RNA–Protein interactions for RNA: ENST00000561128.1

CHRNA3-208, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

TSL 2

Gene CHRNA3, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-208ENST00000561128 CNMDO75829 334 aa15.24■□□□□ 0.03
CHRNA3-208ENST00000561128 GLRX3O76003 335 aaKnown RBP15.24■□□□□ 0.03
CHRNA3-208ENST00000561128 VCAM1P19320 739 aa15.24■□□□□ 0.03
CHRNA3-208ENST00000561128 EN2P19622 333 aaPredicted RBP15.24■□□□□ 0.03
CHRNA3-208ENST00000561128 CDK8P49336 464 aa15.24■□□□□ 0.03
CHRNA3-208ENST00000561128 PDE1AP54750 535 aa15.24■□□□□ 0.03
CHRNA3-208ENST00000561128 FAM110CQ1W6H9 321 aa15.24■□□□□ 0.03
CHRNA3-208ENST00000561128 C16orf86Q6ZW13 317 aa15.24■□□□□ 0.03
CHRNA3-208ENST00000561128 SMC5Q8IY18 1101 aa15.24■□□□□ 0.03
CHRNA3-208ENST00000561128 C12orf42Q96LP6 360 aa15.24■□□□□ 0.03
CHRNA3-208ENST00000561128 FEZ1Q99689 392 aa15.24■□□□□ 0.03
CHRNA3-208ENST00000561128 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.24■□□□□ 0.03
CHRNA3-208ENST00000561128 KIAA1683Q9H0B3 1180 aa15.24■□□□□ 0.03
CHRNA3-208ENST00000561128 GINM1Q9NU53 330 aa15.24■□□□□ 0.03
CHRNA3-208ENST00000561128 TMOD4Q9NZQ9 345 aa15.24■□□□□ 0.03
CHRNA3-208ENST00000561128 DOCK3Q8IZD9 2030 aa15.24■□□□□ 0.03
CHRNA3-208ENST00000561128 ROBO3Q96MS0 1386 aa15.24■□□□□ 0.03
CHRNA3-208ENST00000561128 MPHOSPH10O00566 681 aaKnown RBP15.23■□□□□ 0.03
CHRNA3-208ENST00000561128 ELNP15502 786 aa15.23■□□□□ 0.03
CHRNA3-208ENST00000561128 HOXA7P31268 230 aaPredicted RBP15.23■□□□□ 0.03
CHRNA3-208ENST00000561128 FCGRTP55899 365 aa15.23■□□□□ 0.03
CHRNA3-208ENST00000561128 HERVK_113P62684 666 aa15.23■□□□□ 0.03
CHRNA3-208ENST00000561128 B4GALNT3Q6L9W6 998 aa15.23■□□□□ 0.03
CHRNA3-208ENST00000561128 USP17L2Q6R6M4 530 aa15.23■□□□□ 0.03
CHRNA3-208ENST00000561128 SHISA4Q96DD7 197 aa15.23■□□□□ 0.03
CHRNA3-208ENST00000561128 FSD1Q9BTV5 496 aa15.23■□□□□ 0.03
CHRNA3-208ENST00000561128 RBPJLQ9UBG7 517 aa15.23■□□□□ 0.03
CHRNA3-208ENST00000561128 MORF4L1Q9UBU8 362 aa15.23■□□□□ 0.03
CHRNA3-208ENST00000561128 STAP2Q9UGK3 403 aa15.23■□□□□ 0.03
CHRNA3-208ENST00000561128 PNMA3Q9UL41 463 aa15.23■□□□□ 0.03
CHRNA3-208ENST00000561128 C19orf81C9J6K1 198 aa15.22■□□□□ 0.03
CHRNA3-208ENST00000561128 FLT3LGP49771 235 aa15.22■□□□□ 0.03
CHRNA3-208ENST00000561128 IRX3P78415 501 aaPredicted RBP15.22■□□□□ 0.03
CHRNA3-208ENST00000561128 Q3C1V9 767 aa15.22■□□□□ 0.03
CHRNA3-208ENST00000561128 ZMYM1Q5SVZ6 1142 aa15.22■□□□□ 0.03
CHRNA3-208ENST00000561128 ZSCAN25Q6NSZ9 544 aa15.22■□□□□ 0.03
CHRNA3-208ENST00000561128 GCC1Q96CN9 775 aa15.22■□□□□ 0.03
CHRNA3-208ENST00000561128 PORCNQ9H237 461 aa15.22■□□□□ 0.03
CHRNA3-208ENST00000561128 TACC3Q9Y6A5 838 aa15.22■□□□□ 0.03
CHRNA3-208ENST00000561128 BRCA2P51587 3418 aa15.21■□□□□ 0.03
CHRNA3-208ENST00000561128 TNPO2O14787 897 aaKnown RBP15.21■□□□□ 0.03
CHRNA3-208ENST00000561128 PAGR1Q9BTK6 254 aa15.21■□□□□ 0.03
CHRNA3-208ENST00000561128 RPAP3Q9H6T3 665 aaPredicted RBP15.21■□□□□ 0.03
CHRNA3-208ENST00000561128 A0A0D9SFI3 127 aa15.2■□□□□ 0.02
CHRNA3-208ENST00000561128 ERC2O15083 957 aa15.2■□□□□ 0.02
CHRNA3-208ENST00000561128 GNRH1P01148 92 aa15.2■□□□□ 0.02
CHRNA3-208ENST00000561128 RASA1P20936 1047 aa15.2■□□□□ 0.02
CHRNA3-208ENST00000561128 GRK4P32298 578 aa15.2■□□□□ 0.02
CHRNA3-208ENST00000561128 GCLCP48506 637 aaPredicted RBP15.2■□□□□ 0.02
CHRNA3-208ENST00000561128 TRIM32Q13049 653 aa15.2■□□□□ 0.02
CHRNA3-208ENST00000561128 VPS53Q5VIR6 699 aa15.2■□□□□ 0.02
CHRNA3-208ENST00000561128 TMEM179Q6ZVK1 233 aa15.2■□□□□ 0.02
CHRNA3-208ENST00000561128 RAET1EQ8TD07 263 aa15.2■□□□□ 0.02
CHRNA3-208ENST00000561128 FAM227BQ96M60 508 aa15.2■□□□□ 0.02
CHRNA3-208ENST00000561128 CABP5Q9NP86 173 aa15.2■□□□□ 0.02
CHRNA3-208ENST00000561128 BTBD7Q9P203 1132 aa15.2■□□□□ 0.02
CHRNA3-208ENST00000561128 ARPP21Q9UBL0 812 aaPredicted RBP15.2■□□□□ 0.02
CHRNA3-208ENST00000561128 SWAP70Q9UH65 585 aa15.2■□□□□ 0.02
CHRNA3-208ENST00000561128 SPDYE16A6NNV3 312 aaPredicted RBP15.19■□□□□ 0.02
CHRNA3-208ENST00000561128 PRDM1O75626 825 aa15.19■□□□□ 0.02
CHRNA3-208ENST00000561128 ZFYP08048 801 aaPredicted RBP15.19■□□□□ 0.02
CHRNA3-208ENST00000561128 PRMT2P55345 433 aa15.19■□□□□ 0.02
CHRNA3-208ENST00000561128 ICA1Q05084 483 aa15.19■□□□□ 0.02
CHRNA3-208ENST00000561128 PABPC4Q13310 644 aaKnown RBP eCLIP15.19■□□□□ 0.02
CHRNA3-208ENST00000561128 ARHGEF6Q15052 776 aa15.19■□□□□ 0.02
CHRNA3-208ENST00000561128 SBK1Q52WX2 424 aa15.19■□□□□ 0.02
CHRNA3-208ENST00000561128 CATSPERGQ6ZRH7 1159 aa15.19■□□□□ 0.02
CHRNA3-208ENST00000561128 SPICE1Q8N0Z3 855 aa15.19■□□□□ 0.02
CHRNA3-208ENST00000561128 GJD2Q9UKL4 321 aa15.19■□□□□ 0.02
CHRNA3-208ENST00000561128 MINDY4BA8MYZ0 360 aa15.18■□□□□ 0.02
CHRNA3-208ENST00000561128 ADCY3O60266 1144 aa15.18■□□□□ 0.02
CHRNA3-208ENST00000561128 PDE4AP27815 886 aa15.18■□□□□ 0.02
CHRNA3-208ENST00000561128 ERVK-9P63128 1117 aa15.18■□□□□ 0.02
CHRNA3-208ENST00000561128 ERVK-24P63145 666 aa15.18■□□□□ 0.02
CHRNA3-208ENST00000561128 NUCB1Q02818 461 aa15.18■□□□□ 0.02
CHRNA3-208ENST00000561128 ZNF589Q86UQ0 364 aaPredicted RBP15.18■□□□□ 0.02
CHRNA3-208ENST00000561128 PLEKHM2Q8IWE5 1019 aa15.18■□□□□ 0.02
CHRNA3-208ENST00000561128 IFNL3Q8IZI9 196 aa15.18■□□□□ 0.02
CHRNA3-208ENST00000561128 UNC93B1Q9H1C4 597 aa15.18■□□□□ 0.02
CHRNA3-208ENST00000561128 INCENPQ9NQS7 918 aa15.18■□□□□ 0.02
CHRNA3-208ENST00000561128 TAOK2Q9UL54 1235 aa15.18■□□□□ 0.02
CHRNA3-208ENST00000561128 COL11A1P12107 1806 aaPredicted RBP15.17■□□□□ 0.02
CHRNA3-208ENST00000561128 USP17L15C9J2P7 530 aa15.17■□□□□ 0.02
CHRNA3-208ENST00000561128 USP17L13C9JLJ4 530 aa15.17■□□□□ 0.02
CHRNA3-208ENST00000561128 USP17L11C9JVI0 530 aa15.17■□□□□ 0.02
CHRNA3-208ENST00000561128 USP17L18D6R9N7 530 aa15.17■□□□□ 0.02
CHRNA3-208ENST00000561128 USP17L22D6RA61 530 aa15.17■□□□□ 0.02
CHRNA3-208ENST00000561128 USP17L17D6RBQ6 530 aa15.17■□□□□ 0.02
CHRNA3-208ENST00000561128 USP17L19D6RCP7 530 aa15.17■□□□□ 0.02
CHRNA3-208ENST00000561128 USP17L20D6RJB6 530 aa15.17■□□□□ 0.02
CHRNA3-208ENST00000561128 INHAP05111 366 aa15.17■□□□□ 0.02
CHRNA3-208ENST00000561128 CCL5P13501 91 aa15.17■□□□□ 0.02
CHRNA3-208ENST00000561128 EEF2P13639 858 aaKnown RBP15.17■□□□□ 0.02
CHRNA3-208ENST00000561128 TDO2P48775 406 aa15.17■□□□□ 0.02
CHRNA3-208ENST00000561128 USP17L24Q0WX57 530 aa15.17■□□□□ 0.02
CHRNA3-208ENST00000561128 CHD1LQ86WJ1 897 aa15.17■□□□□ 0.02
CHRNA3-208ENST00000561128 NKX2-3Q8TAU0 364 aa15.17■□□□□ 0.02
CHRNA3-208ENST00000561128 TMX2Q9Y320 296 aa15.17■□□□□ 0.02
CHRNA3-208ENST00000561128 KIAA0100Q14667 2235 aaKnown RBP15.17■□□□□ 0.02
CHRNA3-208ENST00000561128 IGKV6D-41A0A0C4DH26 115 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms