RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 ACPPP15309 386 aa7.73□□□□□ -1.17
VPS39-209ENST00000568029 POLD1P28340 1107 aa7.73□□□□□ -1.17
VPS39-209ENST00000568029 RPS26P11Q5JNZ5 115 aaPredicted RBP7.73□□□□□ -1.17
VPS39-209ENST00000568029 C20orf204Q6ZNR8 217 aa7.73□□□□□ -1.17
VPS39-209ENST00000568029 HFE2Q6ZVN8 426 aa7.73□□□□□ -1.17
VPS39-209ENST00000568029 C3orf58Q8NDZ4 430 aa7.73□□□□□ -1.17
VPS39-209ENST00000568029 EDARADDQ8WWZ3 215 aa7.73□□□□□ -1.17
VPS39-209ENST00000568029 PUS7Q96PZ0 661 aaKnown RBP7.73□□□□□ -1.17
VPS39-209ENST00000568029 ADAM19Q9H013 955 aa7.73□□□□□ -1.17
VPS39-209ENST00000568029 STARD13Q9Y3M8 1113 aa7.73□□□□□ -1.17
VPS39-209ENST00000568029 C5P01031 1676 aa7.73□□□□□ -1.17
VPS39-209ENST00000568029 NFAT5O94916 1531 aa7.73□□□□□ -1.17
VPS39-209ENST00000568029 USP31Q70CQ4 1352 aa7.72□□□□□ -1.17
VPS39-209ENST00000568029 NPC1L1Q9UHC9 1359 aa7.72□□□□□ -1.17
VPS39-209ENST00000568029 SBNO2Q9Y2G9 1366 aa7.72□□□□□ -1.17
VPS39-209ENST00000568029 SCAMP3O14828 347 aaKnown RBP7.72□□□□□ -1.17
VPS39-209ENST00000568029 GRIN3BO60391 1043 aa7.72□□□□□ -1.17
VPS39-209ENST00000568029 USP17L7P0C7H9 530 aa7.72□□□□□ -1.17
VPS39-209ENST00000568029 ATP11AP98196 1134 aa7.72□□□□□ -1.17
VPS39-209ENST00000568029 PSAPL1Q6NUJ1 521 aa7.72□□□□□ -1.17
VPS39-209ENST00000568029 C1orf229Q6ZS94 237 aaPredicted RBP7.72□□□□□ -1.17
VPS39-209ENST00000568029 MICALL1Q8N3F8 863 aa7.72□□□□□ -1.17
VPS39-209ENST00000568029 JMYQ8N9B5 988 aa7.72□□□□□ -1.17
VPS39-209ENST00000568029 POP1Q99575 1024 aaKnown RBP7.72□□□□□ -1.17
VPS39-209ENST00000568029 SMG9Q9H0W8 520 aaKnown RBP7.72□□□□□ -1.17
VPS39-209ENST00000568029 NMRK2Q9NPI5 230 aa7.72□□□□□ -1.17
VPS39-209ENST00000568029 PKD1L3Q7Z443 1732 aa7.72□□□□□ -1.17
VPS39-209ENST00000568029 NSD2O96028 1365 aa7.71□□□□□ -1.17
VPS39-209ENST00000568029 SMG6Q86US8 1419 aaKnown RBP7.71□□□□□ -1.17
VPS39-209ENST00000568029 RGS9O75916 674 aaPredicted RBP7.71□□□□□ -1.18
VPS39-209ENST00000568029 PTPRAP18433 802 aa7.71□□□□□ -1.18
VPS39-209ENST00000568029 TSNAXIP1Q2TAA8 658 aa7.71□□□□□ -1.18
VPS39-209ENST00000568029 GALNT6Q8NCL4 622 aa7.71□□□□□ -1.18
VPS39-209ENST00000568029 BSNDQ8WZ55 320 aa7.71□□□□□ -1.18
VPS39-209ENST00000568029 NUDCQ9Y266 331 aa7.71□□□□□ -1.18
VPS39-209ENST00000568029 N4BP2Q86UW6 1770 aaPredicted RBP7.71□□□□□ -1.18
VPS39-209ENST00000568029 A0A096LPE4 126 aa7.7□□□□□ -1.18
VPS39-209ENST00000568029 A0A1W2PPZ6 126 aa7.7□□□□□ -1.18
VPS39-209ENST00000568029 CELA2BP08218 269 aaPredicted RBP7.7□□□□□ -1.18
VPS39-209ENST00000568029 TCF3P15923 654 aa7.7□□□□□ -1.18
VPS39-209ENST00000568029 GRIA4P48058 902 aa7.7□□□□□ -1.18
VPS39-209ENST00000568029 CEP135Q66GS9 1140 aa7.7□□□□□ -1.18
VPS39-209ENST00000568029 CHSY3Q70JA7 882 aa7.7□□□□□ -1.18
VPS39-209ENST00000568029 SMIM5Q71RC9 77 aa7.7□□□□□ -1.18
VPS39-209ENST00000568029 AMIGO3Q86WK7 504 aa7.7□□□□□ -1.18
VPS39-209ENST00000568029 COL23A1Q86Y22 540 aaPredicted RBP7.7□□□□□ -1.18
VPS39-209ENST00000568029 BTBD6Q96KE9 485 aa7.7□□□□□ -1.18
VPS39-209ENST00000568029 HHIPQ96QV1 700 aa7.7□□□□□ -1.18
VPS39-209ENST00000568029 CDK19Q9BWU1 502 aa7.7□□□□□ -1.18
VPS39-209ENST00000568029 SOX13Q9UN79 622 aa7.7□□□□□ -1.18
VPS39-209ENST00000568029 LTN1O94822 1766 aa7.69□□□□□ -1.18
VPS39-209ENST00000568029 TAF1LQ8IZX4 1826 aa7.69□□□□□ -1.18
VPS39-209ENST00000568029 EIF4EBP3O60516 100 aaPredicted RBP7.69□□□□□ -1.18
VPS39-209ENST00000568029 PPP2R1AP30153 589 aa7.69□□□□□ -1.18
VPS39-209ENST00000568029 FCGRTP55899 365 aa7.69□□□□□ -1.18
VPS39-209ENST00000568029 WDR43Q15061 677 aaKnown RBP eCLIP7.69□□□□□ -1.18
VPS39-209ENST00000568029 TAF1CQ15572 869 aaPredicted RBP7.69□□□□□ -1.18
VPS39-209ENST00000568029 GRIK5Q16478 980 aa7.69□□□□□ -1.18
VPS39-209ENST00000568029 DTHD1Q6ZMT9 781 aa7.69□□□□□ -1.18
VPS39-209ENST00000568029 TMEM87AQ8NBN3 555 aa7.69□□□□□ -1.18
VPS39-209ENST00000568029 MUC3BQ9H195 1237 aa7.69□□□□□ -1.18
VPS39-209ENST00000568029 ZNF576Q9H609 170 aa7.69□□□□□ -1.18
VPS39-209ENST00000568029 TFCP2L1Q9NZI6 479 aa7.69□□□□□ -1.18
VPS39-209ENST00000568029 EVC2Q86UK5 1308 aa7.69□□□□□ -1.18
VPS39-209ENST00000568029 IGSF1Q8N6C5 1336 aa7.69□□□□□ -1.18
VPS39-209ENST00000568029 LILRB5O75023 590 aa7.68□□□□□ -1.18
VPS39-209ENST00000568029 TRPA1O75762 1119 aa7.68□□□□□ -1.18
VPS39-209ENST00000568029 ALBP02768 609 aa7.68□□□□□ -1.18
VPS39-209ENST00000568029 HSPA1AP0DMV8 641 aaKnown RBP7.68□□□□□ -1.18
VPS39-209ENST00000568029 HSPA1BP0DMV9 641 aaKnown RBP7.68□□□□□ -1.18
VPS39-209ENST00000568029 LYPD4Q6UWN0 246 aa7.68□□□□□ -1.18
VPS39-209ENST00000568029 NOC4LQ9BVI4 516 aaKnown RBP7.68□□□□□ -1.18
VPS39-209ENST00000568029 CARD10Q9BWT7 1032 aa7.68□□□□□ -1.18
VPS39-209ENST00000568029 CEP44Q9C0F1 390 aa7.68□□□□□ -1.18
VPS39-209ENST00000568029 CLEC4MQ9H2X3 399 aaPredicted RBP7.68□□□□□ -1.18
VPS39-209ENST00000568029 ENAMQ9NRM1 1142 aa7.68□□□□□ -1.18
VPS39-209ENST00000568029 KCPQ6ZWJ8 1503 aa7.68□□□□□ -1.18
VPS39-209ENST00000568029 FAM177BA6PVY3 158 aa7.67□□□□□ -1.18
VPS39-209ENST00000568029 SHISA8B8ZZ34 492 aa7.67□□□□□ -1.18
VPS39-209ENST00000568029 EXOC5O00471 708 aa7.67□□□□□ -1.18
VPS39-209ENST00000568029 TOMM70O94826 608 aa7.67□□□□□ -1.18
VPS39-209ENST00000568029 CDC27P30260 824 aa7.67□□□□□ -1.18
VPS39-209ENST00000568029 AFF1P51825 1210 aaKnown RBP7.67□□□□□ -1.18
VPS39-209ENST00000568029 FANCCQ00597 558 aa7.67□□□□□ -1.18
VPS39-209ENST00000568029 MAP3K10Q02779 954 aa7.67□□□□□ -1.18
VPS39-209ENST00000568029 JPH1Q9HDC5 661 aaPredicted RBP7.67□□□□□ -1.18
VPS39-209ENST00000568029 TRIM33Q9UPN9 1127 aa7.67□□□□□ -1.18
VPS39-209ENST00000568029 FAM208AQ9UK61 1670 aaKnown RBP7.67□□□□□ -1.18
VPS39-209ENST00000568029 RGPD2P0DJD1 1756 aa7.66□□□□□ -1.18
VPS39-209ENST00000568029 METTL12A8MUP2 240 aa7.66□□□□□ -1.18
VPS39-209ENST00000568029 M0R082 166 aa7.66□□□□□ -1.18
VPS39-209ENST00000568029 ZNF76P36508 570 aa7.66□□□□□ -1.18
VPS39-209ENST00000568029 SPRED3Q2MJR0 410 aa7.66□□□□□ -1.18
VPS39-209ENST00000568029 ZNF385CQ66K41 422 aaPredicted RBP7.66□□□□□ -1.18
VPS39-209ENST00000568029 SV2BQ7L1I2 683 aa7.66□□□□□ -1.18
VPS39-209ENST00000568029 VN1R5Q7Z5H4 357 aa7.66□□□□□ -1.18
VPS39-209ENST00000568029 NGEFQ8N5V2 710 aa7.66□□□□□ -1.18
VPS39-209ENST00000568029 ZNF417Q8TAU3 575 aa7.66□□□□□ -1.18
VPS39-209ENST00000568029 ASAP3Q8TDY4 903 aa7.66□□□□□ -1.18
VPS39-209ENST00000568029 WNT8BQ93098 351 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms