RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 GGA1Q9UJY5 639 aa12.72□□□□□ -0.37
SPG11-217ENST00000559511 FBXO2Q9UK22 296 aaPredicted RBP12.72□□□□□ -0.37
SPG11-217ENST00000559511 KCNH3Q9ULD8 1083 aa12.72□□□□□ -0.37
SPG11-217ENST00000559511 FAM205CA6NFA0 338 aa12.71□□□□□ -0.37
SPG11-217ENST00000559511 GRIK5Q16478 980 aa12.71□□□□□ -0.37
SPG11-217ENST00000559511 SLC4A8Q2Y0W8 1093 aa12.71□□□□□ -0.37
SPG11-217ENST00000559511 LONRF3Q496Y0 759 aa12.71□□□□□ -0.37
SPG11-217ENST00000559511 METTL16Q86W50 562 aaKnown RBP12.71□□□□□ -0.37
SPG11-217ENST00000559511 CABP5Q9NP86 173 aa12.71□□□□□ -0.37
SPG11-217ENST00000559511 PODXL2Q9NZ53 605 aa12.71□□□□□ -0.37
SPG11-217ENST00000559511 ARPP21Q9UBL0 812 aaPredicted RBP12.71□□□□□ -0.37
SPG11-217ENST00000559511 PRPF3O43395 683 aaKnown RBP12.71□□□□□ -0.38
SPG11-217ENST00000559511 DDAH1O94760 285 aa12.71□□□□□ -0.38
SPG11-217ENST00000559511 LDHBP07195 334 aaKnown RBP12.71□□□□□ -0.38
SPG11-217ENST00000559511 USP17L8P0C7I0 530 aa12.71□□□□□ -0.38
SPG11-217ENST00000559511 AKAP17AQ02040 695 aaKnown RBP12.71□□□□□ -0.38
SPG11-217ENST00000559511 ARID5BQ14865 1188 aa12.71□□□□□ -0.38
SPG11-217ENST00000559511 NCAPHQ15003 741 aa12.71□□□□□ -0.38
SPG11-217ENST00000559511 SBK1Q52WX2 424 aa12.71□□□□□ -0.38
SPG11-217ENST00000559511 PHF20Q9BVI0 1012 aa12.71□□□□□ -0.38
SPG11-217ENST00000559511 CD209Q9NNX6 404 aa12.71□□□□□ -0.38
SPG11-217ENST00000559511 RBM28Q9NW13 759 aaKnown RBP12.71□□□□□ -0.38
SPG11-217ENST00000559511 POLLQ9UGP5 575 aa12.71□□□□□ -0.38
SPG11-217ENST00000559511 V9GY48 417 aaPredicted RBP12.71□□□□□ -0.38
SPG11-217ENST00000559511 CALM1P0DP23 149 aa12.7□□□□□ -0.38
SPG11-217ENST00000559511 CALM2P0DP24 149 aa12.7□□□□□ -0.38
SPG11-217ENST00000559511 CALM3P0DP25 149 aa12.7□□□□□ -0.38
SPG11-217ENST00000559511 ATP2B1P20020 1258 aa12.7□□□□□ -0.38
SPG11-217ENST00000559511 PTPREP23469 700 aa12.7□□□□□ -0.38
SPG11-217ENST00000559511 EARS2Q5JPH6 523 aaKnown RBP12.7□□□□□ -0.38
SPG11-217ENST00000559511 KRBA2Q6ZNG9 492 aa12.7□□□□□ -0.38
SPG11-217ENST00000559511 TMTC3Q6ZXV5 915 aa12.7□□□□□ -0.38
SPG11-217ENST00000559511 TBC1D16Q8TBP0 767 aa12.7□□□□□ -0.38
SPG11-217ENST00000559511 CNTNAP5Q8WYK1 1306 aa12.7□□□□□ -0.38
SPG11-217ENST00000559511 FOCADQ5VW36 1801 aa12.7□□□□□ -0.38
SPG11-217ENST00000559511 MYH1P12882 1939 aa12.7□□□□□ -0.38
SPG11-217ENST00000559511 PPEF1O14829 653 aaPredicted RBP12.7□□□□□ -0.38
SPG11-217ENST00000559511 FOXN1O15353 648 aa12.7□□□□□ -0.38
SPG11-217ENST00000559511 IGSF3O75054 1194 aa12.7□□□□□ -0.38
SPG11-217ENST00000559511 IL1R1P14778 569 aa12.7□□□□□ -0.38
SPG11-217ENST00000559511 FOXP4Q8IVH2 680 aaPredicted RBP12.7□□□□□ -0.38
SPG11-217ENST00000559511 SRBD1Q8N5C6 995 aaKnown RBP12.7□□□□□ -0.38
SPG11-217ENST00000559511 CNNM3Q8NE01 707 aa12.7□□□□□ -0.38
SPG11-217ENST00000559511 FLAD1Q8NFF5 587 aa12.7□□□□□ -0.38
SPG11-217ENST00000559511 MCM9Q9NXL9 1143 aa12.7□□□□□ -0.38
SPG11-217ENST00000559511 MKRN1Q9UHC7 482 aaKnown RBP12.7□□□□□ -0.38
SPG11-217ENST00000559511 SRGNP10124 158 aa12.69□□□□□ -0.38
SPG11-217ENST00000559511 KRT2P35908 639 aa12.69□□□□□ -0.38
SPG11-217ENST00000559511 DIXDC1Q155Q3 683 aa12.69□□□□□ -0.38
SPG11-217ENST00000559511 RCSD1Q6JBY9 416 aa12.69□□□□□ -0.38
SPG11-217ENST00000559511 TMC4Q7Z404 712 aa12.69□□□□□ -0.38
SPG11-217ENST00000559511 LRRC8AQ8IWT6 810 aa12.69□□□□□ -0.38
SPG11-217ENST00000559511 SP8Q8IXZ3 490 aa12.69□□□□□ -0.38
SPG11-217ENST00000559511 SH3RF3Q8TEJ3 882 aaPredicted RBP12.69□□□□□ -0.38
SPG11-217ENST00000559511 TSPY2A6NKD2 308 aa12.68□□□□□ -0.38
SPG11-217ENST00000559511 MMP10P09238 476 aa12.68□□□□□ -0.38
SPG11-217ENST00000559511 XBP1P17861 261 aa12.68□□□□□ -0.38
SPG11-217ENST00000559511 MDM2Q00987 491 aaPredicted RBP12.68□□□□□ -0.38
SPG11-217ENST00000559511 PDE4BQ07343 736 aa12.68□□□□□ -0.38
SPG11-217ENST00000559511 NPY5RQ15761 445 aa12.68□□□□□ -0.38
SPG11-217ENST00000559511 HSD3B7Q9H2F3 369 aa12.68□□□□□ -0.38
SPG11-217ENST00000559511 QSER1Q2KHR3 1735 aa12.68□□□□□ -0.38
SPG11-217ENST00000559511 DDX60LQ5H9U9 1706 aaKnown RBP12.68□□□□□ -0.38
SPG11-217ENST00000559511 WNT7AO00755 349 aa12.68□□□□□ -0.38
SPG11-217ENST00000559511 GSTO1P78417 241 aa12.68□□□□□ -0.38
SPG11-217ENST00000559511 NOM1Q5C9Z4 860 aaKnown RBP12.68□□□□□ -0.38
SPG11-217ENST00000559511 C12orf60Q5U649 245 aa12.68□□□□□ -0.38
SPG11-217ENST00000559511 FILIP1Q7Z7B0 1213 aa12.68□□□□□ -0.38
SPG11-217ENST00000559511 CTCFLQ8NI51 663 aaPredicted RBP12.68□□□□□ -0.38
SPG11-217ENST00000559511 DYNLL2Q96FJ2 89 aa12.68□□□□□ -0.38
SPG11-217ENST00000559511 XPO4Q9C0E2 1151 aaKnown RBP12.68□□□□□ -0.38
SPG11-217ENST00000559511 RGS17Q9UGC6 210 aaPredicted RBP12.68□□□□□ -0.38
SPG11-217ENST00000559511 ATP6V0A2Q9Y487 856 aa12.68□□□□□ -0.38
SPG11-217ENST00000559511 PCDHA5Q9Y5H7 936 aa12.68□□□□□ -0.38
SPG11-217ENST00000559511 SRPRBQ9Y5M8 271 aaKnown RBP12.68□□□□□ -0.38
SPG11-217ENST00000559511 C6orf229H3BNL8 230 aa12.67□□□□□ -0.38
SPG11-217ENST00000559511 POLR2DO15514 142 aaKnown RBP12.67□□□□□ -0.38
SPG11-217ENST00000559511 NPR1P16066 1061 aa12.67□□□□□ -0.38
SPG11-217ENST00000559511 USP5P45974 858 aa12.67□□□□□ -0.38
SPG11-217ENST00000559511 USP49Q70CQ1 688 aa12.67□□□□□ -0.38
SPG11-217ENST00000559511 ZNF579Q8NAF0 562 aaKnown RBP12.67□□□□□ -0.38
SPG11-217ENST00000559511 MYRIPQ8NFW9 859 aa12.67□□□□□ -0.38
SPG11-217ENST00000559511 TNFRSF25Q93038 417 aa12.67□□□□□ -0.38
SPG11-217ENST00000559511 PRIMPOLQ96LW4 560 aa12.67□□□□□ -0.38
SPG11-217ENST00000559511 CSRNP2Q9H175 543 aa12.67□□□□□ -0.38
SPG11-217ENST00000559511 IL17RBQ9NRM6 502 aa12.67□□□□□ -0.38
SPG11-217ENST00000559511 FAM13BQ9NYF5 915 aa12.67□□□□□ -0.38
SPG11-217ENST00000559511 IFNKQ9P0W0 207 aa12.67□□□□□ -0.38
SPG11-217ENST00000559511 CEP131Q9UPN4 1083 aa12.67□□□□□ -0.38
SPG11-217ENST00000559511 PARP3Q9Y6F1 533 aa12.67□□□□□ -0.38
SPG11-217ENST00000559511 IKBKBO14920 756 aa12.67□□□□□ -0.38
SPG11-217ENST00000559511 BMP6P22004 513 aa12.67□□□□□ -0.38
SPG11-217ENST00000559511 LMOD1P29536 600 aaPredicted RBP12.67□□□□□ -0.38
SPG11-217ENST00000559511 PPP4CP60510 307 aa12.67□□□□□ -0.38
SPG11-217ENST00000559511 MSL1Q68DK7 614 aa12.67□□□□□ -0.38
SPG11-217ENST00000559511 ELOA2Q8IYF1 753 aaPredicted RBP12.67□□□□□ -0.38
SPG11-217ENST00000559511 SLX4Q8IY92 1834 aa12.66□□□□□ -0.38
SPG11-217ENST00000559511 TRIM75PA6NK02 468 aa12.66□□□□□ -0.38
SPG11-217ENST00000559511 SMTNL1A8MU46 457 aa12.66□□□□□ -0.38
SPG11-217ENST00000559511 SMC2O95347 1197 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms