RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 LIG1P18858 919 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 POLR2BP30876 1174 aaKnown RBP4.33□□□□□ -1.72
TRAV28-201ENST00000557548 GRK4P32298 578 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 PIP4K2BP78356 416 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 SLC7A5Q01650 507 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 PDE4BQ07343 736 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 CBX2Q14781 532 aaPredicted RBP4.33□□□□□ -1.72
TRAV28-201ENST00000557548 ELOA3BQ3SY89 546 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 GNPTABQ3T906 1256 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 TM4SF20Q53R12 229 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 HSP90AB2PQ58FF8 381 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 ODR4Q5SWX8 454 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 CDCP2Q5VXM1 449 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 FOXB2Q5VYV0 432 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 INTS3Q68E01 1043 aaKnown RBP4.33□□□□□ -1.72
TRAV28-201ENST00000557548 FAM117BQ6P1L5 589 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 CYFIP1Q7L576 1253 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 C12orf40Q86WS4 652 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 THNSL2Q86YJ6 484 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 LRRC47Q8N1G4 583 aaKnown RBP4.33□□□□□ -1.72
TRAV28-201ENST00000557548 CACTIN-AS1Q8N1I8 211 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 ZBTB38Q8NAP3 1195 aaPredicted RBP4.33□□□□□ -1.72
TRAV28-201ENST00000557548 PRPF38AQ8NAV1 312 aaKnown RBP4.33□□□□□ -1.72
TRAV28-201ENST00000557548 ELOA3Q8NG57 546 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 NINJ1Q92982 152 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 SLC26A8Q96RN1 970 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 IER2Q9BTL4 223 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 JPH1Q9HDC5 661 aaPredicted RBP4.33□□□□□ -1.72
TRAV28-201ENST00000557548 HOMER2Q9NSB8 354 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 FAM86C1Q9NVL1 165 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 SUGT1Q9Y2Z0 365 aa4.33□□□□□ -1.72
TRAV28-201ENST00000557548 IQCA1LA6NCM1 817 aa4.32□□□□□ -1.72
TRAV28-201ENST00000557548 FSCN2O14926 492 aa4.32□□□□□ -1.72
TRAV28-201ENST00000557548 RAG1P15918 1043 aa4.32□□□□□ -1.72
TRAV28-201ENST00000557548 L1CAMP32004 1257 aa4.32□□□□□ -1.72
TRAV28-201ENST00000557548 ETF1P62495 437 aaKnown RBP4.32□□□□□ -1.72
TRAV28-201ENST00000557548 PABPC4Q13310 644 aaKnown RBP eCLIP4.32□□□□□ -1.72
TRAV28-201ENST00000557548 LONRF2Q1L5Z9 754 aa4.32□□□□□ -1.72
TRAV28-201ENST00000557548 FBLN7Q53RD9 439 aa4.32□□□□□ -1.72
TRAV28-201ENST00000557548 TMEM201Q5SNT2 666 aa4.32□□□□□ -1.72
TRAV28-201ENST00000557548 UBR7Q8N806 425 aa4.32□□□□□ -1.72
TRAV28-201ENST00000557548 CHAC2Q8WUX2 184 aa4.32□□□□□ -1.72
TRAV28-201ENST00000557548 ACSF2Q96CM8 615 aaPredicted RBP4.32□□□□□ -1.72
TRAV28-201ENST00000557548 EXOC2Q96KP1 924 aa4.32□□□□□ -1.72
TRAV28-201ENST00000557548 CEP89Q96ST8 783 aa4.32□□□□□ -1.72
TRAV28-201ENST00000557548 USP26Q9BXU7 913 aa4.32□□□□□ -1.72
TRAV28-201ENST00000557548 EPN3Q9H201 632 aa4.32□□□□□ -1.72
TRAV28-201ENST00000557548 OSGEPQ9NPF4 335 aa4.32□□□□□ -1.72
TRAV28-201ENST00000557548 GGA1Q9UJY5 639 aa4.32□□□□□ -1.72
TRAV28-201ENST00000557548 ZNF214Q9UL59 606 aaPredicted RBP4.32□□□□□ -1.72
TRAV28-201ENST00000557548 FAN1Q9Y2M0 1017 aa4.32□□□□□ -1.72
TRAV28-201ENST00000557548 ATP8A1Q9Y2Q0 1164 aa4.32□□□□□ -1.72
TRAV28-201ENST00000557548 STARD13Q9Y3M8 1113 aa4.32□□□□□ -1.72
TRAV28-201ENST00000557548 TACC3Q9Y6A5 838 aa4.32□□□□□ -1.72
TRAV28-201ENST00000557548 A0A087X0B3 334 aa4.31□□□□□ -1.72
TRAV28-201ENST00000557548 AGRPO00253 132 aa4.31□□□□□ -1.72
TRAV28-201ENST00000557548 KCNQ2O43526 872 aa4.31□□□□□ -1.72
TRAV28-201ENST00000557548 EIF4EBP3O60516 100 aaPredicted RBP4.31□□□□□ -1.72
TRAV28-201ENST00000557548 PDE8AO60658 829 aa4.31□□□□□ -1.72
TRAV28-201ENST00000557548 RAPGEF3O95398 923 aa4.31□□□□□ -1.72
TRAV28-201ENST00000557548 POU3F3P20264 500 aaPredicted RBP4.31□□□□□ -1.72
TRAV28-201ENST00000557548 STAT3P40763 770 aa4.31□□□□□ -1.72
TRAV28-201ENST00000557548 DGKGP49619 791 aa4.31□□□□□ -1.72
TRAV28-201ENST00000557548 NLRP12P59046 1061 aa4.31□□□□□ -1.72
TRAV28-201ENST00000557548 HNRNPUQ00839 825 aaKnown RBP eCLIP4.31□□□□□ -1.72
TRAV28-201ENST00000557548 KIF4BQ2VIQ3 1234 aa4.31□□□□□ -1.72
TRAV28-201ENST00000557548 SV2CQ496J9 727 aa4.31□□□□□ -1.72
TRAV28-201ENST00000557548 ZC3H12BQ5HYM0 836 aaKnown RBP4.31□□□□□ -1.72
TRAV28-201ENST00000557548 CT47A1Q5JQC4 288 aaPredicted RBP4.31□□□□□ -1.72
TRAV28-201ENST00000557548 TDRD10Q5VZ19 366 aaKnown RBP4.31□□□□□ -1.72
TRAV28-201ENST00000557548 FMNL3Q8IVF7 1028 aa4.31□□□□□ -1.72
TRAV28-201ENST00000557548 GOLGA6L1Q8N7Z2 621 aa4.31□□□□□ -1.72
TRAV28-201ENST00000557548 FAM13CQ8NE31 585 aa4.31□□□□□ -1.72
TRAV28-201ENST00000557548 WNT8BQ93098 351 aa4.31□□□□□ -1.72
TRAV28-201ENST00000557548 NCOA5Q9HCD5 579 aaKnown RBP4.31□□□□□ -1.72
TRAV28-201ENST00000557548 ARHGEF4Q9NR80 690 aa4.31□□□□□ -1.72
TRAV28-201ENST00000557548 PICK1Q9NRD5 415 aa4.31□□□□□ -1.72
TRAV28-201ENST00000557548 SLC52A1Q9NWF4 448 aa4.31□□□□□ -1.72
TRAV28-201ENST00000557548 ADAM30Q9UKF2 790 aa4.31□□□□□ -1.72
TRAV28-201ENST00000557548 RNF112Q9ULX5 631 aa4.31□□□□□ -1.72
TRAV28-201ENST00000557548 HIF3AQ9Y2N7 669 aa4.31□□□□□ -1.72
TRAV28-201ENST00000557548 A0A1W2PQU0 124 aa4.3□□□□□ -1.72
TRAV28-201ENST00000557548 KRTAP9-7A8MTY7 169 aa4.3□□□□□ -1.72
TRAV28-201ENST00000557548 ALBP02768 609 aa4.3□□□□□ -1.72
TRAV28-201ENST00000557548 TP53P04637 393 aaPredicted RBP4.3□□□□□ -1.72
TRAV28-201ENST00000557548 ALAS2P22557 587 aa4.3□□□□□ -1.72
TRAV28-201ENST00000557548 AFF1P51825 1210 aaKnown RBP4.3□□□□□ -1.72
TRAV28-201ENST00000557548 FAM50AQ14320 339 aaKnown RBP4.3□□□□□ -1.72
TRAV28-201ENST00000557548 BRDTQ58F21 947 aaPredicted RBP4.3□□□□□ -1.72
TRAV28-201ENST00000557548 ZC3H12AQ5D1E8 599 aaKnown RBP4.3□□□□□ -1.72
TRAV28-201ENST00000557548 PPM1JQ5JR12 505 aa4.3□□□□□ -1.72
TRAV28-201ENST00000557548 FAM209AQ5JX71 171 aa4.3□□□□□ -1.72
TRAV28-201ENST00000557548 YOD1Q5VVQ6 348 aaPredicted RBP4.3□□□□□ -1.72
TRAV28-201ENST00000557548 PPFIBP1Q86W92 1011 aa4.3□□□□□ -1.72
TRAV28-201ENST00000557548 DDX42Q86XP3 938 aaKnown RBP eCLIP4.3□□□□□ -1.72
TRAV28-201ENST00000557548 PHACTR4Q8IZ21 702 aa4.3□□□□□ -1.72
TRAV28-201ENST00000557548 KISS1RQ969F8 398 aaPredicted RBP4.3□□□□□ -1.72
TRAV28-201ENST00000557548 KLHDC7BQ96G42 594 aa4.3□□□□□ -1.72
TRAV28-201ENST00000557548 SGSM3Q96HU1 749 aa4.3□□□□□ -1.72
TRAV28-201ENST00000557548 SLC6A18Q96N87 628 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms