RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 PTGIRP43119 386 aa6.33□□□□□ -1.4
SPG11-220ENST00000559933 CTSOP43234 321 aaPredicted RBP6.33□□□□□ -1.4
SPG11-220ENST00000559933 PTSQ03393 145 aa6.33□□□□□ -1.4
SPG11-220ENST00000559933 BMP2KLQ5H9B9 411 aa6.33□□□□□ -1.4
SPG11-220ENST00000559933 CCDC158Q5M9N0 1113 aa6.33□□□□□ -1.4
SPG11-220ENST00000559933 CCDC129Q6ZRS4 1044 aa6.33□□□□□ -1.4
SPG11-220ENST00000559933 TMC4Q7Z404 712 aa6.33□□□□□ -1.4
SPG11-220ENST00000559933 VPS37DQ86XT2 251 aa6.33□□□□□ -1.4
SPG11-220ENST00000559933 SPATA5Q8NB90 893 aa6.33□□□□□ -1.4
SPG11-220ENST00000559933 FAM227BQ96M60 508 aa6.33□□□□□ -1.4
SPG11-220ENST00000559933 HAUS7Q99871 368 aa6.33□□□□□ -1.4
SPG11-220ENST00000559933 FSD1Q9BTV5 496 aa6.33□□□□□ -1.4
SPG11-220ENST00000559933 RTFDC1Q9BY42 306 aaPredicted RBP6.33□□□□□ -1.4
SPG11-220ENST00000559933 CD209Q9NNX6 404 aa6.33□□□□□ -1.4
SPG11-220ENST00000559933 PAG1Q9NWQ8 432 aa6.33□□□□□ -1.4
SPG11-220ENST00000559933 MAST2Q6P0Q8 1798 aa6.33□□□□□ -1.4
SPG11-220ENST00000559933 TIAM2Q8IVF5 1701 aa6.33□□□□□ -1.4
SPG11-220ENST00000559933 A0A0D9SFI3 127 aa6.32□□□□□ -1.4
SPG11-220ENST00000559933 ERC2O15083 957 aa6.32□□□□□ -1.4
SPG11-220ENST00000559933 LILRA1O75019 489 aa6.32□□□□□ -1.4
SPG11-220ENST00000559933 FRAT2O75474 233 aaPredicted RBP6.32□□□□□ -1.4
SPG11-220ENST00000559933 PRDX5P30044 214 aa6.32□□□□□ -1.4
SPG11-220ENST00000559933 GTF2IP78347 998 aa6.32□□□□□ -1.4
SPG11-220ENST00000559933 NMIQ13287 307 aaPredicted RBP6.32□□□□□ -1.4
SPG11-220ENST00000559933 CAVIN4Q5BKX8 364 aa6.32□□□□□ -1.4
SPG11-220ENST00000559933 C15orf52Q6ZUT6 534 aaKnown RBP6.32□□□□□ -1.4
SPG11-220ENST00000559933 ZNF804AQ7Z570 1209 aa6.32□□□□□ -1.4
SPG11-220ENST00000559933 CERS5Q8N5B7 392 aa6.32□□□□□ -1.4
SPG11-220ENST00000559933 ZNF384Q8TF68 577 aa6.32□□□□□ -1.4
SPG11-220ENST00000559933 SEC62Q99442 399 aaKnown RBP6.32□□□□□ -1.4
SPG11-220ENST00000559933 ZC3H12CQ9C0D7 883 aaKnown RBP6.32□□□□□ -1.4
SPG11-220ENST00000559933 TAOK3Q9H2K8 898 aa6.32□□□□□ -1.4
SPG11-220ENST00000559933 ABCF2Q9UG63 623 aa6.32□□□□□ -1.4
SPG11-220ENST00000559933 PCDHB11Q9Y5F2 797 aa6.32□□□□□ -1.4
SPG11-220ENST00000559933 MYH7P12883 1935 aa6.32□□□□□ -1.4
SPG11-220ENST00000559933 CCDC88AQ3V6T2 1871 aa6.32□□□□□ -1.4
SPG11-220ENST00000559933 ZNF541Q9H0D2 1346 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 SHTN1A0MZ66 631 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 F8W031 263 aaPredicted RBP6.31□□□□□ -1.4
SPG11-220ENST00000559933 M0R2C6 588 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 IDH1O75874 414 aaKnown RBP6.31□□□□□ -1.4
SPG11-220ENST00000559933 RAD17O75943 681 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 UQCRFS1P1P0C7P4 283 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 VSIG8P0DPA2 414 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 IL1R1P14778 569 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 YY1P25490 414 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 CHMLP26374 656 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 ADD1P35611 737 aaKnown RBP6.31□□□□□ -1.4
SPG11-220ENST00000559933 IARSP41252 1262 aaKnown RBP6.31□□□□□ -1.4
SPG11-220ENST00000559933 MFAP1P55081 439 aaKnown RBP6.31□□□□□ -1.4
SPG11-220ENST00000559933 KIAA2012Q0VF49 1180 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 LCE2CQ5TA81 110 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 CC2D2BQ6DHV5 1058 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 CWC27Q6UX04 472 aaKnown RBP6.31□□□□□ -1.4
SPG11-220ENST00000559933 ARHGAP27Q6ZUM4 889 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 CYP2U1Q7Z449 544 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 ADGRA1Q86SQ6 560 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 ZNF589Q86UQ0 364 aaPredicted RBP6.31□□□□□ -1.4
SPG11-220ENST00000559933 RTKN2Q8IZC4 609 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 CNTROBQ8N137 903 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 LARGE2Q8N3Y3 721 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 CCDC155Q8N6L0 562 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 ZSCAN1Q8NBB4 408 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 TDRD7Q8NHU6 1098 aaKnown RBP6.31□□□□□ -1.4
SPG11-220ENST00000559933 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.31□□□□□ -1.4
SPG11-220ENST00000559933 PSMD1Q99460 953 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 TMX4Q9H1E5 349 aaPredicted RBP6.31□□□□□ -1.4
SPG11-220ENST00000559933 PCDHAC2Q9Y5I4 1007 aa6.31□□□□□ -1.4
SPG11-220ENST00000559933 SBF1O95248 1867 aa6.3□□□□□ -1.4
SPG11-220ENST00000559933 MAST3O60307 1309 aa6.3□□□□□ -1.4
SPG11-220ENST00000559933 PSME4Q14997 1843 aa6.3□□□□□ -1.4
SPG11-220ENST00000559933 MEN1O00255 615 aa6.3□□□□□ -1.4
SPG11-220ENST00000559933 CDC45O75419 566 aa6.3□□□□□ -1.4
SPG11-220ENST00000559933 MYCP01106 439 aaPredicted RBP6.3□□□□□ -1.4
SPG11-220ENST00000559933 PDE6AP16499 860 aa6.3□□□□□ -1.4
SPG11-220ENST00000559933 SCNN1DP51172 638 aa6.3□□□□□ -1.4
SPG11-220ENST00000559933 LYSMD3Q7Z3D4 306 aa6.3□□□□□ -1.4
SPG11-220ENST00000559933 MAGEB6Q8N7X4 407 aa6.3□□□□□ -1.4
SPG11-220ENST00000559933 KBTBD3Q8NAB2 608 aa6.3□□□□□ -1.4
SPG11-220ENST00000559933 MIGA1Q8NAN2 632 aa6.3□□□□□ -1.4
SPG11-220ENST00000559933 RNF217Q8TC41 542 aa6.3□□□□□ -1.4
SPG11-220ENST00000559933 EVI5LQ96CN4 794 aa6.3□□□□□ -1.4
SPG11-220ENST00000559933 ZNF512BQ96KM6 892 aaPredicted RBP6.3□□□□□ -1.4
SPG11-220ENST00000559933 EYA3Q99504 573 aa6.3□□□□□ -1.4
SPG11-220ENST00000559933 COA1Q9GZY4 146 aa6.3□□□□□ -1.4
SPG11-220ENST00000559933 RAI14Q9P0K7 980 aa6.3□□□□□ -1.4
SPG11-220ENST00000559933 DENND2AQ9ULE3 1009 aa6.3□□□□□ -1.4
SPG11-220ENST00000559933 ZNF532Q9HCE3 1301 aa6.29□□□□□ -1.4
SPG11-220ENST00000559933 TCRBV5S4A2TA0A5A2 114 aa6.29□□□□□ -1.4
SPG11-220ENST00000559933 PSMD14O00487 310 aa6.29□□□□□ -1.4
SPG11-220ENST00000559933 ADD2P35612 726 aa6.29□□□□□ -1.4
SPG11-220ENST00000559933 ERVK-9P63128 1117 aa6.29□□□□□ -1.4
SPG11-220ENST00000559933 DYNLL1P63167 89 aaKnown RBP6.29□□□□□ -1.4
SPG11-220ENST00000559933 MECOMQ03112 1051 aa6.29□□□□□ -1.4
SPG11-220ENST00000559933 GPR162Q16538 588 aa6.29□□□□□ -1.4
SPG11-220ENST00000559933 MFSD14BQ5SR56 506 aa6.29□□□□□ -1.4
SPG11-220ENST00000559933 DACT2Q5SW24 774 aa6.29□□□□□ -1.4
SPG11-220ENST00000559933 SLC9C2Q5TAH2 1124 aa6.29□□□□□ -1.4
SPG11-220ENST00000559933 VPS53Q5VIR6 699 aa6.29□□□□□ -1.4
SPG11-220ENST00000559933 NIM1KQ8IY84 436 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms