RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 PTPREP23469 700 aa9.78□□□□□ -0.84
VPS53-214ENST00000572607 LRRFIP1Q32MZ4 808 aaKnown RBP9.78□□□□□ -0.84
VPS53-214ENST00000572607 OTOP1Q7RTM1 612 aa9.78□□□□□ -0.84
VPS53-214ENST00000572607 ANKRD23Q86SG2 305 aa9.78□□□□□ -0.84
VPS53-214ENST00000572607 TTC6Q86TZ1 520 aa9.78□□□□□ -0.84
VPS53-214ENST00000572607 FAM43AQ8N2R8 423 aa9.78□□□□□ -0.84
VPS53-214ENST00000572607 DDRGK1Q96HY6 314 aa9.78□□□□□ -0.84
VPS53-214ENST00000572607 AS3MTQ9HBK9 375 aa9.78□□□□□ -0.84
VPS53-214ENST00000572607 SAP30BPQ9UHR5 308 aaKnown RBP9.78□□□□□ -0.84
VPS53-214ENST00000572607 PALD1Q9ULE6 856 aa9.78□□□□□ -0.84
VPS53-214ENST00000572607 CEP290O15078 2479 aa9.77□□□□□ -0.85
VPS53-214ENST00000572607 BTBD19C9JJ37 291 aa9.77□□□□□ -0.85
VPS53-214ENST00000572607 ERC2O15083 957 aa9.77□□□□□ -0.85
VPS53-214ENST00000572607 POLR3DP05423 398 aaPredicted RBP9.77□□□□□ -0.85
VPS53-214ENST00000572607 CAP2P40123 477 aa9.77□□□□□ -0.85
VPS53-214ENST00000572607 SP3Q02447 781 aa9.77□□□□□ -0.85
VPS53-214ENST00000572607 KIF22Q14807 665 aa9.77□□□□□ -0.85
VPS53-214ENST00000572607 GADL1Q6ZQY3 521 aa9.77□□□□□ -0.85
VPS53-214ENST00000572607 AMOTL1Q8IY63 956 aa9.77□□□□□ -0.85
VPS53-214ENST00000572607 GCC1Q96CN9 775 aa9.77□□□□□ -0.85
VPS53-214ENST00000572607 EDC3Q96F86 508 aaKnown RBP9.77□□□□□ -0.85
VPS53-214ENST00000572607 PARK7Q99497 189 aaKnown RBP9.77□□□□□ -0.85
VPS53-214ENST00000572607 LARP6Q9BRS8 491 aaKnown RBP9.77□□□□□ -0.85
VPS53-214ENST00000572607 GINM1Q9NU53 330 aa9.77□□□□□ -0.85
VPS53-214ENST00000572607 AK9Q5TCS8 1911 aa9.77□□□□□ -0.85
VPS53-214ENST00000572607 TTC41PQ6P2S7 1318 aa9.77□□□□□ -0.85
VPS53-214ENST00000572607 TRIOBPQ9H2D6 2365 aa9.77□□□□□ -0.85
VPS53-214ENST00000572607 A0A0G2JLL6 359 aaPredicted RBP9.76□□□□□ -0.85
VPS53-214ENST00000572607 TRIM75PA6NK02 468 aa9.76□□□□□ -0.85
VPS53-214ENST00000572607 USP17L5A8MUK1 530 aa9.76□□□□□ -0.85
VPS53-214ENST00000572607 PDHXO00330 501 aa9.76□□□□□ -0.85
VPS53-214ENST00000572607 TLR2O60603 784 aa9.76□□□□□ -0.85
VPS53-214ENST00000572607 ASNSP08243 561 aa9.76□□□□□ -0.85
VPS53-214ENST00000572607 SLURP2P0DP57 97 aa9.76□□□□□ -0.85
VPS53-214ENST00000572607 ADD2P35612 726 aa9.76□□□□□ -0.85
VPS53-214ENST00000572607 MFSD10Q14728 455 aa9.76□□□□□ -0.85
VPS53-214ENST00000572607 UBE3CQ15386 1083 aa9.76□□□□□ -0.85
VPS53-214ENST00000572607 SLC4A8Q2Y0W8 1093 aa9.76□□□□□ -0.85
VPS53-214ENST00000572607 PRRT2Q7Z6L0 340 aaPredicted RBP9.76□□□□□ -0.85
VPS53-214ENST00000572607 ZNF280CQ8ND82 737 aa9.76□□□□□ -0.85
VPS53-214ENST00000572607 CD99L2Q8TCZ2 262 aa9.76□□□□□ -0.85
VPS53-214ENST00000572607 ARMC5Q96C12 935 aa9.76□□□□□ -0.85
VPS53-214ENST00000572607 DDX27Q96GQ7 796 aaKnown RBP9.76□□□□□ -0.85
VPS53-214ENST00000572607 RIOK1Q9BRS2 568 aaKnown RBP9.76□□□□□ -0.85
VPS53-214ENST00000572607 EHD4Q9H223 541 aa9.76□□□□□ -0.85
VPS53-214ENST00000572607 EFCC1Q9HA90 598 aa9.76□□□□□ -0.85
VPS53-214ENST00000572607 AFG3L2Q9Y4W6 797 aa9.76□□□□□ -0.85
VPS53-214ENST00000572607 TRIM17Q9Y577 477 aa9.76□□□□□ -0.85
VPS53-214ENST00000572607 MBD4O95243 580 aa9.75□□□□□ -0.85
VPS53-214ENST00000572607 EN2P19622 333 aaPredicted RBP9.75□□□□□ -0.85
VPS53-214ENST00000572607 PABPC4Q13310 644 aaKnown RBP eCLIP9.75□□□□□ -0.85
VPS53-214ENST00000572607 HDAC1Q13547 482 aaPredicted RBP9.75□□□□□ -0.85
VPS53-214ENST00000572607 ANKRD45Q5TZF3 282 aa9.75□□□□□ -0.85
VPS53-214ENST00000572607 LCORLQ8N3X6 602 aa9.75□□□□□ -0.85
VPS53-214ENST00000572607 ZDHHC16Q969W1 377 aa9.75□□□□□ -0.85
VPS53-214ENST00000572607 ZBED2Q9BTP6 218 aa9.75□□□□□ -0.85
VPS53-214ENST00000572607 RWDD1Q9H446 243 aaPredicted RBP9.75□□□□□ -0.85
VPS53-214ENST00000572607 ARMT1Q9H993 441 aa9.75□□□□□ -0.85
VPS53-214ENST00000572607 MCM9Q9NXL9 1143 aa9.75□□□□□ -0.85
VPS53-214ENST00000572607 TMOD4Q9NZQ9 345 aa9.75□□□□□ -0.85
VPS53-214ENST00000572607 SERPINB13Q9UIV8 391 aa9.75□□□□□ -0.85
VPS53-214ENST00000572607 PNMA3Q9UL41 463 aa9.75□□□□□ -0.85
VPS53-214ENST00000572607 PTPN22Q9Y2R2 807 aa9.75□□□□□ -0.85
VPS53-214ENST00000572607 COL6A3P12111 3177 aa9.74□□□□□ -0.85
VPS53-214ENST00000572607 TCRBV5S4A2TA0A5A2 114 aa9.74□□□□□ -0.85
VPS53-214ENST00000572607 GLRX3O76003 335 aaKnown RBP9.74□□□□□ -0.85
VPS53-214ENST00000572607 GDF11O95390 407 aa9.74□□□□□ -0.85
VPS53-214ENST00000572607 ZFYP08048 801 aaPredicted RBP9.74□□□□□ -0.85
VPS53-214ENST00000572607 MX1P20591 662 aa9.74□□□□□ -0.85
VPS53-214ENST00000572607 SPP2Q13103 211 aa9.74□□□□□ -0.85
VPS53-214ENST00000572607 TSHZ3Q63HK5 1081 aa9.74□□□□□ -0.85
VPS53-214ENST00000572607 CCDC84Q86UT8 332 aaPredicted RBP9.74□□□□□ -0.85
VPS53-214ENST00000572607 METTL16Q86W50 562 aaKnown RBP9.74□□□□□ -0.85
VPS53-214ENST00000572607 KBTBD3Q8NAB2 608 aa9.74□□□□□ -0.85
VPS53-214ENST00000572607 SMCR8Q8TEV9 937 aaPredicted RBP9.74□□□□□ -0.85
VPS53-214ENST00000572607 SDR42E1Q8WUS8 393 aa9.74□□□□□ -0.85
VPS53-214ENST00000572607 CABP5Q9NP86 173 aa9.74□□□□□ -0.85
VPS53-214ENST00000572607 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.74□□□□□ -0.85
VPS53-214ENST00000572607 ZBTB21Q9ULJ3 1066 aa9.74□□□□□ -0.85
VPS53-214ENST00000572607 AGTPBP1Q9UPW5 1226 aa9.74□□□□□ -0.85
VPS53-214ENST00000572607 SLC45A1Q9Y2W3 748 aa9.74□□□□□ -0.85
VPS53-214ENST00000572607 OSBPP22059 807 aa9.73□□□□□ -0.85
VPS53-214ENST00000572607 CERKLQ49MI3 558 aaPredicted RBP9.73□□□□□ -0.85
VPS53-214ENST00000572607 PROCA1Q8NCQ7 364 aaPredicted RBP9.73□□□□□ -0.85
VPS53-214ENST00000572607 FEZ1Q99689 392 aa9.73□□□□□ -0.85
VPS53-214ENST00000572607 FSD1Q9BTV5 496 aa9.73□□□□□ -0.85
VPS53-214ENST00000572607 WDR18Q9BV38 432 aa9.73□□□□□ -0.85
VPS53-214ENST00000572607 DNAJC18Q9H819 358 aa9.73□□□□□ -0.85
VPS53-214ENST00000572607 DCP1AQ9NPI6 582 aaPredicted RBP9.73□□□□□ -0.85
VPS53-214ENST00000572607 ATP8A2Q9NTI2 1148 aa9.73□□□□□ -0.85
VPS53-214ENST00000572607 SWAP70Q9UH65 585 aa9.73□□□□□ -0.85
VPS53-214ENST00000572607 CPA4Q9UI42 421 aa9.73□□□□□ -0.85
VPS53-214ENST00000572607 SUPT16HQ9Y5B9 1047 aaKnown RBP9.73□□□□□ -0.85
VPS53-214ENST00000572607 SLC4A4Q9Y6R1 1079 aa9.73□□□□□ -0.85
VPS53-214ENST00000572607 DOCK1Q14185 1865 aa9.72□□□□□ -0.85
VPS53-214ENST00000572607 C19orf81C9J6K1 198 aa9.72□□□□□ -0.85
VPS53-214ENST00000572607 USP17L10C9JJH3 530 aa9.72□□□□□ -0.85
VPS53-214ENST00000572607 MPHOSPH10O00566 681 aaKnown RBP9.72□□□□□ -0.85
VPS53-214ENST00000572607 RNF113AO15541 343 aaKnown RBP9.72□□□□□ -0.85
VPS53-214ENST00000572607 FMNL1O95466 1100 aaPredicted RBP9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms