RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 RNF112Q9ULX5 631 aa9.29□□□□□ -0.92
RTF1-204ENST00000558117 PCDHA4Q9UN74 947 aa9.29□□□□□ -0.92
RTF1-204ENST00000558117 PCDHGC5Q9Y5F6 944 aa9.29□□□□□ -0.92
RTF1-204ENST00000558117 DIP2AQ14689 1571 aa9.29□□□□□ -0.92
RTF1-204ENST00000558117 A2MP01023 1474 aa9.28□□□□□ -0.92
RTF1-204ENST00000558117 AHDC1Q5TGY3 1603 aaPredicted RBP9.28□□□□□ -0.92
RTF1-204ENST00000558117 LIG3P49916 1009 aa9.28□□□□□ -0.92
RTF1-204ENST00000558117 RPS26P62854 115 aaKnown RBP9.28□□□□□ -0.92
RTF1-204ENST00000558117 PTPN11Q06124 597 aaPredicted RBP9.28□□□□□ -0.92
RTF1-204ENST00000558117 TMEM87AQ8NBN3 555 aa9.28□□□□□ -0.92
RTF1-204ENST00000558117 SHKBP1Q8TBC3 707 aa9.28□□□□□ -0.92
RTF1-204ENST00000558117 ELMO3Q96BJ8 720 aa9.28□□□□□ -0.92
RTF1-204ENST00000558117 TBC1D32Q96NH3 1257 aa9.28□□□□□ -0.92
RTF1-204ENST00000558117 ATG3Q9NT62 314 aa9.28□□□□□ -0.92
RTF1-204ENST00000558117 KIAA1522Q9P206 1035 aaPredicted RBP9.28□□□□□ -0.92
RTF1-204ENST00000558117 TLR6Q9Y2C9 796 aa9.28□□□□□ -0.92
RTF1-204ENST00000558117 PCDHB5Q9Y5E4 795 aa9.28□□□□□ -0.92
RTF1-204ENST00000558117 SCAF11Q99590 1463 aaKnown RBP9.28□□□□□ -0.92
RTF1-204ENST00000558117 MSH6P52701 1360 aa9.27□□□□□ -0.93
RTF1-204ENST00000558117 TTLL4Q14679 1199 aa9.27□□□□□ -0.93
RTF1-204ENST00000558117 TSNAXIP1Q2TAA8 658 aa9.27□□□□□ -0.93
RTF1-204ENST00000558117 ZC3H12AQ5D1E8 599 aaKnown RBP9.27□□□□□ -0.93
RTF1-204ENST00000558117 DIEXFQ68CQ4 756 aaKnown RBP9.27□□□□□ -0.93
RTF1-204ENST00000558117 SSU72Q9NP77 194 aaKnown RBP9.27□□□□□ -0.93
RTF1-204ENST00000558117 DISC1Q9NRI5 854 aa9.27□□□□□ -0.93
RTF1-204ENST00000558117 PRKAG2Q9UGJ0 569 aa9.27□□□□□ -0.93
RTF1-204ENST00000558117 SAMD9LQ8IVG5 1584 aa9.27□□□□□ -0.93
RTF1-204ENST00000558117 PRDM15P57071 1507 aaPredicted RBP9.26□□□□□ -0.93
RTF1-204ENST00000558117 TIAM1Q13009 1591 aa9.26□□□□□ -0.93
RTF1-204ENST00000558117 WDR64B1ANS9 1081 aa9.26□□□□□ -0.93
RTF1-204ENST00000558117 RECKO95980 971 aa9.26□□□□□ -0.93
RTF1-204ENST00000558117 HCLS1P14317 486 aaPredicted RBP9.26□□□□□ -0.93
RTF1-204ENST00000558117 ERVK-24P63145 666 aa9.26□□□□□ -0.93
RTF1-204ENST00000558117 AGMOQ6ZNB7 445 aa9.26□□□□□ -0.93
RTF1-204ENST00000558117 ZDHHC13Q8IUH4 622 aa9.26□□□□□ -0.93
RTF1-204ENST00000558117 SMYD4Q8IYR2 804 aaPredicted RBP9.26□□□□□ -0.93
RTF1-204ENST00000558117 OSBPL1AQ9BXW6 950 aa9.26□□□□□ -0.93
RTF1-204ENST00000558117 KIF14Q15058 1648 aa9.26□□□□□ -0.93
RTF1-204ENST00000558117 SPAG9O60271 1321 aaKnown RBP9.26□□□□□ -0.93
RTF1-204ENST00000558117 DCDC2CA8MYV0 355 aa9.25□□□□□ -0.93
RTF1-204ENST00000558117 TFE3P19532 575 aaPredicted RBP9.25□□□□□ -0.93
RTF1-204ENST00000558117 GRIK1P39086 918 aa9.25□□□□□ -0.93
RTF1-204ENST00000558117 ZAR1Q86SH2 424 aa9.25□□□□□ -0.93
RTF1-204ENST00000558117 RNF214Q8ND24 703 aa9.25□□□□□ -0.93
RTF1-204ENST00000558117 METTL22Q9BUU2 404 aaPredicted RBP9.25□□□□□ -0.93
RTF1-204ENST00000558117 LGR6Q9HBX8 967 aa9.25□□□□□ -0.93
RTF1-204ENST00000558117 TRPC5Q9UL62 973 aaPredicted RBP9.25□□□□□ -0.93
RTF1-204ENST00000558117 CSADQ9Y600 493 aa9.25□□□□□ -0.93
RTF1-204ENST00000558117 PRXQ9BXM0 1461 aa9.25□□□□□ -0.93
RTF1-204ENST00000558117 ABCC3O15438 1527 aa9.25□□□□□ -0.93
RTF1-204ENST00000558117 UTRNP46939 3433 aa9.24□□□□□ -0.93
RTF1-204ENST00000558117 TGFB1P01137 390 aa9.24□□□□□ -0.93
RTF1-204ENST00000558117 VAMP1P23763 118 aa9.24□□□□□ -0.93
RTF1-204ENST00000558117 PHC3Q8NDX5 983 aa9.24□□□□□ -0.93
RTF1-204ENST00000558117 GAL3ST3Q96A11 431 aa9.24□□□□□ -0.93
RTF1-204ENST00000558117 MIR1-1HGQ9H1L0 117 aa9.24□□□□□ -0.93
RTF1-204ENST00000558117 COPRSQ9NQ92 184 aa9.24□□□□□ -0.93
RTF1-204ENST00000558117 PCOLCE2Q9UKZ9 415 aa9.24□□□□□ -0.93
RTF1-204ENST00000558117 F13BP05160 661 aa9.23□□□□□ -0.93
RTF1-204ENST00000558117 CYP27A1Q02318 531 aa9.23□□□□□ -0.93
RTF1-204ENST00000558117 LRP8Q14114 963 aa9.23□□□□□ -0.93
RTF1-204ENST00000558117 SEPT6Q14141 434 aa9.23□□□□□ -0.93
RTF1-204ENST00000558117 CPSF6Q16630 551 aaKnown RBP eCLIP9.23□□□□□ -0.93
RTF1-204ENST00000558117 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.23□□□□□ -0.93
RTF1-204ENST00000558117 RSRP1Q9BUV0 290 aa9.23□□□□□ -0.93
RTF1-204ENST00000558117 ATRNO75882 1429 aa9.22□□□□□ -0.93
RTF1-204ENST00000558117 NCOA2Q15596 1464 aa9.22□□□□□ -0.93
RTF1-204ENST00000558117 ARHGAP23Q9P227 1491 aa9.22□□□□□ -0.93
RTF1-204ENST00000558117 CDK8P49336 464 aa9.22□□□□□ -0.93
RTF1-204ENST00000558117 PPM1JQ5JR12 505 aa9.22□□□□□ -0.93
RTF1-204ENST00000558117 ERMP1Q7Z2K6 904 aa9.22□□□□□ -0.93
RTF1-204ENST00000558117 HDXQ7Z353 690 aa9.22□□□□□ -0.93
RTF1-204ENST00000558117 C12orf40Q86WS4 652 aa9.22□□□□□ -0.93
RTF1-204ENST00000558117 RELL1Q8IUW5 271 aa9.22□□□□□ -0.93
RTF1-204ENST00000558117 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.22□□□□□ -0.93
RTF1-204ENST00000558117 LEMD3Q9Y2U8 911 aa9.22□□□□□ -0.93
RTF1-204ENST00000558117 CDC42BPBQ9Y5S2 1711 aa9.22□□□□□ -0.93
RTF1-204ENST00000558117 RTEL1-TNFRSF6BF6WH68 1400 aa9.22□□□□□ -0.93
RTF1-204ENST00000558117 SETD5Q9C0A6 1442 aa9.22□□□□□ -0.93
RTF1-204ENST00000558117 PRAMEF27A3QJZ7 478 aa9.21□□□□□ -0.94
RTF1-204ENST00000558117 MINDY4BA8MYZ0 360 aa9.21□□□□□ -0.94
RTF1-204ENST00000558117 COBLO75128 1261 aa9.21□□□□□ -0.94
RTF1-204ENST00000558117 PF4P02776 101 aa9.21□□□□□ -0.94
RTF1-204ENST00000558117 NEFMP07197 916 aa9.21□□□□□ -0.94
RTF1-204ENST00000558117 GBP2P32456 591 aaPredicted RBP9.21□□□□□ -0.94
RTF1-204ENST00000558117 PWP1Q13610 501 aa9.21□□□□□ -0.94
RTF1-204ENST00000558117 INPP5AQ14642 412 aa9.21□□□□□ -0.94
RTF1-204ENST00000558117 R3HDM1Q15032 1099 aaKnown RBP9.21□□□□□ -0.94
RTF1-204ENST00000558117 DUSP27Q5VZP5 1158 aa9.21□□□□□ -0.94
RTF1-204ENST00000558117 CDC37L1Q7L3B6 337 aa9.21□□□□□ -0.94
RTF1-204ENST00000558117 ISL2Q96A47 359 aa9.21□□□□□ -0.94
RTF1-204ENST00000558117 KBTBD4Q9NVX7 518 aa9.21□□□□□ -0.94
RTF1-204ENST00000558117 NKTRP30414 1462 aaKnown RBP9.21□□□□□ -0.94
RTF1-204ENST00000558117 FANCGO15287 622 aa9.2□□□□□ -0.94
RTF1-204ENST00000558117 DYNC1LI2O43237 492 aaPredicted RBP9.2□□□□□ -0.94
RTF1-204ENST00000558117 SSTR4P31391 388 aa9.2□□□□□ -0.94
RTF1-204ENST00000558117 ADMP35318 185 aa9.2□□□□□ -0.94
RTF1-204ENST00000558117 FANCCQ00597 558 aa9.2□□□□□ -0.94
RTF1-204ENST00000558117 WIPI1Q5MNZ9 446 aaPredicted RBP9.2□□□□□ -0.94
RTF1-204ENST00000558117 INTS5Q6P9B9 1019 aaKnown RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms