RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 HABP4Q5JVS0 413 aaKnown RBP21.93■■□□□ 1.1
CHD3-214ENST00000572579 SIAH1Q8IUQ4 282 aa21.93■■□□□ 1.1
CHD3-214ENST00000572579 LRRCC1Q9C099 1032 aa21.93■■□□□ 1.1
CHD3-214ENST00000572579 KIAA1683Q9H0B3 1180 aa21.93■■□□□ 1.1
CHD3-214ENST00000572579 CHMP4BQ9H444 224 aaKnown RBP21.93■■□□□ 1.1
CHD3-214ENST00000572579 CYP2D7A0A087X1C5 515 aa21.92■■□□□ 1.1
CHD3-214ENST00000572579 MBD4O95243 580 aa21.92■■□□□ 1.1
CHD3-214ENST00000572579 KIAA1755Q5JYT7 1200 aa21.92■■□□□ 1.1
CHD3-214ENST00000572579 USP6NLQ92738 828 aa21.92■■□□□ 1.1
CHD3-214ENST00000572579 DEFB118Q96PH6 123 aa21.92■■□□□ 1.1
CHD3-214ENST00000572579 CRISPLD2Q9H0B8 497 aa21.92■■□□□ 1.1
CHD3-214ENST00000572579 DCTPP1Q9H773 170 aa21.92■■□□□ 1.1
CHD3-214ENST00000572579 RANBP2P49792 3224 aaKnown RBP21.92■■□□□ 1.1
CHD3-214ENST00000572579 VCAM1P19320 739 aa21.91■■□□□ 1.1
CHD3-214ENST00000572579 ERVK-9P63128 1117 aa21.91■■□□□ 1.1
CHD3-214ENST00000572579 ERVK-24P63145 666 aa21.91■■□□□ 1.1
CHD3-214ENST00000572579 CATSPERGQ6ZRH7 1159 aa21.91■■□□□ 1.1
CHD3-214ENST00000572579 TRIB2Q92519 343 aa21.91■■□□□ 1.1
CHD3-214ENST00000572579 PCDHB15Q9Y5E8 787 aa21.91■■□□□ 1.1
CHD3-214ENST00000572579 CEP290O15078 2479 aa21.9■■□□□ 1.1
CHD3-214ENST00000572579 DDX60LQ5H9U9 1706 aaKnown RBP21.9■■□□□ 1.1
CHD3-214ENST00000572579 CYP2B6P20813 491 aa21.9■■□□□ 1.1
CHD3-214ENST00000572579 UBE3CQ15386 1083 aa21.9■■□□□ 1.1
CHD3-214ENST00000572579 TSHZ3Q63HK5 1081 aa21.9■■□□□ 1.1
CHD3-214ENST00000572579 PUS7LQ9H0K6 701 aaKnown RBP21.9■■□□□ 1.1
CHD3-214ENST00000572579 COLQQ9Y215 455 aaPredicted RBP21.9■■□□□ 1.1
CHD3-214ENST00000572579 MYH1P12882 1939 aa21.9■■□□□ 1.1
CHD3-214ENST00000572579 USP17L15C9J2P7 530 aa21.89■■□□□ 1.09
CHD3-214ENST00000572579 USP17L13C9JLJ4 530 aa21.89■■□□□ 1.09
CHD3-214ENST00000572579 USP17L11C9JVI0 530 aa21.89■■□□□ 1.09
CHD3-214ENST00000572579 USP17L18D6R9N7 530 aa21.89■■□□□ 1.09
CHD3-214ENST00000572579 USP17L22D6RA61 530 aa21.89■■□□□ 1.09
CHD3-214ENST00000572579 USP17L17D6RBQ6 530 aa21.89■■□□□ 1.09
CHD3-214ENST00000572579 USP17L19D6RCP7 530 aa21.89■■□□□ 1.09
CHD3-214ENST00000572579 USP17L20D6RJB6 530 aa21.89■■□□□ 1.09
CHD3-214ENST00000572579 USP17L24Q0WX57 530 aa21.89■■□□□ 1.09
CHD3-214ENST00000572579 MORN1Q5T089 497 aa21.89■■□□□ 1.09
CHD3-214ENST00000572579 FEZ1Q99689 392 aa21.89■■□□□ 1.09
CHD3-214ENST00000572579 PAGR1Q9BTK6 254 aa21.89■■□□□ 1.09
CHD3-214ENST00000572579 BTBD7Q9P203 1132 aa21.89■■□□□ 1.09
CHD3-214ENST00000572579 FARP2O94887 1054 aaPredicted RBP21.88■■□□□ 1.09
CHD3-214ENST00000572579 TFRCP02786 760 aaKnown RBP21.88■■□□□ 1.09
CHD3-214ENST00000572579 HMGCRP04035 888 aa21.88■■□□□ 1.09
CHD3-214ENST00000572579 MNX1P50219 401 aaPredicted RBP21.88■■□□□ 1.09
CHD3-214ENST00000572579 MAP3K21Q5TCX8 1036 aa21.88■■□□□ 1.09
CHD3-214ENST00000572579 GPR142Q7Z601 462 aa21.88■■□□□ 1.09
CHD3-214ENST00000572579 CLEC10AQ8IUN9 316 aa21.88■■□□□ 1.09
CHD3-214ENST00000572579 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.88■■□□□ 1.09
CHD3-214ENST00000572579 CABP5Q9NP86 173 aa21.88■■□□□ 1.09
CHD3-214ENST00000572579 USP17L12C9JPN9 530 aa21.87■■□□□ 1.09
CHD3-214ENST00000572579 USP17L21D6R901 530 aa21.87■■□□□ 1.09
CHD3-214ENST00000572579 AKR1B1P15121 316 aa21.87■■□□□ 1.09
CHD3-214ENST00000572579 CCL14Q16627 93 aa21.87■■□□□ 1.09
CHD3-214ENST00000572579 C12orf60Q5U649 245 aa21.87■■□□□ 1.09
CHD3-214ENST00000572579 DIS3LQ8TF46 1054 aaKnown RBP21.87■■□□□ 1.09
CHD3-214ENST00000572579 RPAP3Q9H6T3 665 aaPredicted RBP21.87■■□□□ 1.09
CHD3-214ENST00000572579 ATP8A2Q9NTI2 1148 aa21.87■■□□□ 1.09
CHD3-214ENST00000572579 ECHDC1Q9NTX5 307 aa21.87■■□□□ 1.09
CHD3-214ENST00000572579 RABGAP1Q9Y3P9 1069 aa21.87■■□□□ 1.09
CHD3-214ENST00000572579 PLXNB2O15031 1838 aa21.86■■□□□ 1.09
CHD3-214ENST00000572579 SPDYE16A6NNV3 312 aaPredicted RBP21.86■■□□□ 1.09
CHD3-214ENST00000572579 USP14P54578 494 aa21.86■■□□□ 1.09
CHD3-214ENST00000572579 LBX2Q6XYB7 198 aa21.86■■□□□ 1.09
CHD3-214ENST00000572579 DPF3Q92784 378 aa21.86■■□□□ 1.09
CHD3-214ENST00000572579 GCC1Q96CN9 775 aa21.86■■□□□ 1.09
CHD3-214ENST00000572579 MPHOSPH10O00566 681 aaKnown RBP21.85■■□□□ 1.09
CHD3-214ENST00000572579 XRCC5P13010 732 aaKnown RBP21.85■■□□□ 1.09
CHD3-214ENST00000572579 MAPK4P31152 587 aa21.85■■□□□ 1.09
CHD3-214ENST00000572579 CDK8P49336 464 aa21.85■■□□□ 1.09
CHD3-214ENST00000572579 CTR9Q6PD62 1173 aa21.85■■□□□ 1.09
CHD3-214ENST00000572579 STRBPQ96SI9 672 aaKnown RBP21.85■■□□□ 1.09
CHD3-214ENST00000572579 NUDT12Q9BQG2 462 aa21.85■■□□□ 1.09
CHD3-214ENST00000572579 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.85■■□□□ 1.09
CHD3-214ENST00000572579 RPTORQ8N122 1335 aa21.84■■□□□ 1.09
CHD3-214ENST00000572579 PLEKHH3Q7Z736 793 aa21.84■■□□□ 1.09
CHD3-214ENST00000572579 OTUD7AQ8TE49 926 aaPredicted RBP21.84■■□□□ 1.09
CHD3-214ENST00000572579 GTF3C2Q8WUA4 911 aaPredicted RBP21.84■■□□□ 1.09
CHD3-214ENST00000572579 OSBP2Q969R2 916 aa21.84■■□□□ 1.09
CHD3-214ENST00000572579 PAWRQ96IZ0 340 aaKnown RBP21.84■■□□□ 1.09
CHD3-214ENST00000572579 SLC4A4Q9Y6R1 1079 aa21.84■■□□□ 1.09
CHD3-214ENST00000572579 TMEM179Q6ZVK1 233 aa21.83■■□□□ 1.09
CHD3-214ENST00000572579 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.83■■□□□ 1.09
CHD3-214ENST00000572579 FLRT1Q9NZU1 646 aa21.83■■□□□ 1.09
CHD3-214ENST00000572579 SWAP70Q9UH65 585 aa21.83■■□□□ 1.09
CHD3-214ENST00000572579 SZT2Q5T011 3432 aa21.82■■□□□ 1.08
CHD3-214ENST00000572579 GSG1L2A8MUP6 293 aa21.82■■□□□ 1.08
CHD3-214ENST00000572579 PRKAR2AP13861 404 aaKnown RBP21.82■■□□□ 1.08
CHD3-214ENST00000572579 FXR1P51114 621 aaKnown RBP eCLIP21.82■■□□□ 1.08
CHD3-214ENST00000572579 CACNB2Q08289 660 aaPredicted RBP21.82■■□□□ 1.08
CHD3-214ENST00000572579 C16orf86Q6ZW13 317 aa21.82■■□□□ 1.08
CHD3-214ENST00000572579 SOCS4Q8WXH5 440 aa21.82■■□□□ 1.08
CHD3-214ENST00000572579 HMX1Q9NP08 348 aaPredicted RBP21.82■■□□□ 1.08
CHD3-214ENST00000572579 IGHA2P01877 340 aa21.81■■□□□ 1.08
CHD3-214ENST00000572579 KBTBD3Q8NAB2 608 aa21.81■■□□□ 1.08
CHD3-214ENST00000572579 PRO3102Q9H379 93 aa21.81■■□□□ 1.08
CHD3-214ENST00000572579 TMX2Q9Y320 296 aa21.81■■□□□ 1.08
CHD3-214ENST00000572579 CCND3P30281 292 aaPredicted RBP21.8■■□□□ 1.08
CHD3-214ENST00000572579 MAP2K5Q13163 448 aa21.8■■□□□ 1.08
CHD3-214ENST00000572579 COG2Q14746 738 aa21.8■■□□□ 1.08
CHD3-214ENST00000572579 LHX8Q68G74 356 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms