RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 COL9A3Q14050 684 aaPredicted RBP25.78■■□□□ 1.72
SNX1-210ENST00000560260 RASEFQ8IZ41 740 aa25.78■■□□□ 1.72
SNX1-210ENST00000560260 ZNF280CQ8ND82 737 aa25.78■■□□□ 1.72
SNX1-210ENST00000560260 A0A1W2PRG0 241 aa25.77■■□□□ 1.72
SNX1-210ENST00000560260 TSPY2A6NKD2 308 aa25.77■■□□□ 1.72
SNX1-210ENST00000560260 NMT2O60551 498 aa25.77■■□□□ 1.72
SNX1-210ENST00000560260 TSPY3P0CV98 308 aa25.77■■□□□ 1.72
SNX1-210ENST00000560260 TSPY8P0CW00 308 aa25.77■■□□□ 1.72
SNX1-210ENST00000560260 ICA1Q05084 483 aa25.77■■□□□ 1.72
SNX1-210ENST00000560260 BRI3BPQ8WY22 251 aa25.77■■□□□ 1.72
SNX1-210ENST00000560260 USP26Q9BXU7 913 aa25.77■■□□□ 1.72
SNX1-210ENST00000560260 IL17RBQ9NRM6 502 aa25.77■■□□□ 1.72
SNX1-210ENST00000560260 A0A0G2JLL6 359 aaPredicted RBP25.76■■□□□ 1.71
SNX1-210ENST00000560260 CXCL11O14625 94 aa25.76■■□□□ 1.71
SNX1-210ENST00000560260 HSPA4P34932 840 aa25.76■■□□□ 1.71
SNX1-210ENST00000560260 PRRT2Q7Z6L0 340 aaPredicted RBP25.76■■□□□ 1.71
SNX1-210ENST00000560260 CEP95Q96GE4 821 aa25.76■■□□□ 1.71
SNX1-210ENST00000560260 TBC1D2Q9BYX2 928 aa25.76■■□□□ 1.71
SNX1-210ENST00000560260 AS3MTQ9HBK9 375 aa25.76■■□□□ 1.71
SNX1-210ENST00000560260 PCNTO95613 3336 aa25.76■■□□□ 1.71
SNX1-210ENST00000560260 KDM4AO75164 1064 aa25.75■■□□□ 1.71
SNX1-210ENST00000560260 SNAPC2Q13487 334 aa25.75■■□□□ 1.71
SNX1-210ENST00000560260 MTMR2Q13614 643 aa25.75■■□□□ 1.71
SNX1-210ENST00000560260 KCNB2Q92953 911 aa25.75■■□□□ 1.71
SNX1-210ENST00000560260 CCL15-CCL14A0A0B4J2E2 113 aa25.74■■□□□ 1.71
SNX1-210ENST00000560260 TESPA1A2RU30 521 aaPredicted RBP25.74■■□□□ 1.71
SNX1-210ENST00000560260 MANSC4A6NHS7 340 aaPredicted RBP25.74■■□□□ 1.71
SNX1-210ENST00000560260 EPB41L2O43491 1005 aaKnown RBP25.74■■□□□ 1.71
SNX1-210ENST00000560260 EEF2P13639 858 aaKnown RBP25.74■■□□□ 1.71
SNX1-210ENST00000560260 MAP2K2P36507 400 aa25.74■■□□□ 1.71
SNX1-210ENST00000560260 GTF2A2P52657 109 aa25.74■■□□□ 1.71
SNX1-210ENST00000560260 CCL15Q16663 113 aa25.74■■□□□ 1.71
SNX1-210ENST00000560260 CYB5R4Q7L1T6 521 aa25.74■■□□□ 1.71
SNX1-210ENST00000560260 ESR2Q92731 530 aa25.74■■□□□ 1.71
SNX1-210ENST00000560260 PTPN18Q99952 460 aa25.74■■□□□ 1.71
SNX1-210ENST00000560260 KANSL2Q9H9L4 492 aa25.74■■□□□ 1.71
SNX1-210ENST00000560260 MTMR4Q9NYA4 1195 aa25.74■■□□□ 1.71
SNX1-210ENST00000560260 IGF2BP3O00425 579 aaKnown RBP eCLIP25.73■■□□□ 1.71
SNX1-210ENST00000560260 HMGCS2P54868 508 aa25.73■■□□□ 1.71
SNX1-210ENST00000560260 BACE1P56817 501 aa25.73■■□□□ 1.71
SNX1-210ENST00000560260 MB21D2Q8IYB1 491 aaPredicted RBP25.73■■□□□ 1.71
SNX1-210ENST00000560260 KRT23Q9C075 422 aa25.73■■□□□ 1.71
SNX1-210ENST00000560260 CNNM2Q9H8M5 875 aa25.73■■□□□ 1.71
SNX1-210ENST00000560260 MYH4Q9Y623 1939 aa25.73■■□□□ 1.71
SNX1-210ENST00000560260 USP17L10C9JJH3 530 aa25.72■■□□□ 1.71
SNX1-210ENST00000560260 NOVP48745 357 aa25.72■■□□□ 1.71
SNX1-210ENST00000560260 ZYXQ15942 572 aaKnown RBP25.72■■□□□ 1.71
SNX1-210ENST00000560260 SH3D19Q5HYK7 790 aa25.72■■□□□ 1.71
SNX1-210ENST00000560260 ZKSCAN3Q9BRR0 538 aa25.72■■□□□ 1.71
SNX1-210ENST00000560260 ZSWIM5Q9P217 1185 aa25.72■■□□□ 1.71
SNX1-210ENST00000560260 SNX14Q9Y5W7 946 aa25.72■■□□□ 1.71
SNX1-210ENST00000560260 CETPP11597 493 aa25.71■■□□□ 1.71
SNX1-210ENST00000560260 ATP2B2Q01814 1243 aa25.71■■□□□ 1.71
SNX1-210ENST00000560260 ADCK5Q3MIX3 580 aa25.71■■□□□ 1.71
SNX1-210ENST00000560260 KIAA1755Q5JYT7 1200 aa25.71■■□□□ 1.71
SNX1-210ENST00000560260 RNF20Q5VTR2 975 aa25.71■■□□□ 1.71
SNX1-210ENST00000560260 GPAT2Q6NUI2 795 aa25.71■■□□□ 1.71
SNX1-210ENST00000560260 FEZ1Q99689 392 aa25.71■■□□□ 1.71
SNX1-210ENST00000560260 KIAA1683Q9H0B3 1180 aa25.71■■□□□ 1.71
SNX1-210ENST00000560260 EMILIN3Q9NT22 766 aa25.71■■□□□ 1.71
SNX1-210ENST00000560260 TCP11L1Q9NUJ3 509 aa25.71■■□□□ 1.71
SNX1-210ENST00000560260 NYAP2Q9P242 653 aa25.71■■□□□ 1.71
SNX1-210ENST00000560260 TM4SF4P48230 202 aa25.7■■□□□ 1.71
SNX1-210ENST00000560260 ANTXR2P58335 489 aa25.7■■□□□ 1.71
SNX1-210ENST00000560260 TSGA10IPQ3SY00 556 aa25.7■■□□□ 1.71
SNX1-210ENST00000560260 NCOA7Q8NI08 942 aa25.7■■□□□ 1.71
SNX1-210ENST00000560260 ARHGEF10LQ9HCE6 1279 aa25.7■■□□□ 1.71
SNX1-210ENST00000560260 TMX2Q9Y320 296 aa25.7■■□□□ 1.71
SNX1-210ENST00000560260 BTBD19C9JJ37 291 aa25.69■■□□□ 1.7
SNX1-210ENST00000560260 SREBF2Q12772 1141 aa25.69■■□□□ 1.7
SNX1-210ENST00000560260 TREML2Q5T2D2 321 aa25.69■■□□□ 1.7
SNX1-210ENST00000560260 RCSD1Q6JBY9 416 aa25.69■■□□□ 1.7
SNX1-210ENST00000560260 GADL1Q6ZQY3 521 aa25.69■■□□□ 1.7
SNX1-210ENST00000560260 LRRC47Q8N1G4 583 aaKnown RBP25.69■■□□□ 1.7
SNX1-210ENST00000560260 FAM43AQ8N2R8 423 aa25.69■■□□□ 1.7
SNX1-210ENST00000560260 JMYQ8N9B5 988 aa25.69■■□□□ 1.7
SNX1-210ENST00000560260 CLIP2Q9UDT6 1046 aa25.69■■□□□ 1.7
SNX1-210ENST00000560260 NT5C2P49902 561 aa25.68■■□□□ 1.7
SNX1-210ENST00000560260 TRDNQ13061 729 aa25.68■■□□□ 1.7
SNX1-210ENST00000560260 RALYLQ86SE5 291 aaKnown RBP25.68■■□□□ 1.7
SNX1-210ENST00000560260 IFNL1Q8IU54 200 aa25.68■■□□□ 1.7
SNX1-210ENST00000560260 C12orf42Q96LP6 360 aa25.68■■□□□ 1.7
SNX1-210ENST00000560260 C19orf81C9J6K1 198 aa25.67■■□□□ 1.7
SNX1-210ENST00000560260 TTLL1O95922 423 aa25.67■■□□□ 1.7
SNX1-210ENST00000560260 USP17L2Q6R6M4 530 aa25.67■■□□□ 1.7
SNX1-210ENST00000560260 CHST3Q7LGC8 479 aa25.67■■□□□ 1.7
SNX1-210ENST00000560260 PROCA1Q8NCQ7 364 aaPredicted RBP25.67■■□□□ 1.7
SNX1-210ENST00000560260 ZKSCAN1P17029 563 aaPredicted RBP25.66■■□□□ 1.7
SNX1-210ENST00000560260 MKL1Q969V6 931 aa25.66■■□□□ 1.7
SNX1-210ENST00000560260 ZSCAN10Q96SZ4 725 aaPredicted RBP25.66■■□□□ 1.7
SNX1-210ENST00000560260 VCPKMTQ9H867 229 aa25.66■■□□□ 1.7
SNX1-210ENST00000560260 STX8Q9UNK0 236 aa25.66■■□□□ 1.7
SNX1-210ENST00000560260 TNKSO95271 1327 aa25.66■■□□□ 1.7
SNX1-210ENST00000560260 USP14P54578 494 aa25.65■■□□□ 1.7
SNX1-210ENST00000560260 INHBEP58166 350 aa25.65■■□□□ 1.7
SNX1-210ENST00000560260 FASTKD5Q7L8L6 764 aaKnown RBP25.65■■□□□ 1.7
SNX1-210ENST00000560260 RASGRP2Q7LDG7 609 aa25.65■■□□□ 1.7
SNX1-210ENST00000560260 ANKRD23Q86SG2 305 aa25.65■■□□□ 1.7
SNX1-210ENST00000560260 ENAHQ8N8S7 591 aaPredicted RBP25.65■■□□□ 1.7
SNX1-210ENST00000560260 SH2D4AQ9H788 454 aa25.65■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms