RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 ANAPC4Q9UJX5 808 aa16.16■□□□□ 0.18
SHMT2-228ENST00000557302 PHIPQ8WWQ0 1821 aa16.16■□□□□ 0.18
SHMT2-228ENST00000557302 C19orf81C9J6K1 198 aa16.15■□□□□ 0.18
SHMT2-228ENST00000557302 PDHXO00330 501 aa16.15■□□□□ 0.18
SHMT2-228ENST00000557302 PRDM1O75626 825 aa16.15■□□□□ 0.18
SHMT2-228ENST00000557302 CTDSPL2Q05D32 466 aa16.15■□□□□ 0.18
SHMT2-228ENST00000557302 CRHR2Q13324 411 aa16.15■□□□□ 0.18
SHMT2-228ENST00000557302 SH3D19Q5HYK7 790 aa16.15■□□□□ 0.18
SHMT2-228ENST00000557302 GPAT2Q6NUI2 795 aa16.15■□□□□ 0.18
SHMT2-228ENST00000557302 ZNF444Q8N0Y2 327 aaPredicted RBP16.15■□□□□ 0.18
SHMT2-228ENST00000557302 FEZ1Q99689 392 aa16.15■□□□□ 0.18
SHMT2-228ENST00000557302 ZFYVE28Q9HCC9 887 aa16.15■□□□□ 0.18
SHMT2-228ENST00000557302 TMOD4Q9NZQ9 345 aa16.15■□□□□ 0.18
SHMT2-228ENST00000557302 SGSM2O43147 1006 aa16.14■□□□□ 0.17
SHMT2-228ENST00000557302 USP14P54578 494 aa16.14■□□□□ 0.17
SHMT2-228ENST00000557302 ICA1Q05084 483 aa16.14■□□□□ 0.17
SHMT2-228ENST00000557302 USP17L2Q6R6M4 530 aa16.14■□□□□ 0.17
SHMT2-228ENST00000557302 R3HDMLQ9H3Y0 253 aa16.14■□□□□ 0.17
SHMT2-228ENST00000557302 AGTPBP1Q9UPW5 1226 aa16.14■□□□□ 0.17
SHMT2-228ENST00000557302 HAND2P61296 217 aa16.13■□□□□ 0.17
SHMT2-228ENST00000557302 NOM1Q5C9Z4 860 aaKnown RBP16.13■□□□□ 0.17
SHMT2-228ENST00000557302 CLEC10AQ8IUN9 316 aa16.13■□□□□ 0.17
SHMT2-228ENST00000557302 ACER1Q8TDN7 264 aa16.13■□□□□ 0.17
SHMT2-228ENST00000557302 PARK7Q99497 189 aaKnown RBP16.13■□□□□ 0.17
SHMT2-228ENST00000557302 KIAA1683Q9H0B3 1180 aa16.13■□□□□ 0.17
SHMT2-228ENST00000557302 SH2D4AQ9H788 454 aa16.13■□□□□ 0.17
SHMT2-228ENST00000557302 KANSL2Q9H9L4 492 aa16.13■□□□□ 0.17
SHMT2-228ENST00000557302 CTNNA3Q9UI47 895 aa16.13■□□□□ 0.17
SHMT2-228ENST00000557302 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.13■□□□□ 0.17
SHMT2-228ENST00000557302 SLC45A1Q9Y2W3 748 aa16.13■□□□□ 0.17
SHMT2-228ENST00000557302 MYH8P13535 1937 aa16.13■□□□□ 0.17
SHMT2-228ENST00000557302 GPR25O00155 361 aa16.12■□□□□ 0.17
SHMT2-228ENST00000557302 ZNF213O14771 459 aa16.12■□□□□ 0.17
SHMT2-228ENST00000557302 CDC45O75419 566 aa16.12■□□□□ 0.17
SHMT2-228ENST00000557302 TSPY3P0CV98 308 aa16.12■□□□□ 0.17
SHMT2-228ENST00000557302 TSPY8P0CW00 308 aa16.12■□□□□ 0.17
SHMT2-228ENST00000557302 PABPC4Q13310 644 aaKnown RBP eCLIP16.12■□□□□ 0.17
SHMT2-228ENST00000557302 DGKZQ13574 1117 aa16.12■□□□□ 0.17
SHMT2-228ENST00000557302 ZYXQ15942 572 aaKnown RBP16.12■□□□□ 0.17
SHMT2-228ENST00000557302 TREML2Q5T2D2 321 aa16.12■□□□□ 0.17
SHMT2-228ENST00000557302 CASC1Q6TDU7 716 aa16.12■□□□□ 0.17
SHMT2-228ENST00000557302 ARHGEF10LQ9HCE6 1279 aa16.12■□□□□ 0.17
SHMT2-228ENST00000557302 PTPRFP10586 1907 aa16.11■□□□□ 0.17
SHMT2-228ENST00000557302 ORC4O43929 436 aa16.11■□□□□ 0.17
SHMT2-228ENST00000557302 TFAP4Q01664 338 aa16.11■□□□□ 0.17
SHMT2-228ENST00000557302 ATP2B2Q01814 1243 aa16.11■□□□□ 0.17
SHMT2-228ENST00000557302 IMMTQ16891 758 aaKnown RBP16.11■□□□□ 0.17
SHMT2-228ENST00000557302 NEDD1Q8NHV4 660 aa16.11■□□□□ 0.17
SHMT2-228ENST00000557302 C12orf42Q96LP6 360 aa16.11■□□□□ 0.17
SHMT2-228ENST00000557302 ESYT1Q9BSJ8 1104 aa16.11■□□□□ 0.17
SHMT2-228ENST00000557302 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.11■□□□□ 0.17
SHMT2-228ENST00000557302 RNF41Q9H4P4 317 aaPredicted RBP16.11■□□□□ 0.17
SHMT2-228ENST00000557302 TOMM22Q9NS69 142 aa16.11■□□□□ 0.17
SHMT2-228ENST00000557302 EMILIN3Q9NT22 766 aa16.11■□□□□ 0.17
SHMT2-228ENST00000557302 PNMA3Q9UL41 463 aa16.11■□□□□ 0.17
SHMT2-228ENST00000557302 A0A1W2PRG0 241 aa16.1■□□□□ 0.17
SHMT2-228ENST00000557302 RANBP6O60518 1105 aaKnown RBP16.1■□□□□ 0.17
SHMT2-228ENST00000557302 TLR2O60603 784 aa16.1■□□□□ 0.17
SHMT2-228ENST00000557302 FGRP09769 529 aa16.1■□□□□ 0.17
SHMT2-228ENST00000557302 CYP2C8P10632 490 aa16.1■□□□□ 0.17
SHMT2-228ENST00000557302 PCP11498 1178 aaKnown RBP16.1■□□□□ 0.17
SHMT2-228ENST00000557302 EEF2P13639 858 aaKnown RBP16.1■□□□□ 0.17
SHMT2-228ENST00000557302 OSBPP22059 807 aa16.1■□□□□ 0.17
SHMT2-228ENST00000557302 PTH1RQ03431 593 aa16.1■□□□□ 0.17
SHMT2-228ENST00000557302 FAM47AQ5JRC9 791 aa16.1■□□□□ 0.17
SHMT2-228ENST00000557302 AKNAD1Q5T1N1 836 aa16.1■□□□□ 0.17
SHMT2-228ENST00000557302 MFSD6Q6ZSS7 791 aa16.1■□□□□ 0.17
SHMT2-228ENST00000557302 KIAA1211Q6ZU35 1233 aa16.1■□□□□ 0.17
SHMT2-228ENST00000557302 SIAH1Q8IUQ4 282 aa16.1■□□□□ 0.17
SHMT2-228ENST00000557302 TBC1D10CQ8IV04 446 aa16.1■□□□□ 0.17
SHMT2-228ENST00000557302 ZNF296Q8WUU4 475 aaPredicted RBP16.1■□□□□ 0.17
SHMT2-228ENST00000557302 NBPF3Q9H094 633 aa16.1■□□□□ 0.17
SHMT2-228ENST00000557302 INCENPQ9NQS7 918 aa16.1■□□□□ 0.17
SHMT2-228ENST00000557302 TACC3Q9Y6A5 838 aa16.1■□□□□ 0.17
SHMT2-228ENST00000557302 PLIN4Q96Q06 1357 aa16.1■□□□□ 0.17
SHMT2-228ENST00000557302 LOC285556D6RIA3 1793 aa16.1■□□□□ 0.17
SHMT2-228ENST00000557302 IGKV6D-41A0A0C4DH26 115 aa16.09■□□□□ 0.17
SHMT2-228ENST00000557302 TSPY2A6NKD2 308 aa16.09■□□□□ 0.17
SHMT2-228ENST00000557302 FKTNO75072 461 aa16.09■□□□□ 0.17
SHMT2-228ENST00000557302 RRP12Q5JTH9 1297 aaKnown RBP16.09■□□□□ 0.17
SHMT2-228ENST00000557302 SMCR8Q8TEV9 937 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-228ENST00000557302 STAG1Q8WVM7 1258 aa16.09■□□□□ 0.17
SHMT2-228ENST00000557302 NYAP2Q9P242 653 aa16.09■□□□□ 0.17
SHMT2-228ENST00000557302 TMX2Q9Y320 296 aa16.09■□□□□ 0.17
SHMT2-228ENST00000557302 U3KPZ7 1027 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-228ENST00000557302 CAPN15O75808 1086 aa16.08■□□□□ 0.16
SHMT2-228ENST00000557302 VCAM1P19320 739 aa16.08■□□□□ 0.16
SHMT2-228ENST00000557302 HOXA7P31268 230 aaPredicted RBP16.08■□□□□ 0.16
SHMT2-228ENST00000557302 IRX3P78415 501 aaPredicted RBP16.08■□□□□ 0.16
SHMT2-228ENST00000557302 PPP4R3BQ5MIZ7 849 aa16.08■□□□□ 0.16
SHMT2-228ENST00000557302 LPAR1Q92633 364 aa16.08■□□□□ 0.16
SHMT2-228ENST00000557302 CEP95Q96GE4 821 aa16.08■□□□□ 0.16
SHMT2-228ENST00000557302 ASCC2Q9H1I8 757 aaPredicted RBP16.08■□□□□ 0.16
SHMT2-228ENST00000557302 MTMR4Q9NYA4 1195 aa16.08■□□□□ 0.16
SHMT2-228ENST00000557302 ADGRA2Q96PE1 1338 aa16.08■□□□□ 0.16
SHMT2-228ENST00000557302 USP17L15C9J2P7 530 aa16.07■□□□□ 0.16
SHMT2-228ENST00000557302 USP17L13C9JLJ4 530 aa16.07■□□□□ 0.16
SHMT2-228ENST00000557302 USP17L11C9JVI0 530 aa16.07■□□□□ 0.16
SHMT2-228ENST00000557302 USP17L18D6R9N7 530 aa16.07■□□□□ 0.16
SHMT2-228ENST00000557302 USP17L22D6RA61 530 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms