RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 FAM217BQ9NTX9 383 aaPredicted RBP15.88■□□□□ 0.13
VPS39-206ENST00000562662 GGA3Q9NZ52 723 aa15.88■□□□□ 0.13
VPS39-206ENST00000562662 CHMP5Q9NZZ3 219 aa15.88■□□□□ 0.13
VPS39-206ENST00000562662 SMC3Q9UQE7 1217 aa15.88■□□□□ 0.13
VPS39-206ENST00000562662 PITPNM2Q9BZ72 1349 aa15.88■□□□□ 0.13
VPS39-206ENST00000562662 JAK2O60674 1132 aa15.87■□□□□ 0.13
VPS39-206ENST00000562662 DDAH1O94760 285 aa15.87■□□□□ 0.13
VPS39-206ENST00000562662 GJB2P29033 226 aa15.87■□□□□ 0.13
VPS39-206ENST00000562662 CDC27P30260 824 aa15.87■□□□□ 0.13
VPS39-206ENST00000562662 TROAPQ12815 778 aa15.87■□□□□ 0.13
VPS39-206ENST00000562662 SHROOM1Q2M3G4 852 aaPredicted RBP15.87■□□□□ 0.13
VPS39-206ENST00000562662 SYNE3Q6ZMZ3 975 aa15.87■□□□□ 0.13
VPS39-206ENST00000562662 CHMP4CQ96CF2 233 aa15.87■□□□□ 0.13
VPS39-206ENST00000562662 DEFB129Q9H1M3 183 aa15.87■□□□□ 0.13
VPS39-206ENST00000562662 MTMR4Q9NYA4 1195 aa15.87■□□□□ 0.13
VPS39-206ENST00000562662 DOCK1Q14185 1865 aa15.86■□□□□ 0.13
VPS39-206ENST00000562662 CATIPQ7Z7H3 387 aa15.86■□□□□ 0.13
VPS39-206ENST00000562662 CCDC144CPQ8IYA2 1237 aa15.86■□□□□ 0.13
VPS39-206ENST00000562662 TMEM47Q9BQJ4 181 aa15.86■□□□□ 0.13
VPS39-206ENST00000562662 KAT14Q9H8E8 782 aa15.86■□□□□ 0.13
VPS39-206ENST00000562662 SSC5DA1L4H1 1573 aa15.85■□□□□ 0.13
VPS39-206ENST00000562662 PTPDC1A2A3K4 754 aa15.85■□□□□ 0.13
VPS39-206ENST00000562662 POTECB2RU33 542 aa15.85■□□□□ 0.13
VPS39-206ENST00000562662 MPHOSPH10O00566 681 aaKnown RBP15.85■□□□□ 0.13
VPS39-206ENST00000562662 GDF11O95390 407 aa15.85■□□□□ 0.13
VPS39-206ENST00000562662 CALM1P0DP23 149 aa15.85■□□□□ 0.13
VPS39-206ENST00000562662 CALM2P0DP24 149 aa15.85■□□□□ 0.13
VPS39-206ENST00000562662 CALM3P0DP25 149 aa15.85■□□□□ 0.13
VPS39-206ENST00000562662 GUCY1A2P33402 732 aa15.85■□□□□ 0.13
VPS39-206ENST00000562662 EPHX2P34913 555 aa15.85■□□□□ 0.13
VPS39-206ENST00000562662 ADD1P35611 737 aaKnown RBP15.85■□□□□ 0.13
VPS39-206ENST00000562662 JAG1P78504 1218 aa15.85■□□□□ 0.13
VPS39-206ENST00000562662 NTRK3Q16288 839 aa15.85■□□□□ 0.13
VPS39-206ENST00000562662 RTN1Q16799 776 aa15.85■□□□□ 0.13
VPS39-206ENST00000562662 ABCB5Q2M3G0 1257 aa15.85■□□□□ 0.13
VPS39-206ENST00000562662 USP50Q70EL3 339 aaPredicted RBP15.85■□□□□ 0.13
VPS39-206ENST00000562662 CLEC10AQ8IUN9 316 aa15.85■□□□□ 0.13
VPS39-206ENST00000562662 FANCBQ8NB91 859 aa15.85■□□□□ 0.13
VPS39-206ENST00000562662 PNMA1Q8ND90 353 aa15.85■□□□□ 0.13
VPS39-206ENST00000562662 NUP133Q8WUM0 1156 aa15.85■□□□□ 0.13
VPS39-206ENST00000562662 STX8Q9UNK0 236 aa15.85■□□□□ 0.13
VPS39-206ENST00000562662 PPP2R3BQ9Y5P8 575 aa15.85■□□□□ 0.13
VPS39-206ENST00000562662 PAPPA2Q9BXP8 1791 aa15.85■□□□□ 0.13
VPS39-206ENST00000562662 BAZ2BQ9UIF8 2168 aaKnown RBP15.85■□□□□ 0.13
VPS39-206ENST00000562662 DHX16O60231 1041 aaKnown RBP15.84■□□□□ 0.13
VPS39-206ENST00000562662 TOP1P11387 765 aaKnown RBP15.84■□□□□ 0.13
VPS39-206ENST00000562662 NBPF12Q5TAG4 269 aaPredicted RBP15.84■□□□□ 0.13
VPS39-206ENST00000562662 TMEM179Q6ZVK1 233 aa15.84■□□□□ 0.13
VPS39-206ENST00000562662 MIGA2Q7L4E1 593 aa15.84■□□□□ 0.13
VPS39-206ENST00000562662 CPLX1O14810 134 aa15.83■□□□□ 0.12
VPS39-206ENST00000562662 TTLL1O95922 423 aa15.83■□□□□ 0.12
VPS39-206ENST00000562662 HMGN5P82970 282 aaKnown RBP15.83■□□□□ 0.12
VPS39-206ENST00000562662 PKP1Q13835 747 aa15.83■□□□□ 0.12
VPS39-206ENST00000562662 SEPT2Q15019 361 aa15.83■□□□□ 0.12
VPS39-206ENST00000562662 PPP2R5BQ15173 497 aa15.83■□□□□ 0.12
VPS39-206ENST00000562662 PPP4R3BQ5MIZ7 849 aa15.83■□□□□ 0.12
VPS39-206ENST00000562662 MAP3K14Q99558 947 aa15.83■□□□□ 0.12
VPS39-206ENST00000562662 TAF1DQ9H5J8 278 aaPredicted RBP15.83■□□□□ 0.12
VPS39-206ENST00000562662 OTOFQ9HC10 1997 aa15.83■□□□□ 0.12
VPS39-206ENST00000562662 PHIPQ8WWQ0 1821 aa15.82■□□□□ 0.12
VPS39-206ENST00000562662 IQCA1LA6NCM1 817 aa15.82■□□□□ 0.12
VPS39-206ENST00000562662 PHF20L1A8MW92 1017 aa15.82■□□□□ 0.12
VPS39-206ENST00000562662 GH2P01242 217 aa15.82■□□□□ 0.12
VPS39-206ENST00000562662 FDPSP14324 419 aaKnown RBP15.82■□□□□ 0.12
VPS39-206ENST00000562662 IFNAR1P17181 557 aa15.82■□□□□ 0.12
VPS39-206ENST00000562662 NUCB2P80303 420 aa15.82■□□□□ 0.12
VPS39-206ENST00000562662 GRM4Q14833 912 aa15.82■□□□□ 0.12
VPS39-206ENST00000562662 RAB3GAP1Q15042 981 aa15.82■□□□□ 0.12
VPS39-206ENST00000562662 DDX11Q96FC9 970 aa15.82■□□□□ 0.12
VPS39-206ENST00000562662 KANSL2Q9H9L4 492 aa15.82■□□□□ 0.12
VPS39-206ENST00000562662 CABP5Q9NP86 173 aa15.82■□□□□ 0.12
VPS39-206ENST00000562662 RBM28Q9NW13 759 aaKnown RBP15.82■□□□□ 0.12
VPS39-206ENST00000562662 NYAP2Q9P242 653 aa15.82■□□□□ 0.12
VPS39-206ENST00000562662 ZBTB21Q9ULJ3 1066 aa15.82■□□□□ 0.12
VPS39-206ENST00000562662 ZDHHC9Q9Y397 364 aa15.82■□□□□ 0.12
VPS39-206ENST00000562662 CCDC196A0A1B0GTZ2 297 aa15.81■□□□□ 0.12
VPS39-206ENST00000562662 PPFIA3O75145 1194 aa15.81■□□□□ 0.12
VPS39-206ENST00000562662 CDKL5O76039 1030 aa15.81■□□□□ 0.12
VPS39-206ENST00000562662 BRD1O95696 1058 aa15.81■□□□□ 0.12
VPS39-206ENST00000562662 SYT1P21579 422 aa15.81■□□□□ 0.12
VPS39-206ENST00000562662 CAP2P40123 477 aa15.81■□□□□ 0.12
VPS39-206ENST00000562662 ICA1Q05084 483 aa15.81■□□□□ 0.12
VPS39-206ENST00000562662 PRAMEF18Q5VWM3 479 aa15.81■□□□□ 0.12
VPS39-206ENST00000562662 CPLX2Q6PUV4 134 aaKnown RBP15.81■□□□□ 0.12
VPS39-206ENST00000562662 TMTC3Q6ZXV5 915 aa15.81■□□□□ 0.12
VPS39-206ENST00000562662 NBPF11Q86T75 865 aa15.81■□□□□ 0.12
VPS39-206ENST00000562662 SIAH1Q8IUQ4 282 aa15.81■□□□□ 0.12
VPS39-206ENST00000562662 LRRC47Q8N1G4 583 aaKnown RBP15.81■□□□□ 0.12
VPS39-206ENST00000562662 CTCFLQ8NI51 663 aaPredicted RBP15.81■□□□□ 0.12
VPS39-206ENST00000562662 ZC3H15Q8WU90 426 aaKnown RBP15.81■□□□□ 0.12
VPS39-206ENST00000562662 MKL1Q969V6 931 aa15.81■□□□□ 0.12
VPS39-206ENST00000562662 DCPSQ96C86 337 aaKnown RBP15.81■□□□□ 0.12
VPS39-206ENST00000562662 STK36Q9NRP7 1315 aa15.81■□□□□ 0.12
VPS39-206ENST00000562662 CLIP2Q9UDT6 1046 aa15.81■□□□□ 0.12
VPS39-206ENST00000562662 MAD2L2Q9UI95 211 aa15.81■□□□□ 0.12
VPS39-206ENST00000562662 MYH15Q9Y2K3 1946 aa15.81■□□□□ 0.12
VPS39-206ENST00000562662 PLEKHA8P1O95397 391 aa15.8■□□□□ 0.12
VPS39-206ENST00000562662 EEF2P13639 858 aaKnown RBP15.8■□□□□ 0.12
VPS39-206ENST00000562662 FUT2Q10981 343 aa15.8■□□□□ 0.12
VPS39-206ENST00000562662 DCAF15Q66K64 600 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms