RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 NUDT12Q9BQG2 462 aa22.67■■□□□ 1.22
CLN3-218ENST00000565688 NR2E3Q9Y5X4 410 aa22.67■■□□□ 1.22
CLN3-218ENST00000565688 RPTORQ8N122 1335 aa22.66■■□□□ 1.22
CLN3-218ENST00000565688 XRCC5P13010 732 aaKnown RBP22.66■■□□□ 1.22
CLN3-218ENST00000565688 TRMT44Q8IYL2 757 aaKnown RBP22.66■■□□□ 1.22
CLN3-218ENST00000565688 HMX1Q9NP08 348 aaPredicted RBP22.66■■□□□ 1.22
CLN3-218ENST00000565688 MCM9Q9NXL9 1143 aa22.66■■□□□ 1.22
CLN3-218ENST00000565688 DDX60LQ5H9U9 1706 aaKnown RBP22.65■■□□□ 1.22
CLN3-218ENST00000565688 TCRBV5S4A2TA0A5A2 114 aa22.65■■□□□ 1.22
CLN3-218ENST00000565688 ATP5JP18859 108 aa22.65■■□□□ 1.22
CLN3-218ENST00000565688 GABPAQ06546 454 aa22.65■■□□□ 1.22
CLN3-218ENST00000565688 ZYXQ15942 572 aaKnown RBP22.65■■□□□ 1.22
CLN3-218ENST00000565688 PAGR1Q9BTK6 254 aa22.65■■□□□ 1.22
CLN3-218ENST00000565688 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.65■■□□□ 1.221e-8■■■■■ 50
CLN3-218ENST00000565688 BCL11AQ9H165 835 aa22.65■■□□□ 1.22
CLN3-218ENST00000565688 PAG1Q9NWQ8 432 aa22.65■■□□□ 1.22
CLN3-218ENST00000565688 RABGAP1Q9Y3P9 1069 aa22.65■■□□□ 1.22
CLN3-218ENST00000565688 ANKLE1Q8NAG6 615 aa22.64■■□□□ 1.21
CLN3-218ENST00000565688 NAV1Q8NEY1 1877 aa22.64■■□□□ 1.21
CLN3-218ENST00000565688 PEX10O60683 326 aa22.63■■□□□ 1.21
CLN3-218ENST00000565688 VCAM1P19320 739 aa22.63■■□□□ 1.21
CLN3-218ENST00000565688 CYP2B6P20813 491 aa22.63■■□□□ 1.21
CLN3-218ENST00000565688 FXR1P51114 621 aaKnown RBP eCLIP22.63■■□□□ 1.21
CLN3-218ENST00000565688 CCNA1P78396 465 aa22.63■■□□□ 1.21
CLN3-218ENST00000565688 Q3C1V9 767 aa22.63■■□□□ 1.21
CLN3-218ENST00000565688 CATSPERGQ6ZRH7 1159 aa22.63■■□□□ 1.21
CLN3-218ENST00000565688 TRIB2Q92519 343 aa22.63■■□□□ 1.21
CLN3-218ENST00000565688 DCP1AQ9NPI6 582 aaPredicted RBP22.63■■□□□ 1.21
CLN3-218ENST00000565688 PLXNB2O15031 1838 aa22.62■■□□□ 1.21
CLN3-218ENST00000565688 GPR142Q7Z601 462 aa22.62■■□□□ 1.21
CLN3-218ENST00000565688 NECAB2Q7Z6G3 386 aa22.62■■□□□ 1.21
CLN3-218ENST00000565688 PLEKHH3Q7Z736 793 aa22.62■■□□□ 1.21
CLN3-218ENST00000565688 LCORLQ8N3X6 602 aa22.62■■□□□ 1.21
CLN3-218ENST00000565688 ACER1Q8TDN7 264 aa22.62■■□□□ 1.21
CLN3-218ENST00000565688 SDR42E1Q8WUS8 393 aa22.62■■□□□ 1.21
CLN3-218ENST00000565688 EDC3Q96F86 508 aaKnown RBP22.62■■□□□ 1.21
CLN3-218ENST00000565688 HAUS7Q99871 368 aa22.62■■□□□ 1.21
CLN3-218ENST00000565688 PORCNQ9H237 461 aa22.62■■□□□ 1.21
CLN3-218ENST00000565688 BOLA2Q9H3K6 86 aa22.62■■□□□ 1.21
CLN3-218ENST00000565688 CWC22Q9HCG8 908 aaKnown RBP22.62■■□□□ 1.21
CLN3-218ENST00000565688 ATP8A2Q9NTI2 1148 aa22.62■■□□□ 1.21
CLN3-218ENST00000565688 TRIOBPQ9H2D6 2365 aa22.61■■□□□ 1.21
CLN3-218ENST00000565688 EVI5O60447 810 aa22.61■■□□□ 1.21
CLN3-218ENST00000565688 GLRX3O76003 335 aaKnown RBP22.61■■□□□ 1.21
CLN3-218ENST00000565688 ADD2P35612 726 aa22.61■■□□□ 1.21
CLN3-218ENST00000565688 RGS2P41220 211 aa22.61■■□□□ 1.21
CLN3-218ENST00000565688 TRIM32Q13049 653 aa22.61■■□□□ 1.21
CLN3-218ENST00000565688 MAP3K21Q5TCX8 1036 aa22.61■■□□□ 1.21
CLN3-218ENST00000565688 CHRDL2Q6WN34 429 aa22.61■■□□□ 1.21
CLN3-218ENST00000565688 LBX2Q6XYB7 198 aa22.61■■□□□ 1.21
CLN3-218ENST00000565688 USP6NLQ92738 828 aa22.61■■□□□ 1.21
CLN3-218ENST00000565688 PAWRQ96IZ0 340 aaKnown RBP22.61■■□□□ 1.21
CLN3-218ENST00000565688 LRRCC1Q9C099 1032 aa22.61■■□□□ 1.21
CLN3-218ENST00000565688 SWAP70Q9UH65 585 aa22.61■■□□□ 1.21
CLN3-218ENST00000565688 RANBP2P49792 3224 aaKnown RBP22.61■■□□□ 1.21
CLN3-218ENST00000565688 MPHOSPH10O00566 681 aaKnown RBP22.6■■□□□ 1.21
CLN3-218ENST00000565688 PRKAR2AP13861 404 aaKnown RBP22.6■■□□□ 1.21
CLN3-218ENST00000565688 ZKSCAN1P17029 563 aaPredicted RBP22.6■■□□□ 1.21
CLN3-218ENST00000565688 GUCY1A2P33402 732 aa22.6■■□□□ 1.21
CLN3-218ENST00000565688 SEPT2Q15019 361 aa22.6■■□□□ 1.21
CLN3-218ENST00000565688 MORN1Q5T089 497 aa22.6■■□□□ 1.21
CLN3-218ENST00000565688 POTEEQ6S8J3 1075 aa22.6■■□□□ 1.21
CLN3-218ENST00000565688 ARMT1Q9H993 441 aa22.6■■□□□ 1.21
CLN3-218ENST00000565688 MBD4O95243 580 aa22.59■■□□□ 1.21
CLN3-218ENST00000565688 TMEM179Q6ZVK1 233 aa22.59■■□□□ 1.21
CLN3-218ENST00000565688 AMOTL1Q8IY63 956 aa22.59■■□□□ 1.21
CLN3-218ENST00000565688 APBA2Q99767 749 aa22.59■■□□□ 1.21
CLN3-218ENST00000565688 RPAP3Q9H6T3 665 aaPredicted RBP22.59■■□□□ 1.21
CLN3-218ENST00000565688 CNMDO75829 334 aa22.58■■□□□ 1.21
CLN3-218ENST00000565688 UBE3CQ15386 1083 aa22.58■■□□□ 1.21
CLN3-218ENST00000565688 ZSCAN25Q6NSZ9 544 aa22.58■■□□□ 1.21
CLN3-218ENST00000565688 DDRGK1Q96HY6 314 aa22.58■■□□□ 1.21
CLN3-218ENST00000565688 C20orf194Q5TEA3 1177 aa22.57■■□□□ 1.2
CLN3-218ENST00000565688 NBPF3Q9H094 633 aa22.57■■□□□ 1.2
CLN3-218ENST00000565688 OGDHLQ9ULD0 1010 aa22.57■■□□□ 1.2
CLN3-218ENST00000565688 SLC15A5A6NIM6 579 aa22.56■■□□□ 1.2
CLN3-218ENST00000565688 CYP2D6P10635 497 aa22.56■■□□□ 1.2
CLN3-218ENST00000565688 EVX2Q03828 476 aa22.56■■□□□ 1.2
CLN3-218ENST00000565688 MAP2K5Q13163 448 aa22.56■■□□□ 1.2
CLN3-218ENST00000565688 DIS3LQ8TF46 1054 aaKnown RBP22.56■■□□□ 1.2
CLN3-218ENST00000565688 HOXC10Q9NYD6 342 aa22.56■■□□□ 1.2
CLN3-218ENST00000565688 RBM27Q9P2N5 1060 aaKnown RBP22.56■■□□□ 1.2
CLN3-218ENST00000565688 IVNS1ABPQ9Y6Y0 642 aa22.56■■□□□ 1.2
CLN3-218ENST00000565688 A0A1W2PRG0 241 aa22.55■■□□□ 1.2
CLN3-218ENST00000565688 SPDYE16A6NNV3 312 aaPredicted RBP22.55■■□□□ 1.2
CLN3-218ENST00000565688 PRKAB2O43741 272 aa22.55■■□□□ 1.2
CLN3-218ENST00000565688 CACNB2Q08289 660 aaPredicted RBP22.55■■□□□ 1.2
CLN3-218ENST00000565688 COG2Q14746 738 aa22.55■■□□□ 1.2
CLN3-218ENST00000565688 WDR78Q5VTH9 848 aa22.55■■□□□ 1.2
CLN3-218ENST00000565688 SLC44A5Q8NCS7 719 aa22.55■■□□□ 1.2
CLN3-218ENST00000565688 LPAR1Q92633 364 aa22.55■■□□□ 1.2
CLN3-218ENST00000565688 CCDC17Q96LX7 622 aa22.55■■□□□ 1.2
CLN3-218ENST00000565688 SH2D4AQ9H788 454 aa22.55■■□□□ 1.2
CLN3-218ENST00000565688 BTBD7Q9P203 1132 aa22.55■■□□□ 1.2
CLN3-218ENST00000565688 PTPREP23469 700 aa22.54■■□□□ 1.2
CLN3-218ENST00000565688 CCL14Q16627 93 aa22.54■■□□□ 1.2
CLN3-218ENST00000565688 SLFNL1Q499Z3 407 aa22.54■■□□□ 1.2
CLN3-218ENST00000565688 C12orf60Q5U649 245 aa22.54■■□□□ 1.2
CLN3-218ENST00000565688 DYNLL2Q96FJ2 89 aa22.54■■□□□ 1.2
CLN3-218ENST00000565688 TANGO6Q9C0B7 1094 aa22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms