RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 DTX1Q86Y01 620 aa7.52□□□□□ -1.21
SCFD1-221ENST00000556534 PLD6Q8N2A8 252 aaKnown RBP7.52□□□□□ -1.21
SCFD1-221ENST00000556534 BAHD1Q8TBE0 780 aaPredicted RBP7.52□□□□□ -1.21
SCFD1-221ENST00000556534 ATG4CQ96DT6 458 aa7.52□□□□□ -1.21
SCFD1-221ENST00000556534 FERD3LQ96RJ6 166 aa7.52□□□□□ -1.21
SCFD1-221ENST00000556534 CAPN10Q9HC96 672 aa7.52□□□□□ -1.21
SCFD1-221ENST00000556534 TPX2Q9ULW0 747 aaKnown RBP7.52□□□□□ -1.21
SCFD1-221ENST00000556534 ZNF865P0CJ78 1059 aaPredicted RBP7.51□□□□□ -1.21
SCFD1-221ENST00000556534 POLR2BP30876 1174 aaKnown RBP7.51□□□□□ -1.21
SCFD1-221ENST00000556534 NASPP49321 788 aaPredicted RBP7.51□□□□□ -1.21
SCFD1-221ENST00000556534 LRRFIP1Q32MZ4 808 aaKnown RBP7.51□□□□□ -1.21
SCFD1-221ENST00000556534 RBBP8NLQ8NC74 664 aaPredicted RBP7.51□□□□□ -1.21
SCFD1-221ENST00000556534 KIF2CQ99661 725 aa7.51□□□□□ -1.21
SCFD1-221ENST00000556534 PLAGL2Q9UPG8 496 aa7.51□□□□□ -1.21
SCFD1-221ENST00000556534 CEP131Q9UPN4 1083 aa7.51□□□□□ -1.21
SCFD1-221ENST00000556534 PRR33A8MZF0 331 aa7.5□□□□□ -1.21
SCFD1-221ENST00000556534 TNFRSF10CO14798 259 aa7.5□□□□□ -1.21
SCFD1-221ENST00000556534 RGS13O14921 159 aa7.5□□□□□ -1.21
SCFD1-221ENST00000556534 UBOX5O94941 541 aa7.5□□□□□ -1.21
SCFD1-221ENST00000556534 NME1P15531 152 aaKnown RBP7.5□□□□□ -1.21
SCFD1-221ENST00000556534 RAG1P15918 1043 aa7.5□□□□□ -1.21
SCFD1-221ENST00000556534 ITIH2P19823 946 aa7.5□□□□□ -1.21
SCFD1-221ENST00000556534 ETV3P41162 512 aa7.5□□□□□ -1.21
SCFD1-221ENST00000556534 SFRP5Q5T4F7 317 aa7.5□□□□□ -1.21
SCFD1-221ENST00000556534 ARTNQ5T4W7 220 aa7.5□□□□□ -1.21
SCFD1-221ENST00000556534 LSRQ86X29 649 aaPredicted RBP7.5□□□□□ -1.21
SCFD1-221ENST00000556534 SPACA3Q8IXA5 215 aa7.5□□□□□ -1.21
SCFD1-221ENST00000556534 PHACTR4Q8IZ21 702 aa7.5□□□□□ -1.21
SCFD1-221ENST00000556534 SEC16BQ96JE7 1060 aa7.5□□□□□ -1.21
SCFD1-221ENST00000556534 CCDC74BQ96LY2 380 aa7.5□□□□□ -1.21
SCFD1-221ENST00000556534 TNKS2Q9H2K2 1166 aa7.5□□□□□ -1.21
SCFD1-221ENST00000556534 SCO2A0A1W2PP80 73 aa7.49□□□□□ -1.21
SCFD1-221ENST00000556534 HYAL3O43820 417 aaPredicted RBP7.49□□□□□ -1.21
SCFD1-221ENST00000556534 PRNPP04156 253 aa7.49□□□□□ -1.21
SCFD1-221ENST00000556534 ATF4P18848 351 aaPredicted RBP7.49□□□□□ -1.21
SCFD1-221ENST00000556534 NKPD1Q17RQ9 610 aa7.49□□□□□ -1.21
SCFD1-221ENST00000556534 MFSD4AQ8N468 514 aa7.49□□□□□ -1.21
SCFD1-221ENST00000556534 NETO1Q8TDF5 533 aa7.49□□□□□ -1.21
SCFD1-221ENST00000556534 COX4I2Q96KJ9 171 aa7.49□□□□□ -1.21
SCFD1-221ENST00000556534 CAPN6Q9Y6Q1 641 aa7.49□□□□□ -1.21
SCFD1-221ENST00000556534 GNAT3A8MTJ3 354 aa7.48□□□□□ -1.21
SCFD1-221ENST00000556534 ACRP10323 421 aa7.48□□□□□ -1.21
SCFD1-221ENST00000556534 IFI16Q16666 785 aaKnown RBP7.48□□□□□ -1.21
SCFD1-221ENST00000556534 FBXW10Q5XX13 1052 aa7.48□□□□□ -1.21
SCFD1-221ENST00000556534 NFXL1Q6ZNB6 911 aa7.48□□□□□ -1.21
SCFD1-221ENST00000556534 ARHGAP27Q6ZUM4 889 aa7.48□□□□□ -1.21
SCFD1-221ENST00000556534 WFDC3Q8IUB2 231 aa7.48□□□□□ -1.21
SCFD1-221ENST00000556534 TAB3Q8N5C8 712 aaPredicted RBP7.48□□□□□ -1.21
SCFD1-221ENST00000556534 RNF141Q8WVD5 230 aa7.48□□□□□ -1.21
SCFD1-221ENST00000556534 SHDQ96IW2 340 aa7.48□□□□□ -1.21
SCFD1-221ENST00000556534 SRRTQ9BXP5 876 aaKnown RBP7.48□□□□□ -1.21
SCFD1-221ENST00000556534 PCMTD2Q9NV79 361 aa7.48□□□□□ -1.21
SCFD1-221ENST00000556534 BSDC1Q9NW68 430 aaPredicted RBP7.48□□□□□ -1.21
SCFD1-221ENST00000556534 ADAMTS4O75173 837 aa7.47□□□□□ -1.21
SCFD1-221ENST00000556534 FGRP09769 529 aa7.47□□□□□ -1.21
SCFD1-221ENST00000556534 CYP7A1P22680 504 aa7.47□□□□□ -1.21
SCFD1-221ENST00000556534 KIR3DL1P43629 444 aa7.47□□□□□ -1.21
SCFD1-221ENST00000556534 GIPRP48546 466 aa7.47□□□□□ -1.21
SCFD1-221ENST00000556534 ZC3H6P61129 1189 aaKnown RBP7.47□□□□□ -1.21
SCFD1-221ENST00000556534 Q96M66 194 aa7.47□□□□□ -1.21
SCFD1-221ENST00000556534 KREMEN1Q96MU8 473 aa7.47□□□□□ -1.21
SCFD1-221ENST00000556534 SLC9A7Q96T83 725 aa7.47□□□□□ -1.21
SCFD1-221ENST00000556534 STRIP2Q9ULQ0 834 aa7.47□□□□□ -1.21
SCFD1-221ENST00000556534 CBX7O95931 251 aa7.46□□□□□ -1.22
SCFD1-221ENST00000556534 CCNFP41002 786 aa7.46□□□□□ -1.22
SCFD1-221ENST00000556534 CLCN7P51798 805 aa7.46□□□□□ -1.22
SCFD1-221ENST00000556534 EIF6P56537 245 aaKnown RBP7.46□□□□□ -1.22
SCFD1-221ENST00000556534 GNL2Q13823 731 aaKnown RBP7.46□□□□□ -1.22
SCFD1-221ENST00000556534 RUFY4Q6ZNE9 571 aa7.46□□□□□ -1.22
SCFD1-221ENST00000556534 NPM2Q86SE8 214 aaKnown RBP7.46□□□□□ -1.22
SCFD1-221ENST00000556534 VSIG10LQ86VR7 867 aa7.46□□□□□ -1.22
SCFD1-221ENST00000556534 SLC43A3Q8NBI5 491 aa7.46□□□□□ -1.22
SCFD1-221ENST00000556534 VWCEQ96DN2 955 aa7.46□□□□□ -1.22
SCFD1-221ENST00000556534 TM9SF2Q99805 663 aa7.46□□□□□ -1.22
SCFD1-221ENST00000556534 ASPNQ9BXN1 380 aa7.46□□□□□ -1.22
SCFD1-221ENST00000556534 ZFP64Q9NPA5 681 aa7.46□□□□□ -1.22
SCFD1-221ENST00000556534 CCDC39Q9UFE4 941 aa7.46□□□□□ -1.22
SCFD1-221ENST00000556534 TMEM265A0A087WTH1 108 aa7.45□□□□□ -1.22
SCFD1-221ENST00000556534 GBP1P32455 592 aa7.45□□□□□ -1.22
SCFD1-221ENST00000556534 TNK2Q07912 1038 aa7.45□□□□□ -1.22
SCFD1-221ENST00000556534 Q8N3U1 123 aa7.45□□□□□ -1.22
SCFD1-221ENST00000556534 ST14Q9Y5Y6 855 aa7.45□□□□□ -1.22
SCFD1-221ENST00000556534 GUCY2CP25092 1073 aa7.44□□□□□ -1.22
SCFD1-221ENST00000556534 ZYXQ15942 572 aaKnown RBP7.44□□□□□ -1.22
SCFD1-221ENST00000556534 INTS3Q68E01 1043 aaKnown RBP7.44□□□□□ -1.22
SCFD1-221ENST00000556534 TMEM192Q8IY95 271 aa7.44□□□□□ -1.22
SCFD1-221ENST00000556534 FAM169BQ8N8A8 192 aa7.44□□□□□ -1.22
SCFD1-221ENST00000556534 DTWD2Q8NBA8 298 aa7.44□□□□□ -1.22
SCFD1-221ENST00000556534 OR6P1Q8NGX9 317 aa7.44□□□□□ -1.22
SCFD1-221ENST00000556534 PIWIL2Q8TC59 973 aaKnown RBP7.44□□□□□ -1.22
SCFD1-221ENST00000556534 BCL7CQ8WUZ0 217 aaPredicted RBP7.44□□□□□ -1.22
SCFD1-221ENST00000556534 MISP3Q96FF7 219 aa7.44□□□□□ -1.22
SCFD1-221ENST00000556534 C8orf37Q96NL8 207 aa7.44□□□□□ -1.22
SCFD1-221ENST00000556534 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.44□□□□□ -1.22
SCFD1-221ENST00000556534 SNX11Q9Y5W9 270 aa7.44□□□□□ -1.22
SCFD1-221ENST00000556534 PITPNM2Q9BZ72 1349 aa7.44□□□□□ -1.22
SCFD1-221ENST00000556534 FAM155AB1AL88 458 aaPredicted RBP7.43□□□□□ -1.22
SCFD1-221ENST00000556534 LRRN2O75325 713 aa7.43□□□□□ -1.22
SCFD1-221ENST00000556534 RNF4P78317 190 aa7.43□□□□□ -1.22
SCFD1-221ENST00000556534 ARID5AQ03989 594 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms