RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 IQUBQ8NA54 791 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 MGARPQ8TDB4 240 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 FAM89AQ96GI7 184 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 TMEM87BQ96K49 555 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 NOX5Q96PH1 765 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 PRDM11Q9NQV5 511 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 SAMD15Q9P1V8 674 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 MRFAP1Q9Y605 127 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 PIK3C2BO00750 1634 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 TSPOAP1O95153 1857 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 MAST3O60307 1309 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 A0A1W2PQ27 194 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 A0A1W2PQ64 194 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 A0A1W2PQD8 194 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 ATP8B1O43520 1251 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 FMNL1O95466 1100 aaPredicted RBP5.57□□□□□ -1.52
SYNE2-223ENST00000557005 VIMP08670 466 aaKnown RBP5.57□□□□□ -1.52
SYNE2-223ENST00000557005 ADD1P35611 737 aaKnown RBP5.57□□□□□ -1.52
SYNE2-223ENST00000557005 KIF23Q02241 960 aaPredicted RBP5.57□□□□□ -1.52
SYNE2-223ENST00000557005 E2F4Q16254 413 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 KIAA0753Q2KHM9 967 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 RESP18Q5W5W9 173 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 CSGALNACT2Q8N6G5 542 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 DPF2Q92785 391 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 ATP10DQ9P241 1426 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 TLDC2A0PJX2 215 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 IKBKBO14920 756 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 PPP1R12BO60237 982 aaPredicted RBP5.57□□□□□ -1.52
SYNE2-223ENST00000557005 GNAT2P19087 354 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 KRT9P35527 623 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 COPB1P53618 953 aaKnown RBP5.57□□□□□ -1.52
SYNE2-223ENST00000557005 DYMQ7RTS9 669 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 TMTC2Q8N394 836 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 FBXO18Q8NFZ0 1043 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 APPBP2Q92624 585 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.57□□□□□ -1.52
SYNE2-223ENST00000557005 PUS3Q9BZE2 481 aaKnown RBP5.57□□□□□ -1.52
SYNE2-223ENST00000557005 SH3TC1Q8TE82 1336 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 NEXMIFQ5QGS0 1516 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 RPN1P04843 607 aaKnown RBP5.57□□□□□ -1.52
SYNE2-223ENST00000557005 CYP2C19P33261 490 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 GGCXP38435 758 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 TBC1D8BQ0IIM8 1120 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 LETM2Q2VYF4 491 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 FAM47AQ5JRC9 791 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 EFCAB13Q8IY85 973 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 TBC1D5Q92609 795 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 BPIFA3Q9BQP9 254 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 POLR3EQ9NVU0 708 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.57□□□□□ -1.52
SYNE2-223ENST00000557005 CDC23Q9UJX2 597 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 CRB1P82279 1406 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 CLTCQ00610 1675 aaKnown RBP5.57□□□□□ -1.52
SYNE2-223ENST00000557005 MYO1CO00159 1063 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 SASH1O94885 1247 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 SLFN14P0C7P3 912 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 CASP8Q14790 479 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 SNCBQ16143 134 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 SPATA5Q8NB90 893 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 C19orf44Q9H6X5 657 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 LRWD1Q9UFC0 647 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 STK38LQ9Y2H1 464 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 UTP11Q9Y3A2 253 aaKnown RBP5.57□□□□□ -1.52
SYNE2-223ENST00000557005 RIPOR2Q9Y4F9 1068 aa5.57□□□□□ -1.52
SYNE2-223ENST00000557005 RIMS1Q86UR5 1692 aaKnown RBP5.56□□□□□ -1.52
SYNE2-223ENST00000557005 STX10O60499 249 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 CALM1P0DP23 149 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 CALM2P0DP24 149 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 CALM3P0DP25 149 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 CCDC152Q4G0S7 254 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 SV2BQ7L1I2 683 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 TRMT1LQ7Z2T5 733 aaKnown RBP5.56□□□□□ -1.52
SYNE2-223ENST00000557005 RRP36Q96EU6 259 aaKnown RBP5.56□□□□□ -1.52
SYNE2-223ENST00000557005 IFIH1Q9BYX4 1025 aaKnown RBP5.56□□□□□ -1.52
SYNE2-223ENST00000557005 RAB34Q9BZG1 259 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 TAOK3Q9H2K8 898 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 FAM207AQ9NSI2 230 aaPredicted RBP5.56□□□□□ -1.52
SYNE2-223ENST00000557005 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.56□□□□□ -1.52
SYNE2-223ENST00000557005 USP6P35125 1406 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 NEDD4P46934 1319 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 TRIM66O15016 1216 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 FOXN1O15353 648 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 CHGBP05060 677 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 CXCR5P32302 372 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 ARHGAP25P42331 645 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 PPFIA1Q13136 1202 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 PICALMQ13492 652 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 CEP85LQ5SZL2 805 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 RRAGAQ7L523 313 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 C2CD5Q86YS7 1000 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 ZCRB1Q8TBF4 217 aaKnown RBP5.56□□□□□ -1.52
SYNE2-223ENST00000557005 MRRFQ96E11 262 aaKnown RBP5.56□□□□□ -1.52
SYNE2-223ENST00000557005 MROH7-TTC4A0A0A0MT08 1334 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 LOC102724159A0A0B4J2E5 919 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 EIF3CLB5ME19 914 aaKnown RBP5.56□□□□□ -1.52
SYNE2-223ENST00000557005 GIGYF1O75420 1035 aaPredicted RBP5.56□□□□□ -1.52
SYNE2-223ENST00000557005 FGAP02671 866 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 CASP1P29466 404 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 ATP11AP98196 1134 aa5.56□□□□□ -1.52
SYNE2-223ENST00000557005 PPARAQ07869 468 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms