RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 USP17L15C9J2P7 530 aa12.34□□□□□ -0.43
LDLR-214ENST00000560628 USP17L13C9JLJ4 530 aa12.34□□□□□ -0.43
LDLR-214ENST00000560628 USP17L11C9JVI0 530 aa12.34□□□□□ -0.43
LDLR-214ENST00000560628 USP17L18D6R9N7 530 aa12.34□□□□□ -0.43
LDLR-214ENST00000560628 USP17L22D6RA61 530 aa12.34□□□□□ -0.43
LDLR-214ENST00000560628 USP17L17D6RBQ6 530 aa12.34□□□□□ -0.43
LDLR-214ENST00000560628 USP17L19D6RCP7 530 aa12.34□□□□□ -0.43
LDLR-214ENST00000560628 USP17L20D6RJB6 530 aa12.34□□□□□ -0.43
LDLR-214ENST00000560628 SMIM22K7EJ46 135 aa12.34□□□□□ -0.43
LDLR-214ENST00000560628 CYP2B6P20813 491 aa12.34□□□□□ -0.43
LDLR-214ENST00000560628 USP17L24Q0WX57 530 aa12.34□□□□□ -0.43
LDLR-214ENST00000560628 TRIM32Q13049 653 aa12.34□□□□□ -0.43
LDLR-214ENST00000560628 CCAR1Q8IX12 1150 aaKnown RBP12.34□□□□□ -0.43
LDLR-214ENST00000560628 KIAA1683Q9H0B3 1180 aa12.34□□□□□ -0.43
LDLR-214ENST00000560628 DCTPP1Q9H773 170 aa12.34□□□□□ -0.43
LDLR-214ENST00000560628 FOCADQ5VW36 1801 aa12.34□□□□□ -0.43
LDLR-214ENST00000560628 MKI67P46013 3256 aaKnown RBP12.33□□□□□ -0.44
LDLR-214ENST00000560628 LOC285556D6RIA3 1793 aa12.33□□□□□ -0.44
LDLR-214ENST00000560628 H0YGN5 161 aa12.33□□□□□ -0.44
LDLR-214ENST00000560628 USP14P54578 494 aa12.33□□□□□ -0.44
LDLR-214ENST00000560628 ERVK-9P63128 1117 aa12.33□□□□□ -0.44
LDLR-214ENST00000560628 ERVK-24P63145 666 aa12.33□□□□□ -0.44
LDLR-214ENST00000560628 TSHZ3Q63HK5 1081 aa12.33□□□□□ -0.44
LDLR-214ENST00000560628 CATSPERGQ6ZRH7 1159 aa12.33□□□□□ -0.44
LDLR-214ENST00000560628 C12orf42Q96LP6 360 aa12.33□□□□□ -0.44
LDLR-214ENST00000560628 PORCNQ9H237 461 aa12.33□□□□□ -0.44
LDLR-214ENST00000560628 ECHDC1Q9NTX5 307 aa12.33□□□□□ -0.44
LDLR-214ENST00000560628 SLC4A4Q9Y6R1 1079 aa12.33□□□□□ -0.44
LDLR-214ENST00000560628 A0A1W2PRG0 241 aa12.32□□□□□ -0.44
LDLR-214ENST00000560628 USP17L12C9JPN9 530 aa12.32□□□□□ -0.44
LDLR-214ENST00000560628 USP17L21D6R901 530 aa12.32□□□□□ -0.44
LDLR-214ENST00000560628 FARP2O94887 1054 aaPredicted RBP12.32□□□□□ -0.44
LDLR-214ENST00000560628 VCAM1P19320 739 aa12.32□□□□□ -0.44
LDLR-214ENST00000560628 MAPK4P31152 587 aa12.32□□□□□ -0.44
LDLR-214ENST00000560628 UBE3CQ15386 1083 aa12.32□□□□□ -0.44
LDLR-214ENST00000560628 UBE2Q1Q7Z7E8 422 aa12.32□□□□□ -0.44
LDLR-214ENST00000560628 GCC1Q96CN9 775 aa12.32□□□□□ -0.44
LDLR-214ENST00000560628 NUDT12Q9BQG2 462 aa12.32□□□□□ -0.44
LDLR-214ENST00000560628 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.32□□□□□ -0.442e-7■□□□□ 8.8
LDLR-214ENST00000560628 PUS7LQ9H0K6 701 aaKnown RBP12.32□□□□□ -0.44
LDLR-214ENST00000560628 RPAP3Q9H6T3 665 aaPredicted RBP12.32□□□□□ -0.44
LDLR-214ENST00000560628 ATP8A2Q9NTI2 1148 aa12.32□□□□□ -0.44
LDLR-214ENST00000560628 PCDHB15Q9Y5E8 787 aa12.32□□□□□ -0.44
LDLR-214ENST00000560628 BRCA2P51587 3418 aa12.31□□□□□ -0.44
LDLR-214ENST00000560628 CNMDO75829 334 aa12.31□□□□□ -0.44
LDLR-214ENST00000560628 HMGCRP04035 888 aa12.31□□□□□ -0.44
LDLR-214ENST00000560628 AKR1B1P15121 316 aa12.31□□□□□ -0.44
LDLR-214ENST00000560628 CDK8P49336 464 aa12.31□□□□□ -0.44
LDLR-214ENST00000560628 HABP4Q5JVS0 413 aaKnown RBP12.31□□□□□ -0.44
LDLR-214ENST00000560628 C12orf60Q5U649 245 aa12.31□□□□□ -0.44
LDLR-214ENST00000560628 ZSCAN25Q6NSZ9 544 aa12.31□□□□□ -0.44
LDLR-214ENST00000560628 GPR142Q7Z601 462 aa12.31□□□□□ -0.44
LDLR-214ENST00000560628 PLEKHH3Q7Z736 793 aa12.31□□□□□ -0.44
LDLR-214ENST00000560628 CLEC10AQ8IUN9 316 aa12.31□□□□□ -0.44
LDLR-214ENST00000560628 GTF3C2Q8WUA4 911 aaPredicted RBP12.31□□□□□ -0.44
LDLR-214ENST00000560628 TRIB2Q92519 343 aa12.31□□□□□ -0.44
LDLR-214ENST00000560628 CWC22Q9HCG8 908 aaKnown RBP12.31□□□□□ -0.44
LDLR-214ENST00000560628 PAK6Q9NQU5 681 aaPredicted RBP12.31□□□□□ -0.44
LDLR-214ENST00000560628 SWAP70Q9UH65 585 aa12.31□□□□□ -0.44
LDLR-214ENST00000560628 RABGAP1Q9Y3P9 1069 aa12.31□□□□□ -0.44
LDLR-214ENST00000560628 CCL14Q16627 93 aa12.3□□□□□ -0.44
LDLR-214ENST00000560628 KIAA1755Q5JYT7 1200 aa12.3□□□□□ -0.44
LDLR-214ENST00000560628 WDR78Q5VTH9 848 aa12.3□□□□□ -0.44
LDLR-214ENST00000560628 CTR9Q6PD62 1173 aa12.3□□□□□ -0.44
LDLR-214ENST00000560628 TMEM179Q6ZVK1 233 aa12.3□□□□□ -0.44
LDLR-214ENST00000560628 SIAH1Q8IUQ4 282 aa12.3□□□□□ -0.44
LDLR-214ENST00000560628 AMOTL1Q8IY63 956 aa12.3□□□□□ -0.44
LDLR-214ENST00000560628 STK11IPQ8N1F8 1099 aa12.3□□□□□ -0.44
LDLR-214ENST00000560628 DDRGK1Q96HY6 314 aa12.3□□□□□ -0.44
LDLR-214ENST00000560628 GPATCH3Q96I76 525 aa12.3□□□□□ -0.44
LDLR-214ENST00000560628 CRISPLD2Q9H0B8 497 aa12.3□□□□□ -0.44
LDLR-214ENST00000560628 HMX1Q9NP08 348 aaPredicted RBP12.3□□□□□ -0.44
LDLR-214ENST00000560628 BTBD7Q9P203 1132 aa12.3□□□□□ -0.44
LDLR-214ENST00000560628 COLQQ9Y215 455 aaPredicted RBP12.3□□□□□ -0.44
LDLR-214ENST00000560628 SPDYE16A6NNV3 312 aaPredicted RBP12.29□□□□□ -0.44
LDLR-214ENST00000560628 ATP2B2Q01814 1243 aa12.29□□□□□ -0.44
LDLR-214ENST00000560628 COG2Q14746 738 aa12.29□□□□□ -0.44
LDLR-214ENST00000560628 MORN1Q5T089 497 aa12.29□□□□□ -0.44
LDLR-214ENST00000560628 SAMD1Q6SPF0 538 aaPredicted RBP12.29□□□□□ -0.44
LDLR-214ENST00000560628 KBTBD3Q8NAB2 608 aa12.29□□□□□ -0.44
LDLR-214ENST00000560628 SOCS4Q8WXH5 440 aa12.29□□□□□ -0.44
LDLR-214ENST00000560628 USP6NLQ92738 828 aa12.29□□□□□ -0.44
LDLR-214ENST00000560628 OSBP2Q969R2 916 aa12.29□□□□□ -0.44
LDLR-214ENST00000560628 PAWRQ96IZ0 340 aaKnown RBP12.29□□□□□ -0.44
LDLR-214ENST00000560628 STRBPQ96SI9 672 aaKnown RBP12.29□□□□□ -0.44
LDLR-214ENST00000560628 HTATIP2Q9BUP3 242 aa12.29□□□□□ -0.44
LDLR-214ENST00000560628 TANGO6Q9C0B7 1094 aa12.29□□□□□ -0.44
LDLR-214ENST00000560628 RPTORQ8N122 1335 aa12.29□□□□□ -0.44
LDLR-214ENST00000560628 RNF113AO15541 343 aaKnown RBP12.28□□□□□ -0.44
LDLR-214ENST00000560628 XRCC5P13010 732 aaKnown RBP12.28□□□□□ -0.44
LDLR-214ENST00000560628 PRKAR2AP13861 404 aaKnown RBP12.28□□□□□ -0.44
LDLR-214ENST00000560628 ZKSCAN1P17029 563 aaPredicted RBP12.28□□□□□ -0.44
LDLR-214ENST00000560628 RGS2P41220 211 aa12.28□□□□□ -0.44
LDLR-214ENST00000560628 CCNA1P78396 465 aa12.28□□□□□ -0.44
LDLR-214ENST00000560628 CACNB2Q08289 660 aaPredicted RBP12.28□□□□□ -0.44
LDLR-214ENST00000560628 C16orf86Q6ZW13 317 aa12.28□□□□□ -0.44
LDLR-214ENST00000560628 SPICE1Q8N0Z3 855 aa12.28□□□□□ -0.44
LDLR-214ENST00000560628 OTUD7AQ8TE49 926 aaPredicted RBP12.28□□□□□ -0.44
LDLR-214ENST00000560628 DIS3LQ8TF46 1054 aaKnown RBP12.28□□□□□ -0.44
LDLR-214ENST00000560628 CCDC17Q96LX7 622 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms