RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 HAUS7Q99871 368 aa8.84□□□□□ -0.99
SCFD1-222ENST00000556768 REPIN1Q9BWE0 567 aaKnown RBP8.84□□□□□ -0.99
SCFD1-222ENST00000556768 MCM9Q9NXL9 1143 aa8.84□□□□□ -0.99
SCFD1-222ENST00000556768 BIN2Q9UBW5 565 aaPredicted RBP8.84□□□□□ -0.99
SCFD1-222ENST00000556768 ZNF532Q9HCE3 1301 aa8.83□□□□□ -1
SCFD1-222ENST00000556768 USP17L10C9JJH3 530 aa8.83□□□□□ -1
SCFD1-222ENST00000556768 SLURP2P0DP57 97 aa8.83□□□□□ -1
SCFD1-222ENST00000556768 GCLCP48506 637 aaPredicted RBP8.83□□□□□ -1
SCFD1-222ENST00000556768 HMGCS2P54868 508 aa8.83□□□□□ -1
SCFD1-222ENST00000556768 BACE1P56817 501 aa8.83□□□□□ -1
SCFD1-222ENST00000556768 PTGDRQ13258 359 aa8.83□□□□□ -1
SCFD1-222ENST00000556768 MOGSQ13724 837 aa8.83□□□□□ -1
SCFD1-222ENST00000556768 SLC4A8Q2Y0W8 1093 aa8.83□□□□□ -1
SCFD1-222ENST00000556768 CERKLQ49MI3 558 aaPredicted RBP8.83□□□□□ -1
SCFD1-222ENST00000556768 WDR18Q9BV38 432 aa8.83□□□□□ -1
SCFD1-222ENST00000556768 EHD4Q9H223 541 aa8.83□□□□□ -1
SCFD1-222ENST00000556768 DCTPP1Q9H773 170 aa8.83□□□□□ -1
SCFD1-222ENST00000556768 ECHDC1Q9NTX5 307 aa8.83□□□□□ -1
SCFD1-222ENST00000556768 IRX3P78415 501 aaPredicted RBP8.82□□□□□ -1
SCFD1-222ENST00000556768 RAB3GAP1Q15042 981 aa8.82□□□□□ -1
SCFD1-222ENST00000556768 SH3D19Q5HYK7 790 aa8.82□□□□□ -1
SCFD1-222ENST00000556768 CCAR1Q8IX12 1150 aaKnown RBP8.82□□□□□ -1
SCFD1-222ENST00000556768 COA7Q96BR5 231 aa8.82□□□□□ -1
SCFD1-222ENST00000556768 ARMC5Q96C12 935 aa8.82□□□□□ -1
SCFD1-222ENST00000556768 TRIM47Q96LD4 638 aa8.82□□□□□ -1
SCFD1-222ENST00000556768 FEZ1Q99689 392 aa8.82□□□□□ -1
SCFD1-222ENST00000556768 ATP8A2Q9NTI2 1148 aa8.82□□□□□ -1
SCFD1-222ENST00000556768 SRRDQ9UH36 339 aa8.82□□□□□ -1
SCFD1-222ENST00000556768 TNPO2O14787 897 aaKnown RBP8.82□□□□□ -1
SCFD1-222ENST00000556768 ERC2O15083 957 aa8.82□□□□□ -1
SCFD1-222ENST00000556768 GDF11O95390 407 aa8.82□□□□□ -1
SCFD1-222ENST00000556768 USP14P54578 494 aa8.82□□□□□ -1
SCFD1-222ENST00000556768 RRP1P56182 461 aaKnown RBP8.82□□□□□ -1
SCFD1-222ENST00000556768 MTMR2Q13614 643 aa8.82□□□□□ -1
SCFD1-222ENST00000556768 UBE3CQ15386 1083 aa8.82□□□□□ -1
SCFD1-222ENST00000556768 CCDC84Q86UT8 332 aaPredicted RBP8.82□□□□□ -1
SCFD1-222ENST00000556768 DDX12PQ92771 950 aa8.82□□□□□ -1
SCFD1-222ENST00000556768 RIOK1Q9BRS2 568 aaKnown RBP8.82□□□□□ -1
SCFD1-222ENST00000556768 TMEM121BQ9BXQ6 578 aaPredicted RBP8.82□□□□□ -1
SCFD1-222ENST00000556768 ZBTB21Q9ULJ3 1066 aa8.82□□□□□ -1
SCFD1-222ENST00000556768 PTCH2Q9Y6C5 1203 aa8.82□□□□□ -1
SCFD1-222ENST00000556768 MPHOSPH10O00566 681 aaKnown RBP8.81□□□□□ -1
SCFD1-222ENST00000556768 SMARCA5O60264 1052 aaPredicted RBP8.81□□□□□ -1
SCFD1-222ENST00000556768 GH2P01242 217 aa8.81□□□□□ -1
SCFD1-222ENST00000556768 BCRP11274 1271 aa8.81□□□□□ -1
SCFD1-222ENST00000556768 ADD2P35612 726 aa8.81□□□□□ -1
SCFD1-222ENST00000556768 UBXN2AP68543 259 aa8.81□□□□□ -1
SCFD1-222ENST00000556768 AAMPQ13685 434 aa8.81□□□□□ -1
SCFD1-222ENST00000556768 ABCB5Q2M3G0 1257 aa8.81□□□□□ -1
SCFD1-222ENST00000556768 TREML2Q5T2D2 321 aa8.81□□□□□ -1
SCFD1-222ENST00000556768 TATDN1Q6P1N9 297 aa8.81□□□□□ -1
SCFD1-222ENST00000556768 ANKRD13CQ8N6S4 541 aa8.81□□□□□ -1
SCFD1-222ENST00000556768 PDCD7Q8N8D1 485 aaKnown RBP8.81□□□□□ -1
SCFD1-222ENST00000556768 ARHGAP39Q9C0H5 1083 aa8.81□□□□□ -1
SCFD1-222ENST00000556768 BMP2KQ9NSY1 1161 aaPredicted RBP8.81□□□□□ -1
SCFD1-222ENST00000556768 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.81□□□□□ -1
SCFD1-222ENST00000556768 MYPNQ86TC9 1320 aa8.81□□□□□ -1
SCFD1-222ENST00000556768 GRK4P32298 578 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 FAM110CQ1W6H9 321 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 USP17L2Q6R6M4 530 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 CHRDL2Q6WN34 429 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 OXER1Q8TDS5 423 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 GTF3C2Q8WUA4 911 aaPredicted RBP8.8□□□□□ -1
SCFD1-222ENST00000556768 EDC3Q96F86 508 aaKnown RBP8.8□□□□□ -1
SCFD1-222ENST00000556768 ZNF333Q96JL9 665 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 TMUB1Q9BVT8 246 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 ASCC2Q9H1I8 757 aaPredicted RBP8.8□□□□□ -1
SCFD1-222ENST00000556768 DNAJC18Q9H819 358 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 ARMT1Q9H993 441 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 CWC22Q9HCG8 908 aaKnown RBP8.8□□□□□ -1
SCFD1-222ENST00000556768 DCP1AQ9NPI6 582 aaPredicted RBP8.8□□□□□ -1
SCFD1-222ENST00000556768 SWAP70Q9UH65 585 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 AK9Q5TCS8 1911 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 MYH2Q9UKX2 1941 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 MYH13Q9UKX3 1938 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 TCRBV5S4A2TA0A5A2 114 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 MBD4O95243 580 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 MYCP01106 439 aaPredicted RBP8.8□□□□□ -1
SCFD1-222ENST00000556768 ZFYP08048 801 aaPredicted RBP8.8□□□□□ -1
SCFD1-222ENST00000556768 HOXA7P31268 230 aaPredicted RBP8.8□□□□□ -1
SCFD1-222ENST00000556768 PLCD1P51178 756 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 RRP1BQ14684 758 aaKnown RBP8.8□□□□□ -1
SCFD1-222ENST00000556768 LCORLQ8N3X6 602 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 SLAIN1Q8ND83 568 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 NKX2-3Q8TAU0 364 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 SH3TC2Q8TF17 1288 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 SDR42E1Q8WUS8 393 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 SLC4A4Q9Y6R1 1079 aa8.8□□□□□ -1
SCFD1-222ENST00000556768 GLRX3O76003 335 aaKnown RBP8.79□□□□□ -1
SCFD1-222ENST00000556768 KBTBD3Q8NAB2 608 aa8.79□□□□□ -1
SCFD1-222ENST00000556768 GPRC5AQ8NFJ5 357 aa8.79□□□□□ -1
SCFD1-222ENST00000556768 SH2D4AQ9H788 454 aa8.79□□□□□ -1
SCFD1-222ENST00000556768 ZNF287Q9HBT7 754 aa8.79□□□□□ -1
SCFD1-222ENST00000556768 TNRC18O15417 2968 aaPredicted RBP8.79□□□□□ -1
SCFD1-222ENST00000556768 TTC41PQ6P2S7 1318 aa8.79□□□□□ -1
SCFD1-222ENST00000556768 ADGRA2Q96PE1 1338 aa8.79□□□□□ -1
SCFD1-222ENST00000556768 USP17L15C9J2P7 530 aa8.78□□□□□ -1
SCFD1-222ENST00000556768 USP17L13C9JLJ4 530 aa8.78□□□□□ -1
SCFD1-222ENST00000556768 USP17L11C9JVI0 530 aa8.78□□□□□ -1
SCFD1-222ENST00000556768 USP17L18D6R9N7 530 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms