RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 ANTXR2P58335 489 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 CTDSPL2Q05D32 466 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 STK3Q13188 491 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 RRP12Q5JTH9 1297 aaKnown RBP9.29□□□□□ -0.92
VPS39-213ENST00000570062 DACT2Q5SW24 774 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 IFIT1BQ5T764 474 aaKnown RBP9.29□□□□□ -0.92
VPS39-213ENST00000570062 APOA5Q6Q788 366 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 PACS2Q86VP3 889 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 SH3RF3Q8TEJ3 882 aaPredicted RBP9.29□□□□□ -0.92
VPS39-213ENST00000570062 TGFBRAP1Q8WUH2 860 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 ANKS1AQ92625 1134 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 LRCH3Q96II8 777 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 TCEANC2Q96MN5 208 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 LY9Q9HBG7 655 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 CFAP45Q9UL16 551 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 ISY1Q9ULR0 285 aaKnown RBP9.29□□□□□ -0.92
VPS39-213ENST00000570062 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.29□□□□□ -0.92
VPS39-213ENST00000570062 A0A1B0GUL6 1792 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 PTPDC1A2A3K4 754 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 TRAK2O60296 914 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 LARGE1O95461 756 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 KCNA3P22001 575 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 KIF5BP33176 963 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 IARSP41252 1262 aaKnown RBP9.28□□□□□ -0.92
VPS39-213ENST00000570062 CRKP46108 304 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 RHBDL3P58872 404 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 AKAP17AQ02040 695 aaKnown RBP9.28□□□□□ -0.92
VPS39-213ENST00000570062 TRIM29Q14134 588 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 TNIP1Q15025 636 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 TSR1Q2NL82 804 aaKnown RBP9.28□□□□□ -0.92
VPS39-213ENST00000570062 CYB5R4Q7L1T6 521 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 FOXP4Q8IVH2 680 aaPredicted RBP9.28□□□□□ -0.92
VPS39-213ENST00000570062 NIM1KQ8IY84 436 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 LARGE2Q8N3Y3 721 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 NSUN7Q8NE18 718 aaKnown RBP9.28□□□□□ -0.92
VPS39-213ENST00000570062 AGBL3Q8NEM8 1001 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 JDP2Q8WYK2 163 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 CCDC17Q96LX7 622 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 GPR101Q96P66 508 aaPredicted RBP9.28□□□□□ -0.92
VPS39-213ENST00000570062 LZTS2Q9BRK4 669 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 IDI2Q9BXS1 227 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 LRRC2Q9BYS8 371 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 SCAND2PQ9GZW5 306 aaPredicted RBP9.28□□□□□ -0.92
VPS39-213ENST00000570062 USP40Q9NVE5 1235 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 TMOD2Q9NZR1 351 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 ZNRF3Q9ULT6 936 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 HPS5Q9UPZ3 1129 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 MTMR6Q9Y217 621 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 DAGLAQ9Y4D2 1042 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 NEDD4P46934 1319 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 STK36Q9NRP7 1315 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 LTBP3Q9NS15 1303 aa9.28□□□□□ -0.92
VPS39-213ENST00000570062 A0A0G2JLW4 131 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 GOLGA8AA7E2F4 631 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 ENTPD3O75355 529 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 ZBTB7AO95365 584 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 VIL1P09327 827 aaKnown RBP9.27□□□□□ -0.93
VPS39-213ENST00000570062 IFNAR1P17181 557 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 RPS12P25398 132 aaKnown RBP9.27□□□□□ -0.93
VPS39-213ENST00000570062 CCT2P78371 535 aaKnown RBP9.27□□□□□ -0.93
VPS39-213ENST00000570062 KRT85P78386 507 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 SSRP1Q08945 709 aaKnown RBP9.27□□□□□ -0.93
VPS39-213ENST00000570062 DIXDC1Q155Q3 683 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 RTN1Q16799 776 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 AOC3Q16853 763 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 FKBP1CQ5VVH2 108 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 RSBN1LQ6PCB5 846 aaPredicted RBP9.27□□□□□ -0.93
VPS39-213ENST00000570062 C16orf86Q6ZW13 317 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 CHST3Q7LGC8 479 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 FANCBQ8NB91 859 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 CTCFLQ8NI51 663 aaPredicted RBP9.27□□□□□ -0.93
VPS39-213ENST00000570062 SYAP1Q96A49 352 aaPredicted RBP9.27□□□□□ -0.93
VPS39-213ENST00000570062 EHD4Q9H223 541 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 TAOK3Q9H2K8 898 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 DBNDD1Q9H9R9 158 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 ORC3Q9UBD5 711 aaPredicted RBP9.27□□□□□ -0.93
VPS39-213ENST00000570062 TSKSQ9UJT2 592 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 JAG2Q9Y219 1238 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 ZDHHC9Q9Y397 364 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 TNKSO95271 1327 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 FLT1P17948 1338 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 MYH7P12883 1935 aa9.27□□□□□ -0.93
VPS39-213ENST00000570062 CACNA1SQ13698 1873 aa9.26□□□□□ -0.93
VPS39-213ENST00000570062 ANKRD31Q8N7Z5 1873 aa9.26□□□□□ -0.93
VPS39-213ENST00000570062 LTBP1Q14766 1721 aa9.26□□□□□ -0.93
VPS39-213ENST00000570062 VPS37CA5D8V6 355 aaPredicted RBP9.26□□□□□ -0.93
VPS39-213ENST00000570062 MYO1BO43795 1136 aa9.26□□□□□ -0.93
VPS39-213ENST00000570062 TSPY3P0CV98 308 aa9.26□□□□□ -0.93
VPS39-213ENST00000570062 TSPY8P0CW00 308 aa9.26□□□□□ -0.93
VPS39-213ENST00000570062 SMARCA1P28370 1054 aa9.26□□□□□ -0.93
VPS39-213ENST00000570062 TFAP4Q01664 338 aa9.26□□□□□ -0.93
VPS39-213ENST00000570062 SAFBQ15424 915 aaKnown RBP eCLIP9.26□□□□□ -0.93
VPS39-213ENST00000570062 SEC23AQ15436 765 aa9.26□□□□□ -0.93
VPS39-213ENST00000570062 KLHL40Q2TBA0 621 aa9.26□□□□□ -0.93
VPS39-213ENST00000570062 MCTP1Q6DN14 999 aa9.26□□□□□ -0.93
VPS39-213ENST00000570062 BRAPQ7Z569 592 aa9.26□□□□□ -0.93
VPS39-213ENST00000570062 ZNF654Q8IZM8 581 aa9.26□□□□□ -0.93
VPS39-213ENST00000570062 TMEM87AQ8NBN3 555 aa9.26□□□□□ -0.93
VPS39-213ENST00000570062 MTMR14Q8NCE2 650 aa9.26□□□□□ -0.93
VPS39-213ENST00000570062 NEDD1Q8NHV4 660 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms