RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 SOWAHDA6NJG2 315 aa18.47■□□□□ 0.55
SHMT2-231ENST00000557433 IRS4O14654 1257 aaPredicted RBP18.47■□□□□ 0.55
SHMT2-231ENST00000557433 AKAP17AQ02040 695 aaKnown RBP18.47■□□□□ 0.55
SHMT2-231ENST00000557433 CTDSPL2Q05D32 466 aa18.47■□□□□ 0.55
SHMT2-231ENST00000557433 ZNF827Q17R98 1081 aa18.47■□□□□ 0.55
SHMT2-231ENST00000557433 RAD9BQ6WBX8 426 aa18.47■□□□□ 0.55
SHMT2-231ENST00000557433 IQUBQ8NA54 791 aa18.47■□□□□ 0.55
SHMT2-231ENST00000557433 GOLGA5Q8TBA6 731 aa18.47■□□□□ 0.55
SHMT2-231ENST00000557433 BCL9LQ86UU0 1499 aa18.47■□□□□ 0.55
SHMT2-231ENST00000557433 ANKRD36CQ5JPF3 1778 aa18.47■□□□□ 0.55
SHMT2-231ENST00000557433 HSP90AA4PQ58FG1 418 aa18.47■□□□□ 0.55
SHMT2-231ENST00000557433 ZNF654Q8IZM8 581 aa18.47■□□□□ 0.55
SHMT2-231ENST00000557433 MAGEB6Q8N7X4 407 aa18.47■□□□□ 0.55
SHMT2-231ENST00000557433 ANKRD20A12PQ8NF67 263 aa18.47■□□□□ 0.55
SHMT2-231ENST00000557433 PAGE5Q96GU1 130 aa18.47■□□□□ 0.55
SHMT2-231ENST00000557433 COL5A2P05997 1499 aaPredicted RBP18.46■□□□□ 0.55
SHMT2-231ENST00000557433 SHANK3Q9BYB0 1731 aa18.46■□□□□ 0.55
SHMT2-231ENST00000557433 LRRC10BA6NIK2 292 aa18.46■□□□□ 0.55
SHMT2-231ENST00000557433 KRT2P35908 639 aa18.46■□□□□ 0.55
SHMT2-231ENST00000557433 TDO2P48775 406 aa18.46■□□□□ 0.55
SHMT2-231ENST00000557433 DPYDQ12882 1025 aa18.46■□□□□ 0.55
SHMT2-231ENST00000557433 PTPN21Q16825 1174 aa18.46■□□□□ 0.55
SHMT2-231ENST00000557433 BEND6Q5SZJ8 279 aaPredicted RBP18.46■□□□□ 0.55
SHMT2-231ENST00000557433 EPC1Q9H2F5 836 aa18.46■□□□□ 0.55
SHMT2-231ENST00000557433 ACBD3Q9H3P7 528 aa18.46■□□□□ 0.55
SHMT2-231ENST00000557433 BRMS1Q9HCU9 246 aa18.46■□□□□ 0.55
SHMT2-231ENST00000557433 CABP5Q9NP86 173 aa18.46■□□□□ 0.55
SHMT2-231ENST00000557433 LIMA1Q9UHB6 759 aaKnown RBP18.46■□□□□ 0.55
SHMT2-231ENST00000557433 COL22A1Q8NFW1 1626 aaPredicted RBP18.46■□□□□ 0.55
SHMT2-231ENST00000557433 MYO5AQ9Y4I1 1855 aaKnown RBP18.46■□□□□ 0.55
SHMT2-231ENST00000557433 NR5A1Q13285 461 aa18.45■□□□□ 0.54
SHMT2-231ENST00000557433 KIF4BQ2VIQ3 1234 aa18.45■□□□□ 0.54
SHMT2-231ENST00000557433 NAPGQ99747 312 aaPredicted RBP18.45■□□□□ 0.54
SHMT2-231ENST00000557433 UBAC1Q9BSL1 405 aa18.45■□□□□ 0.54
SHMT2-231ENST00000557433 ANKZF1Q9H8Y5 726 aa18.45■□□□□ 0.54
SHMT2-231ENST00000557433 LZTFL1Q9NQ48 299 aa18.45■□□□□ 0.54
SHMT2-231ENST00000557433 PRDM11Q9NQV5 511 aa18.45■□□□□ 0.54
SHMT2-231ENST00000557433 TMEM51Q9NW97 253 aa18.45■□□□□ 0.54
SHMT2-231ENST00000557433 UBE2Q2LH0YL09 131 aa18.45■□□□□ 0.54
SHMT2-231ENST00000557433 TEX33O43247 280 aa18.45■□□□□ 0.54
SHMT2-231ENST00000557433 MTF1Q14872 753 aa18.45■□□□□ 0.54
SHMT2-231ENST00000557433 ZNF569Q5MCW4 686 aa18.45■□□□□ 0.54
SHMT2-231ENST00000557433 CYP26C1Q6V0L0 522 aa18.45■□□□□ 0.54
SHMT2-231ENST00000557433 GRAMD1CQ8IYS0 662 aa18.45■□□□□ 0.54
SHMT2-231ENST00000557433 ARMT1Q9H993 441 aa18.45■□□□□ 0.54
SHMT2-231ENST00000557433 RBM28Q9NW13 759 aaKnown RBP18.45■□□□□ 0.54
SHMT2-231ENST00000557433 ANAPC4Q9UJX5 808 aa18.45■□□□□ 0.54
SHMT2-231ENST00000557433 ADAM21Q9UKJ8 722 aa18.45■□□□□ 0.54
SHMT2-231ENST00000557433 ZNF330Q9Y3S2 320 aaPredicted RBP18.45■□□□□ 0.54
SHMT2-231ENST00000557433 ERVV-1B6SEH8 477 aa18.44■□□□□ 0.54
SHMT2-231ENST00000557433 PPP1R3GB7ZBB8 358 aa18.44■□□□□ 0.54
SHMT2-231ENST00000557433 PRPF3O43395 683 aaKnown RBP18.44■□□□□ 0.54
SHMT2-231ENST00000557433 ST5P78524 1137 aa18.44■□□□□ 0.54
SHMT2-231ENST00000557433 ZSCAN26Q16670 478 aa18.44■□□□□ 0.54
SHMT2-231ENST00000557433 DNAJC10Q8IXB1 793 aa18.44■□□□□ 0.54
SHMT2-231ENST00000557433 NEK11Q8NG66 645 aa18.44■□□□□ 0.54
SHMT2-231ENST00000557433 ESR2Q92731 530 aa18.44■□□□□ 0.54
SHMT2-231ENST00000557433 DDX17Q92841 729 aaKnown RBP18.44■□□□□ 0.54
SHMT2-231ENST00000557433 PHF20Q9BVI0 1012 aa18.44■□□□□ 0.54
SHMT2-231ENST00000557433 CTAGE15A4D2H0 777 aa18.43■□□□□ 0.54
SHMT2-231ENST00000557433 IVLP07476 585 aa18.43■□□□□ 0.54
SHMT2-231ENST00000557433 CTAGE8P0CG41 777 aa18.43■□□□□ 0.54
SHMT2-231ENST00000557433 CALM1P0DP23 149 aa18.43■□□□□ 0.54
SHMT2-231ENST00000557433 CALM2P0DP24 149 aa18.43■□□□□ 0.54
SHMT2-231ENST00000557433 CALM3P0DP25 149 aa18.43■□□□□ 0.54
SHMT2-231ENST00000557433 PCP11498 1178 aaKnown RBP18.43■□□□□ 0.54
SHMT2-231ENST00000557433 MCM3P25205 808 aa18.43■□□□□ 0.54
SHMT2-231ENST00000557433 CTAGE6Q86UF2 777 aa18.43■□□□□ 0.54
SHMT2-231ENST00000557433 CTAGE4Q8IX94 777 aa18.43■□□□□ 0.54
SHMT2-231ENST00000557433 TRMT112Q9UI30 125 aaKnown RBP18.43■□□□□ 0.54
SHMT2-231ENST00000557433 RWDD2AQ9UIY3 292 aa18.43■□□□□ 0.54
SHMT2-231ENST00000557433 L1RE1Q9UN81 338 aa18.43■□□□□ 0.54
SHMT2-231ENST00000557433 TACC3Q9Y6A5 838 aa18.43■□□□□ 0.54
SHMT2-231ENST00000557433 SLC4A4Q9Y6R1 1079 aa18.43■□□□□ 0.54
SHMT2-231ENST00000557433 BCORQ6W2J9 1755 aa18.43■□□□□ 0.54
SHMT2-231ENST00000557433 RAD51AP2Q09MP3 1159 aa18.43■□□□□ 0.54
SHMT2-231ENST00000557433 SEMA3FQ13275 785 aa18.43■□□□□ 0.54
SHMT2-231ENST00000557433 RMND1Q9NWS8 449 aa18.43■□□□□ 0.54
SHMT2-231ENST00000557433 TAOK2Q9UL54 1235 aa18.43■□□□□ 0.54
SHMT2-231ENST00000557433 RPS6KA5O75582 802 aa18.42■□□□□ 0.54
SHMT2-231ENST00000557433 GYPCP04921 128 aa18.42■□□□□ 0.54
SHMT2-231ENST00000557433 CD44P16070 742 aaKnown RBP18.42■□□□□ 0.54
SHMT2-231ENST00000557433 CASP14P31944 242 aa18.42■□□□□ 0.54
SHMT2-231ENST00000557433 TRAPPC10P48553 1259 aa18.42■□□□□ 0.54
SHMT2-231ENST00000557433 RASGRF1Q13972 1273 aa18.42■□□□□ 0.54
SHMT2-231ENST00000557433 RRP12Q5JTH9 1297 aaKnown RBP18.42■□□□□ 0.54
SHMT2-231ENST00000557433 TMED8Q6PL24 325 aaPredicted RBP18.42■□□□□ 0.54
SHMT2-231ENST00000557433 USP49Q70CQ1 688 aa18.42■□□□□ 0.54
SHMT2-231ENST00000557433 OXER1Q8TDS5 423 aa18.42■□□□□ 0.54
SHMT2-231ENST00000557433 SYMPKQ92797 1274 aaKnown RBP18.42■□□□□ 0.54
SHMT2-231ENST00000557433 ZCCHC17Q9NP64 241 aaKnown RBP18.42■□□□□ 0.54
SHMT2-231ENST00000557433 INCENPQ9NQS7 918 aa18.42■□□□□ 0.54
SHMT2-231ENST00000557433 SEC31BQ9NQW1 1179 aa18.42■□□□□ 0.54
SHMT2-231ENST00000557433 TOMM22Q9NS69 142 aa18.42■□□□□ 0.54
SHMT2-231ENST00000557433 ACTN2P35609 894 aa18.41■□□□□ 0.54
SHMT2-231ENST00000557433 PPARAQ07869 468 aa18.41■□□□□ 0.54
SHMT2-231ENST00000557433 SEC23AQ15436 765 aa18.41■□□□□ 0.54
SHMT2-231ENST00000557433 WDR93Q6P2C0 686 aa18.41■□□□□ 0.54
SHMT2-231ENST00000557433 NUP133Q8WUM0 1156 aa18.41■□□□□ 0.54
SHMT2-231ENST00000557433 DISP2A7MBM2 1401 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms