RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 HMGCRP04035 888 aa14.14□□□□□ -0.15
USP3-220ENST00000561381 PDE6AP16499 860 aa14.14□□□□□ -0.15
USP3-220ENST00000561381 CYP2B6P20813 491 aa14.14□□□□□ -0.15
USP3-220ENST00000561381 HSP90AB4PQ58FF6 505 aa14.14□□□□□ -0.15
USP3-220ENST00000561381 USP17L2Q6R6M4 530 aa14.14□□□□□ -0.15
USP3-220ENST00000561381 CERS3Q8IU89 383 aa14.14□□□□□ -0.15
USP3-220ENST00000561381 GPRC5AQ8NFJ5 357 aa14.14□□□□□ -0.15
USP3-220ENST00000561381 DIS3LQ8TF46 1054 aaKnown RBP14.14□□□□□ -0.15
USP3-220ENST00000561381 TRIB2Q92519 343 aa14.14□□□□□ -0.15
USP3-220ENST00000561381 EDC3Q96F86 508 aaKnown RBP14.14□□□□□ -0.15
USP3-220ENST00000561381 EHD4Q9H223 541 aa14.14□□□□□ -0.15
USP3-220ENST00000561381 ZBTB40Q9NUA8 1239 aa14.14□□□□□ -0.15
USP3-220ENST00000561381 ZBTB47Q9UFB7 747 aaPredicted RBP14.14□□□□□ -0.15
USP3-220ENST00000561381 MAGEB6P1A0A0J9YX57 407 aa14.13□□□□□ -0.15
USP3-220ENST00000561381 GOLIM4O00461 696 aa14.13□□□□□ -0.15
USP3-220ENST00000561381 SHMT1P34896 483 aa14.13□□□□□ -0.15
USP3-220ENST00000561381 RAB3GAP1Q15042 981 aa14.13□□□□□ -0.15
USP3-220ENST00000561381 SLFNL1Q499Z3 407 aa14.13□□□□□ -0.15
USP3-220ENST00000561381 CERKLQ49MI3 558 aaPredicted RBP14.13□□□□□ -0.15
USP3-220ENST00000561381 SLC9C2Q5TAH2 1124 aa14.13□□□□□ -0.15
USP3-220ENST00000561381 TTC6Q86TZ1 520 aa14.13□□□□□ -0.15
USP3-220ENST00000561381 RASEFQ8IZ41 740 aa14.13□□□□□ -0.15
USP3-220ENST00000561381 CLASRPQ8N2M8 674 aaKnown RBP14.13□□□□□ -0.15
USP3-220ENST00000561381 ACER1Q8TDN7 264 aa14.13□□□□□ -0.15
USP3-220ENST00000561381 KIF1BPQ96EK5 621 aa14.13□□□□□ -0.15
USP3-220ENST00000561381 DNAJC2Q99543 621 aaKnown RBP14.13□□□□□ -0.15
USP3-220ENST00000561381 FEZ1Q99689 392 aa14.13□□□□□ -0.15
USP3-220ENST00000561381 PAGR1Q9BTK6 254 aa14.13□□□□□ -0.15
USP3-220ENST00000561381 PORCNQ9H237 461 aa14.13□□□□□ -0.15
USP3-220ENST00000561381 RBM27Q9P2N5 1060 aaKnown RBP14.13□□□□□ -0.15
USP3-220ENST00000561381 TCRBV5S4A2TA0A5A2 114 aa14.12□□□□□ -0.15
USP3-220ENST00000561381 IFIT2P09913 472 aaKnown RBP14.12□□□□□ -0.15
USP3-220ENST00000561381 GUCY1A2P33402 732 aa14.12□□□□□ -0.15
USP3-220ENST00000561381 ERVK-9P63128 1117 aa14.12□□□□□ -0.15
USP3-220ENST00000561381 ERVK-24P63145 666 aa14.12□□□□□ -0.15
USP3-220ENST00000561381 TTF1Q15361 905 aaPredicted RBP14.12□□□□□ -0.15
USP3-220ENST00000561381 ABCB5Q2M3G0 1257 aa14.12□□□□□ -0.15
USP3-220ENST00000561381 RPAP2Q8IXW5 612 aaPredicted RBP14.12□□□□□ -0.15
USP3-220ENST00000561381 PAWRQ96IZ0 340 aaKnown RBP14.12□□□□□ -0.15
USP3-220ENST00000561381 C12orf42Q96LP6 360 aa14.12□□□□□ -0.15
USP3-220ENST00000561381 DDX60LQ5H9U9 1706 aaKnown RBP14.12□□□□□ -0.15
USP3-220ENST00000561381 ZNF532Q9HCE3 1301 aa14.12□□□□□ -0.15
USP3-220ENST00000561381 CNMDO75829 334 aa14.11□□□□□ -0.15
USP3-220ENST00000561381 POLR3DP05423 398 aaPredicted RBP14.11□□□□□ -0.15
USP3-220ENST00000561381 CYP2D6P10635 497 aa14.11□□□□□ -0.15
USP3-220ENST00000561381 MS4A1P11836 297 aa14.11□□□□□ -0.15
USP3-220ENST00000561381 GABPAQ06546 454 aa14.11□□□□□ -0.15
USP3-220ENST00000561381 TMED8Q6PL24 325 aaPredicted RBP14.11□□□□□ -0.15
USP3-220ENST00000561381 GPR142Q7Z601 462 aa14.11□□□□□ -0.15
USP3-220ENST00000561381 LCORLQ8N3X6 602 aa14.11□□□□□ -0.15
USP3-220ENST00000561381 SDR42E1Q8WUS8 393 aa14.11□□□□□ -0.15
USP3-220ENST00000561381 NUDT12Q9BQG2 462 aa14.11□□□□□ -0.15
USP3-220ENST00000561381 HMX1Q9NP08 348 aaPredicted RBP14.11□□□□□ -0.15
USP3-220ENST00000561381 MCM9Q9NXL9 1143 aa14.11□□□□□ -0.15
USP3-220ENST00000561381 DDX19BQ9UMR2 479 aa14.11□□□□□ -0.15
USP3-220ENST00000561381 NR2E3Q9Y5X4 410 aa14.11□□□□□ -0.15
USP3-220ENST00000561381 RPTORQ8N122 1335 aa14.11□□□□□ -0.15
USP3-220ENST00000561381 NAV1Q8NEY1 1877 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 ALPK3Q96L96 1907 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 USP17L15C9J2P7 530 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 USP17L13C9JLJ4 530 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 USP17L11C9JVI0 530 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 USP17L18D6R9N7 530 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 USP17L22D6RA61 530 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 USP17L17D6RBQ6 530 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 USP17L19D6RCP7 530 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 USP17L20D6RJB6 530 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 EVI5O60447 810 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 HMMRO75330 724 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 CHGBP05060 677 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 VCAM1P19320 739 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 MAPK4P31152 587 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 USP17L24Q0WX57 530 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 SEPT2Q15019 361 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 CCL14Q16627 93 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 MORN1Q5T089 497 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 C20orf194Q5TEA3 1177 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 ASTLQ6HA08 431 aaPredicted RBP14.1□□□□□ -0.15
USP3-220ENST00000561381 CATSPERGQ6ZRH7 1159 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 SLC44A5Q8NCS7 719 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.1□□□□□ -0.15
USP3-220ENST00000561381 GTF3C2Q8WUA4 911 aaPredicted RBP14.1□□□□□ -0.15
USP3-220ENST00000561381 SOCS4Q8WXH5 440 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 USP6NLQ92738 828 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 KIF12Q96FN5 646 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 CRNKL1Q9BZJ0 848 aaKnown RBP14.1□□□□□ -0.15
USP3-220ENST00000561381 KIAA1683Q9H0B3 1180 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 PRO3102Q9H379 93 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 BOLA2Q9H3K6 86 aa14.1□□□□□ -0.15
USP3-220ENST00000561381 PRKAB2O43741 272 aa14.09□□□□□ -0.15
USP3-220ENST00000561381 RAB11FIP3O75154 756 aa14.09□□□□□ -0.15
USP3-220ENST00000561381 XRCC5P13010 732 aaKnown RBP14.09□□□□□ -0.15
USP3-220ENST00000561381 PDE3AQ14432 1141 aa14.09□□□□□ -0.15
USP3-220ENST00000561381 MAP3K21Q5TCX8 1036 aa14.09□□□□□ -0.15
USP3-220ENST00000561381 NECAB2Q7Z6G3 386 aa14.09□□□□□ -0.15
USP3-220ENST00000561381 PLEKHH3Q7Z736 793 aa14.09□□□□□ -0.15
USP3-220ENST00000561381 CCAR1Q8IX12 1150 aaKnown RBP14.09□□□□□ -0.15
USP3-220ENST00000561381 ARMT1Q9H993 441 aa14.09□□□□□ -0.15
USP3-220ENST00000561381 CABP5Q9NP86 173 aa14.09□□□□□ -0.15
USP3-220ENST00000561381 DCP1AQ9NPI6 582 aaPredicted RBP14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms