP1BQ14684 758 aaKnown RBP20.44■□□□□ 0.86
VPS53-218ENST00000575207 TSPYL6Q8N831 410 aa20.44■□□□□ 0.86
VPS53-218ENST00000575207 IVNS1ABPQ9Y6Y0 642 aa20.44■□□□□ 0.86
VPS53-218ENST00000575207 DCHS1Q96JQ0 3298 aa20.44■□□□□ 0.86
VPS53-218ENST00000575207 LDHBP07195 334 aaKnown RBP20.43■□□□□ 0.86
VPS53-218ENST00000575207 ACRP10323 421 aa20.43■□□□□ 0.86
VPS53-218ENST00000575207 FAM178BQ8IXR5 827 aa20.43■□□□□ 0.86
VPS53-218ENST00000575207 TMEM199Q8N511 208 aa20.43■□□□□ 0.86
VPS53-218ENST00000575207 RUNDC1Q96C34 613 aa20.43■□□□□ 0.86
VPS53-218ENST00000575207 GAKO14976 1311 aa20.43■□□□□ 0.86
VPS53-218ENST00000575207 WDR78Q5VTH9 848 aa20.42■□□□□ 0.86
VPS53-218ENST00000575207 MTIF3Q9H2K0 278 aaKnown RBP20.42■□□□□ 0.86
VPS53-218ENST00000575207 TRIOO75962 3097 aa20.42■□□□□ 0.86
VPS53-218ENST00000575207 ATAD5Q96QE3 1844 aa20.41■□□□□ 0.86
VPS53-218ENST00000575207 TRIM26Q12899 539 aaPredicted RBP20.41■□□□□ 0.86
VPS53-218ENST00000575207 PCDHA11Q9Y5I1 949 aa20.41■□□□□ 0.86
VPS53-218ENST00000575207 POTEB3A0JP26 581 aa20.4■□□□□ 0.86
VPS53-218ENST00000575207 RFXAPO00287 272 aa20.4■□□□□ 0.86
VPS53-218ENST00000575207 NPM3O75607 178 aaKnown RBP20.4■□□□□ 0.86
VPS53-218ENST00000575207 FLIIQ13045 1269 aa20.4■□□□□ 0.86
VPS53-218ENST00000575207 PICALMQ13492 652 aa20.4■□□□□ 0.86
VPS53-218ENST00000575207 METTL24Q5JXM2 366 aa20.4■□□□□ 0.86
VPS53-218ENST00000575207 POTEBQ6S5H4 581 aa20.4■□□□□ 0.86
VPS53-218ENST00000575207 RNF180Q86T96 592 aa20.4■□□□□ 0.86
VPS53-218ENST00000575207 XPNPEP3Q9NQH7 507 aa20.4■□□□□ 0.86
VPS53-218ENST00000575207 SALL1Q9NSC2 1324 aa20.39■□□□□ 0.85
VPS53-218ENST00000575207 USP17L10C9JJH3 530 aa20.39■□□□□ 0.85
VPS53-218ENST00000575207 FGFR2P21802 821 aa20.39■□□□□ 0.85
VPS53-218ENST00000575207 IL23AQ9NPF7 189 aa20.39■□□□□ 0.85
VPS53-218ENST00000575207 DCXO43602 365 aa20.38■□□□□ 0.85
VPS53-218ENST00000575207 IFIT1P09914 478 aaKnown RBP20.38■□□□□ 0.85
VPS53-218ENST00000575207 RABGGTBP53611 331 aa20.38■□□□□ 0.85
VPS53-218ENST00000575207 PRAMEF19Q5SWL8 479 aa20.38■□□□□ 0.85
VPS53-218ENST00000575207 KRT40Q6A162 431 aa20.38■□□□□ 0.85
VPS53-218ENST00000575207 ERMP1Q7Z2K6 904 aa20.38■□□□□ 0.85
VPS53-218ENST00000575207 DPP9Q86TI2 863 aa20.38■□□□□ 0.85
VPS53-218ENST00000575207 FGBP02675 491 aa20.37■□□□□ 0.85
VPS53-218ENST00000575207 MYOGP15173 224 aa20.37■□□□□ 0.85
VPS53-218ENST00000575207 FKBP5Q13451 457 aaPredicted RBP20.37■□□□□ 0.85
VPS53-218ENST00000575207 LRRC24Q50LG9 513 aa20.37■□□□□ 0.85
VPS53-218ENST00000575207 ANKS1AQ92625 1134 aa20.37■□□□□ 0.85
VPS53-218ENST00000575207 FAM163AQ96GL9 167 aaPredicted RBP20.37■□□□□ 0.85
VPS53-218ENST00000575207 STARD7Q9NQZ5 370 aa20.37■□□□□ 0.85
VPS53-218ENST00000575207 SMCHD1A6NHR9 2005 aa20.37■□□□□ 0.85
VPS53-218ENST00000575207 A0A0G2JMZ2 1700 aa20.36■□□□□ 0.85
VPS53-218ENST00000575207 MYH13Q9UKX3 1938 aa20.36■□□□□ 0.85
VPS53-218ENST00000575207 GRM8O00222 908 aa20.36■□□□□ 0.85
VPS53-218ENST00000575207 ASNSP08243 561 aa20.36■□□□□ 0.85
VPS53-218ENST00000575207 RARBP10826 455 aa20.36■□□□□ 0.85
VPS53-218ENST00000575207 CALD1Q05682 793 aaKnown RBP20.36■□□□□ 0.85
VPS53-218ENST00000575207 HFE2Q6ZVN8 426 aa20.36■□□□□ 0.85
VPS53-218ENST00000575207 MFSD14AQ96MC6 490 aa20.36■□□□□ 0.85
VPS53-218ENST00000575207 TSEN34Q9BSV6 310 aaKnown RBP20.36■□□□□ 0.85
VPS53-218ENST00000575207 EMILIN3Q9NT22 766 aa20.36■□□□□ 0.85
VPS53-218ENST00000575207 CACNA1HO95180 2353 aa20.36■□□□□ 0.85
VPS53-218ENST00000575207 EPG5Q9HCE0 2579 aa20.36■□□□□ 0.85
VPS53-218ENST00000575207 MYH2Q9UKX2 1941 aa20.35■□□□□ 0.85
VPS53-218ENST00000575207 STRNO43815 780 aa20.35■□□□□ 0.85
VPS53-218ENST00000575207 PGK1P00558 417 aa20.35■□□□□ 0.85
VPS53-218ENST00000575207 ADORA2AP29274 412 aa20.35■□□□□ 0.85
VPS53-218ENST00000575207 SSTR3P32745 418 aaPredicted RBP20.35■□□□□ 0.85
VPS53-218ENST00000575207 PUM3Q15397 648 aaKnown RBP20.35■□□□□ 0.85
VPS53-218ENST00000575207 BEND3Q5T5X7 828 aa20.35■□□□□ 0.85
VPS53-218ENST00000575207 LBX2Q6XYB7 198 aa20.35■□□□□ 0.85
VPS53-218ENST00000575207 PRSS33Q8NF86 280 aa20.35■□□□□ 0.85
VPS53-218ENST00000575207 ZNF236Q9UL36 1845 aa20.34■□□□□ 0.85
VPS53-218ENST00000575207 MROH7Q68CQ1 1323 aa20.34■□□□□ 0.85
VPS53-218ENST00000575207 EPOPA6NHQ4 379 aa20.34■□□□□ 0.85
VPS53-218ENST00000575207 GFRA3O60609 400 aa20.34■□□□□ 0.85
VPS53-218ENST00000575207 PTPN5P54829 565 aa20.34■□□□□ 0.85
VPS53-218ENST00000575207 NUP133Q8WUM0 1156 aa20.34■□□□□ 0.85
VPS53-218ENST00000575207 BTBD7Q9P203 1132 aa20.34■□□□□ 0.85
VPS53-218ENST00000575207 NRBP1Q9UHY1 535 aa20.34■□□□□ 0.85
VPS53-218ENST00000575207 HERC5Q9UII4 1024 aaKnown RBP20.34■□□□□ 0.85
VPS53-218ENST00000575207 APBB1O00213 710 aa20.33■□□□□ 0.85
VPS53-218ENST00000575207 CDK7P50613 346 aa20.33■□□□□ 0.85
VPS53-218ENST00000575207 PCGF6Q9BYE7 350 aa20.33■□□□□ 0.85
VPS53-218ENST00000575207 COBLO75128 1261 aa20.32■□□□□ 0.84
VPS53-218ENST00000575207 BTDP43251 543 aa20.32■□□□□ 0.84
VPS53-218ENST00000575207 ACLYP53396 1101 aa20.32■□□□□ 0.84
VPS53-218ENST00000575207 RHBDL3P58872 404 aa20.32■□□□□ 0.84
VPS53-218ENST00000575207 JAG1P78504 1218 aa20.32■□□□□ 0.84
VPS53-218ENST00000575207 NCBP3Q53F19 620 aaKnown RBP20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms