RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 TFAP4Q01664 338 aa9.98□□□□□ -0.81
SF3B3-212ENST00000568539 PRKG1Q13976 671 aa9.98□□□□□ -0.81
SF3B3-212ENST00000568539 MAP3K11Q16584 847 aa9.98□□□□□ -0.81
SF3B3-212ENST00000568539 SHROOM1Q2M3G4 852 aaPredicted RBP9.98□□□□□ -0.81
SF3B3-212ENST00000568539 FAM47AQ5JRC9 791 aa9.98□□□□□ -0.81
SF3B3-212ENST00000568539 CYB5R4Q7L1T6 521 aa9.98□□□□□ -0.81
SF3B3-212ENST00000568539 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.98□□□□□ -0.81
SF3B3-212ENST00000568539 NEDD1Q8NHV4 660 aa9.98□□□□□ -0.81
SF3B3-212ENST00000568539 WRNIP1Q96S55 665 aa9.98□□□□□ -0.81
SF3B3-212ENST00000568539 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.98□□□□□ -0.81
SF3B3-212ENST00000568539 ZNF408Q9H9D4 720 aa9.98□□□□□ -0.81
SF3B3-212ENST00000568539 ZSWIM6Q9HCJ5 1215 aa9.98□□□□□ -0.81
SF3B3-212ENST00000568539 ZSWIM5Q9P217 1185 aa9.98□□□□□ -0.81
SF3B3-212ENST00000568539 PLIN4Q96Q06 1357 aa9.98□□□□□ -0.81
SF3B3-212ENST00000568539 LAMB1P07942 1786 aa9.98□□□□□ -0.81
SF3B3-212ENST00000568539 IGKV6D-41A0A0C4DH26 115 aa9.97□□□□□ -0.81
SF3B3-212ENST00000568539 CTNND1O60716 968 aaKnown RBP9.97□□□□□ -0.81
SF3B3-212ENST00000568539 CELF2O95319 508 aaKnown RBP9.97□□□□□ -0.81
SF3B3-212ENST00000568539 GDF11O95390 407 aa9.97□□□□□ -0.81
SF3B3-212ENST00000568539 TSPY3P0CV98 308 aa9.97□□□□□ -0.81
SF3B3-212ENST00000568539 TSPY8P0CW00 308 aa9.97□□□□□ -0.81
SF3B3-212ENST00000568539 CPA1P15085 419 aa9.97□□□□□ -0.81
SF3B3-212ENST00000568539 CASTP20810 708 aaKnown RBP9.97□□□□□ -0.81
SF3B3-212ENST00000568539 INPP5BP32019 993 aa9.97□□□□□ -0.81
SF3B3-212ENST00000568539 GUCY1A2P33402 732 aa9.97□□□□□ -0.81
SF3B3-212ENST00000568539 IREB2P48200 963 aaKnown RBP9.97□□□□□ -0.81
SF3B3-212ENST00000568539 ANTXR2P58335 489 aa9.97□□□□□ -0.81
SF3B3-212ENST00000568539 FKBP1BP68106 108 aa9.97□□□□□ -0.81
SF3B3-212ENST00000568539 EXOSC10Q01780 885 aaKnown RBP9.97□□□□□ -0.81
SF3B3-212ENST00000568539 FSTL1Q12841 308 aa9.97□□□□□ -0.81
SF3B3-212ENST00000568539 ABCB5Q2M3G0 1257 aa9.97□□□□□ -0.81
SF3B3-212ENST00000568539 CST9Q5W186 159 aa9.97□□□□□ -0.81
SF3B3-212ENST00000568539 BLOC1S2Q6QNY1 142 aa9.97□□□□□ -0.81
SF3B3-212ENST00000568539 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.97□□□□□ -0.81
SF3B3-212ENST00000568539 MOB2Q70IA6 237 aa9.97□□□□□ -0.81
SF3B3-212ENST00000568539 RUFY3Q7L099 469 aa9.97□□□□□ -0.81
SF3B3-212ENST00000568539 DHX32Q7L7V1 743 aaKnown RBP9.97□□□□□ -0.81
SF3B3-212ENST00000568539 UPF3BQ9BZI7 483 aaKnown RBP9.97□□□□□ -0.81
SF3B3-212ENST00000568539 IL17RBQ9NRM6 502 aa9.97□□□□□ -0.81
SF3B3-212ENST00000568539 TCP11L1Q9NUJ3 509 aa9.97□□□□□ -0.81
SF3B3-212ENST00000568539 ANGEL1Q9UNK9 670 aaKnown RBP9.97□□□□□ -0.81
SF3B3-212ENST00000568539 LAMA4Q16363 1823 aa9.97□□□□□ -0.81
SF3B3-212ENST00000568539 WDR19Q8NEZ3 1342 aa9.97□□□□□ -0.81
SF3B3-212ENST00000568539 TNRC18O15417 2968 aaPredicted RBP9.97□□□□□ -0.81
SF3B3-212ENST00000568539 MPHOSPH10O00566 681 aaKnown RBP9.96□□□□□ -0.82
SF3B3-212ENST00000568539 PRC1O43663 620 aa9.96□□□□□ -0.82
SF3B3-212ENST00000568539 NMT2O60551 498 aa9.96□□□□□ -0.82
SF3B3-212ENST00000568539 GH2P01242 217 aa9.96□□□□□ -0.82
SF3B3-212ENST00000568539 RPS6KB1P23443 525 aa9.96□□□□□ -0.82
SF3B3-212ENST00000568539 MCM5P33992 734 aa9.96□□□□□ -0.82
SF3B3-212ENST00000568539 NOVP48745 357 aa9.96□□□□□ -0.82
SF3B3-212ENST00000568539 MAP3K9P80192 1104 aa9.96□□□□□ -0.82
SF3B3-212ENST00000568539 TTLL12Q14166 644 aaPredicted RBP9.96□□□□□ -0.82
SF3B3-212ENST00000568539 NOL9Q5SY16 702 aaKnown RBP9.96□□□□□ -0.82
SF3B3-212ENST00000568539 LDLRAD1Q5T700 205 aa9.96□□□□□ -0.82
SF3B3-212ENST00000568539 TMEM179Q6ZVK1 233 aa9.96□□□□□ -0.82
SF3B3-212ENST00000568539 CHST3Q7LGC8 479 aa9.96□□□□□ -0.82
SF3B3-212ENST00000568539 ARMC9Q7Z3E5 817 aa9.96□□□□□ -0.82
SF3B3-212ENST00000568539 SCYL3Q8IZE3 742 aa9.96□□□□□ -0.82
SF3B3-212ENST00000568539 KCNV2Q8TDN2 545 aa9.96□□□□□ -0.82
SF3B3-212ENST00000568539 ZKSCAN4Q969J2 545 aaPredicted RBP9.96□□□□□ -0.82
SF3B3-212ENST00000568539 ZKSCAN3Q9BRR0 538 aa9.96□□□□□ -0.82
SF3B3-212ENST00000568539 MTA3Q9BTC8 594 aa9.96□□□□□ -0.82
SF3B3-212ENST00000568539 GBA2Q9HCG7 927 aaPredicted RBP9.96□□□□□ -0.82
SF3B3-212ENST00000568539 CABP5Q9NP86 173 aa9.96□□□□□ -0.82
SF3B3-212ENST00000568539 GINM1Q9NU53 330 aa9.96□□□□□ -0.82
SF3B3-212ENST00000568539 ZBTB21Q9ULJ3 1066 aa9.96□□□□□ -0.82
SF3B3-212ENST00000568539 CYP46A1Q9Y6A2 500 aa9.96□□□□□ -0.82
SF3B3-212ENST00000568539 SNCAIPQ9Y6H5 919 aa9.96□□□□□ -0.82
SF3B3-212ENST00000568539 UNCXA6NJT0 531 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 UBE2Q2LH0YL09 131 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 ASNSP08243 561 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 VGLL4Q14135 290 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 SEPT2Q15019 361 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 RABEP1Q15276 862 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 SEC23AQ15436 765 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 RCSD1Q6JBY9 416 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 IQCA1Q86XH1 822 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 CLEC10AQ8IUN9 316 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 SIAH1Q8IUQ4 282 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 ANKRD13AQ8IZ07 590 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 C2orf69Q8N8R5 385 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 IGDCC4Q8TDY8 1250 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 CEP95Q96GE4 821 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 MS4A3Q96HJ5 214 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 MS4A4AQ96JQ5 239 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 TMEM87BQ96K49 555 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 TCEANC2Q96MN5 208 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 ZSCAN10Q96SZ4 725 aaPredicted RBP9.95□□□□□ -0.82
SF3B3-212ENST00000568539 UBAC1Q9BSL1 405 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 KANSL2Q9H9L4 492 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 MTMR4Q9NYA4 1195 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.95□□□□□ -0.82
SF3B3-212ENST00000568539 TNKSO95271 1327 aa9.95□□□□□ -0.82
SF3B3-212ENST00000568539 BAZ2AQ9UIF9 1905 aaKnown RBP9.95□□□□□ -0.82
SF3B3-212ENST00000568539 MYH1P12882 1939 aa9.94□□□□□ -0.82
SF3B3-212ENST00000568539 SH2B2O14492 632 aaPredicted RBP9.94□□□□□ -0.82
SF3B3-212ENST00000568539 IFIT3O14879 490 aaKnown RBP9.94□□□□□ -0.82
SF3B3-212ENST00000568539 PTPRAP18433 802 aa9.94□□□□□ -0.82
SF3B3-212ENST00000568539 NEK4P51957 841 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms