RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 TMEM87BQ96K49 555 aa15.16■□□□□ 0.02
VPS4A-204ENST00000566354 MAP3K14Q99558 947 aa15.16■□□□□ 0.02
VPS4A-204ENST00000566354 TMX1Q9H3N1 280 aa15.16■□□□□ 0.02
VPS4A-204ENST00000566354 GNL3LQ9NVN8 582 aaKnown RBP15.16■□□□□ 0.02
VPS4A-204ENST00000566354 CUTAO60888 179 aa15.15■□□□□ 0.02
VPS4A-204ENST00000566354 TRIM29Q14134 588 aa15.15■□□□□ 0.02
VPS4A-204ENST00000566354 TERF2Q15554 542 aa15.15■□□□□ 0.02
VPS4A-204ENST00000566354 SLC9C2Q5TAH2 1124 aa15.15■□□□□ 0.02
VPS4A-204ENST00000566354 APOA5Q6Q788 366 aa15.15■□□□□ 0.02
VPS4A-204ENST00000566354 AIFM3Q96NN9 605 aa15.15■□□□□ 0.02
VPS4A-204ENST00000566354 ZNF219Q9P2Y4 722 aaPredicted RBP15.15■□□□□ 0.02
VPS4A-204ENST00000566354 MYH13Q9UKX3 1938 aa15.15■□□□□ 0.02
VPS4A-204ENST00000566354 ATP2B4P23634 1241 aa15.15■□□□□ 0.02
VPS4A-204ENST00000566354 BMS1Q14692 1282 aaKnown RBP15.15■□□□□ 0.02
VPS4A-204ENST00000566354 UBE3CQ15386 1083 aa15.15■□□□□ 0.02
VPS4A-204ENST00000566354 CFAP100Q494V2 611 aa15.15■□□□□ 0.02
VPS4A-204ENST00000566354 CYB5R4Q7L1T6 521 aa15.15■□□□□ 0.02
VPS4A-204ENST00000566354 FCHSD1Q86WN1 690 aa15.15■□□□□ 0.02
VPS4A-204ENST00000566354 ELOA2Q8IYF1 753 aaPredicted RBP15.15■□□□□ 0.02
VPS4A-204ENST00000566354 SRRTQ9BXP5 876 aaKnown RBP15.15■□□□□ 0.02
VPS4A-204ENST00000566354 C6orf229H3BNL8 230 aa15.14■□□□□ 0.01
VPS4A-204ENST00000566354 IARSP41252 1262 aaKnown RBP15.14■□□□□ 0.01
VPS4A-204ENST00000566354 FAM193AP78312 1265 aa15.14■□□□□ 0.01
VPS4A-204ENST00000566354 PNOCQ13519 176 aa15.14■□□□□ 0.01
VPS4A-204ENST00000566354 ILDR2Q71H61 639 aa15.14■□□□□ 0.01
VPS4A-204ENST00000566354 TBC1D10CQ8IV04 446 aa15.14■□□□□ 0.01
VPS4A-204ENST00000566354 VSTM4Q8IW00 320 aa15.14■□□□□ 0.01
VPS4A-204ENST00000566354 WWC3Q9ULE0 1092 aa15.14■□□□□ 0.01
VPS4A-204ENST00000566354 JAG2Q9Y219 1238 aa15.14■□□□□ 0.01
VPS4A-204ENST00000566354 DOCK2Q92608 1830 aa15.14■□□□□ 0.01
VPS4A-204ENST00000566354 ZBTB43O43298 467 aa15.14■□□□□ 0.01
VPS4A-204ENST00000566354 APPP05067 770 aa15.14■□□□□ 0.01
VPS4A-204ENST00000566354 KRBA2Q6ZNG9 492 aa15.14■□□□□ 0.01
VPS4A-204ENST00000566354 ZNF446Q9NWS9 450 aa15.14■□□□□ 0.01
VPS4A-204ENST00000566354 DNAI1Q9UI46 699 aa15.14■□□□□ 0.01
VPS4A-204ENST00000566354 DUOX1Q9NRD9 1551 aa15.13■□□□□ 0.01
VPS4A-204ENST00000566354 ZSCAN12O43309 604 aa15.13■□□□□ 0.01
VPS4A-204ENST00000566354 TOP1P11387 765 aaKnown RBP15.13■□□□□ 0.01
VPS4A-204ENST00000566354 CDC27P30260 824 aa15.13■□□□□ 0.01
VPS4A-204ENST00000566354 NTRK3Q16288 839 aa15.13■□□□□ 0.01
VPS4A-204ENST00000566354 SGMS1Q86VZ5 419 aa15.13■□□□□ 0.01
VPS4A-204ENST00000566354 IGDCC4Q8TDY8 1250 aa15.13■□□□□ 0.01
VPS4A-204ENST00000566354 DPF2Q92785 391 aa15.13■□□□□ 0.01
VPS4A-204ENST00000566354 PHKBQ93100 1093 aa15.13■□□□□ 0.01
VPS4A-204ENST00000566354 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.13■□□□□ 0.01
VPS4A-204ENST00000566354 HOOK1Q9UJC3 728 aaKnown RBP15.13■□□□□ 0.01
VPS4A-204ENST00000566354 KCNH3Q9ULD8 1083 aa15.13■□□□□ 0.01
VPS4A-204ENST00000566354 POLD1P28340 1107 aa15.12■□□□□ 0.01
VPS4A-204ENST00000566354 LONRF3Q496Y0 759 aa15.12■□□□□ 0.01
VPS4A-204ENST00000566354 TRIM65Q6PJ69 517 aa15.12■□□□□ 0.01
VPS4A-204ENST00000566354 METTL16Q86W50 562 aaKnown RBP15.12■□□□□ 0.01
VPS4A-204ENST00000566354 MICU3Q86XE3 530 aa15.12■□□□□ 0.01
VPS4A-204ENST00000566354 CNNM3Q8NE01 707 aa15.12■□□□□ 0.01
VPS4A-204ENST00000566354 CNKSR1Q969H4 720 aa15.12■□□□□ 0.01
VPS4A-204ENST00000566354 YY1AP1Q9H869 796 aa15.12■□□□□ 0.01
VPS4A-204ENST00000566354 ABCF2Q9UG63 623 aa15.12■□□□□ 0.01
VPS4A-204ENST00000566354 DENND2AQ9ULE3 1009 aa15.12■□□□□ 0.01
VPS4A-204ENST00000566354 KIF13BQ9NQT8 1826 aa15.12■□□□□ 0.01
VPS4A-204ENST00000566354 B4E1Z4 1266 aa15.12■□□□□ 0.01
VPS4A-204ENST00000566354 DPEP1P16444 411 aa15.12■□□□□ 0.01
VPS4A-204ENST00000566354 GRIPAP1Q4V328 841 aa15.12■□□□□ 0.01
VPS4A-204ENST00000566354 DPP8Q6V1X1 898 aaPredicted RBP15.12■□□□□ 0.01
VPS4A-204ENST00000566354 C15orf52Q6ZUT6 534 aaKnown RBP15.12■□□□□ 0.01
VPS4A-204ENST00000566354 CLIC6Q96NY7 704 aa15.12■□□□□ 0.01
VPS4A-204ENST00000566354 FANCLQ9NW38 375 aa15.12■□□□□ 0.01
VPS4A-204ENST00000566354 PCDHA5Q9Y5H7 936 aa15.12■□□□□ 0.01
VPS4A-204ENST00000566354 DLEC1Q9Y238 1755 aa15.12■□□□□ 0.01
VPS4A-204ENST00000566354 ARHGAP6O43182 974 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 PDE6AP16499 860 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 RXRAP19793 462 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 KCNA3P22001 575 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 LIFRP42702 1097 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 ARHGAP29Q52LW3 1261 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 NFXL1Q6ZNB6 911 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 FOXP4Q8IVH2 680 aaPredicted RBP15.11■□□□□ 0.01
VPS4A-204ENST00000566354 REXO1L1PQ8IX06 675 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 KRI1Q8N9T8 703 aaKnown RBP15.11■□□□□ 0.01
VPS4A-204ENST00000566354 UBXN4Q92575 508 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 STK36Q9NRP7 1315 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 GOLGA8AA7E2F4 631 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 RIMBP2O15034 1052 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 SEMA3EO15041 775 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 ALX1Q15699 326 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 ZNF804AQ7Z570 1209 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 CREBRFQ8IUR6 639 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 MAGEB6Q8N7X4 407 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 LRRN4CLQ8ND94 238 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 C7orf43Q8WVR3 580 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 WASF1Q92558 559 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 SGIP1Q9BQI5 828 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 TMX4Q9H1E5 349 aaPredicted RBP15.11■□□□□ 0.01
VPS4A-204ENST00000566354 LY9Q9HBG7 655 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 ARGLU1Q9NWB6 273 aaPredicted RBP15.11■□□□□ 0.01
VPS4A-204ENST00000566354 LRP2BPQ9P2M1 347 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 ZNF532Q9HCE3 1301 aa15.11■□□□□ 0.01
VPS4A-204ENST00000566354 TCRBV5S4A2TA0A5A2 114 aa15.1■□□□□ 0.01
VPS4A-204ENST00000566354 TPM1P09493 284 aa15.1■□□□□ 0.01
VPS4A-204ENST00000566354 CLCN6P51797 869 aa15.1■□□□□ 0.01
VPS4A-204ENST00000566354 MDM2Q00987 491 aaPredicted RBP15.1■□□□□ 0.01
VPS4A-204ENST00000566354 SSRP1Q08945 709 aaKnown RBP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms