RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 TCHHQ07283 1943 aa16.8■□□□□ 0.28
CUX1-215ENST00000556210 DYMQ7RTS9 669 aa16.8■□□□□ 0.28
CUX1-215ENST00000556210 VGLL3A8MV65 326 aa16.8■□□□□ 0.28
CUX1-215ENST00000556210 TDRD12Q587J7 1177 aaKnown RBP16.8■□□□□ 0.28
CUX1-215ENST00000556210 PSMB7Q99436 277 aa16.8■□□□□ 0.28
CUX1-215ENST00000556210 DDX41Q9UJV9 622 aaKnown RBP16.8■□□□□ 0.28
CUX1-215ENST00000556210 UBR1Q8IWV7 1749 aa16.8■□□□□ 0.28
CUX1-215ENST00000556210 PALLDQ8WX93 1383 aa16.8■□□□□ 0.28
CUX1-215ENST00000556210 FMNL1O95466 1100 aaPredicted RBP16.8■□□□□ 0.28
CUX1-215ENST00000556210 TRAPPC3LQ5T215 181 aa16.8■□□□□ 0.28
CUX1-215ENST00000556210 SPTY2D1Q68D10 685 aaPredicted RBP16.8■□□□□ 0.28
CUX1-215ENST00000556210 FBXO38Q6PIJ6 1188 aa16.8■□□□□ 0.28
CUX1-215ENST00000556210 PNMA1Q8ND90 353 aa16.8■□□□□ 0.28
CUX1-215ENST00000556210 SLC4A9Q96Q91 983 aa16.8■□□□□ 0.28
CUX1-215ENST00000556210 SYNRGQ9UMZ2 1314 aa16.79■□□□□ 0.28
CUX1-215ENST00000556210 CCNT1O60563 726 aaKnown RBP16.79■□□□□ 0.28
CUX1-215ENST00000556210 KLRK1P26718 216 aa16.79■□□□□ 0.28
CUX1-215ENST00000556210 RBM6P78332 1123 aaKnown RBP16.79■□□□□ 0.28
CUX1-215ENST00000556210 MECOMQ03112 1051 aa16.79■□□□□ 0.28
CUX1-215ENST00000556210 TCP10Q12799 353 aa16.79■□□□□ 0.28
CUX1-215ENST00000556210 LEKR1Q6ZMV7 388 aa16.79■□□□□ 0.28
CUX1-215ENST00000556210 GDAP1L1Q96MZ0 367 aa16.79■□□□□ 0.28
CUX1-215ENST00000556210 MROH7-TTC4A0A0A0MT08 1334 aa16.79■□□□□ 0.28
CUX1-215ENST00000556210 AKR1B15C9JRZ8 316 aaPredicted RBP16.79■□□□□ 0.28
CUX1-215ENST00000556210 CCDC175P0C221 793 aa16.79■□□□□ 0.28
CUX1-215ENST00000556210 ILDR1Q86SU0 546 aaPredicted RBP16.79■□□□□ 0.28
CUX1-215ENST00000556210 IGDCC4Q8TDY8 1250 aa16.79■□□□□ 0.28
CUX1-215ENST00000556210 PPP1R13BQ96KQ4 1090 aa16.79■□□□□ 0.28
CUX1-215ENST00000556210 SLF1Q9BQI6 1058 aa16.79■□□□□ 0.28
CUX1-215ENST00000556210 MAN1B1Q9UKM7 699 aa16.79■□□□□ 0.28
CUX1-215ENST00000556210 LDHCP07864 332 aa16.79■□□□□ 0.28
CUX1-215ENST00000556210 TRIM28Q13263 835 aaKnown RBP16.79■□□□□ 0.28
CUX1-215ENST00000556210 ITPK1Q13572 414 aa16.79■□□□□ 0.28
CUX1-215ENST00000556210 MMRN2Q9H8L6 949 aa16.79■□□□□ 0.28
CUX1-215ENST00000556210 FRMPD2Q68DX3 1309 aaPredicted RBP16.78■□□□□ 0.28
CUX1-215ENST00000556210 ARID4AP29374 1257 aaPredicted RBP16.78■□□□□ 0.28
CUX1-215ENST00000556210 LRP10Q7Z4F1 713 aa16.78■□□□□ 0.28
CUX1-215ENST00000556210 JADE2Q9NQC1 790 aa16.78■□□□□ 0.28
CUX1-215ENST00000556210 TBC1D7Q9P0N9 293 aa16.78■□□□□ 0.28
CUX1-215ENST00000556210 ARHGAP23Q9P227 1491 aa16.78■□□□□ 0.28
CUX1-215ENST00000556210 MYO1BO43795 1136 aa16.78■□□□□ 0.28
CUX1-215ENST00000556210 LMAN1P49257 510 aa16.78■□□□□ 0.28
CUX1-215ENST00000556210 SPECC1LQ69YQ0 1117 aa16.78■□□□□ 0.28
CUX1-215ENST00000556210 ENAHQ8N8S7 591 aaPredicted RBP16.78■□□□□ 0.28
CUX1-215ENST00000556210 ALDH8A1Q9H2A2 487 aaPredicted RBP16.78■□□□□ 0.28
CUX1-215ENST00000556210 BIN2Q9UBW5 565 aaPredicted RBP16.78■□□□□ 0.28
CUX1-215ENST00000556210 AXDND1Q5T1B0 1012 aaPredicted RBP16.78■□□□□ 0.28
CUX1-215ENST00000556210 TBC1D9BQ66K14 1250 aa16.78■□□□□ 0.28
CUX1-215ENST00000556210 CACNA2D4Q7Z3S7 1137 aa16.78■□□□□ 0.28
CUX1-215ENST00000556210 MLKLQ8NB16 471 aa16.78■□□□□ 0.28
CUX1-215ENST00000556210 PLEKHA4Q9H4M7 779 aa16.78■□□□□ 0.28
CUX1-215ENST00000556210 EXOC1Q9NV70 894 aa16.78■□□□□ 0.28
CUX1-215ENST00000556210 MINPP1Q9UNW1 487 aa16.78■□□□□ 0.28
CUX1-215ENST00000556210 CTIFO43310 598 aaKnown RBP16.77■□□□□ 0.28
CUX1-215ENST00000556210 KRT9P35527 623 aa16.77■□□□□ 0.28
CUX1-215ENST00000556210 SCNN1DP51172 638 aa16.77■□□□□ 0.28
CUX1-215ENST00000556210 KMT5BQ4FZB7 885 aa16.77■□□□□ 0.28
CUX1-215ENST00000556210 PIK3C2AO00443 1686 aa16.77■□□□□ 0.28
CUX1-215ENST00000556210 ZNF76P36508 570 aa16.77■□□□□ 0.28
CUX1-215ENST00000556210 ZNF287Q9HBT7 754 aa16.77■□□□□ 0.28
CUX1-215ENST00000556210 CALM1P0DP23 149 aa16.77■□□□□ 0.27
CUX1-215ENST00000556210 CALM2P0DP24 149 aa16.77■□□□□ 0.27
CUX1-215ENST00000556210 CALM3P0DP25 149 aa16.77■□□□□ 0.27
CUX1-215ENST00000556210 ENGASEQ8NFI3 743 aa16.77■□□□□ 0.27
CUX1-215ENST00000556210 GTF2IP78347 998 aa16.76■□□□□ 0.27
CUX1-215ENST00000556210 LRRC47Q8N1G4 583 aaKnown RBP16.76■□□□□ 0.27
CUX1-215ENST00000556210 NYXQ9GZU5 481 aa16.76■□□□□ 0.27
CUX1-215ENST00000556210 ARFGAP3Q9NP61 516 aa16.76■□□□□ 0.27
CUX1-215ENST00000556210 MON2Q7Z3U7 1717 aa16.76■□□□□ 0.27
CUX1-215ENST00000556210 CPDO75976 1380 aa16.76■□□□□ 0.27
CUX1-215ENST00000556210 ERVV-1B6SEH8 477 aa16.76■□□□□ 0.27
CUX1-215ENST00000556210 LIFRP42702 1097 aa16.76■□□□□ 0.27
CUX1-215ENST00000556210 TCERG1LQ5VWI1 586 aa16.76■□□□□ 0.27
CUX1-215ENST00000556210 ARMCX5Q6P1M9 558 aa16.76■□□□□ 0.27
CUX1-215ENST00000556210 NKX2-3Q8TAU0 364 aa16.76■□□□□ 0.27
CUX1-215ENST00000556210 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.76■□□□□ 0.278e-7■■□□□ 12.7
CUX1-215ENST00000556210 ZNF804BA4D1E1 1349 aa16.76■□□□□ 0.27
CUX1-215ENST00000556210 MACROD2A1Z1Q3 448 aa16.76■□□□□ 0.27
CUX1-215ENST00000556210 SYCP1Q15431 976 aa16.76■□□□□ 0.27
CUX1-215ENST00000556210 METTL16Q86W50 562 aaKnown RBP16.76■□□□□ 0.27
CUX1-215ENST00000556210 CALML4Q96GE6 196 aa16.76■□□□□ 0.27
CUX1-215ENST00000556210 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.76■□□□□ 0.274e-6■■■■□ 23.2
CUX1-215ENST00000556210 IRX2Q9BZI1 471 aaPredicted RBP16.76■□□□□ 0.27
CUX1-215ENST00000556210 CENPHQ9H3R5 247 aa16.76■□□□□ 0.27
CUX1-215ENST00000556210 PP2D1A8MPX8 630 aa16.75■□□□□ 0.27
CUX1-215ENST00000556210 ETF1P62495 437 aaKnown RBP16.75■□□□□ 0.27
CUX1-215ENST00000556210 MFSD14BQ5SR56 506 aa16.75■□□□□ 0.27
CUX1-215ENST00000556210 CCDC70Q6NSX1 233 aa16.75■□□□□ 0.27
CUX1-215ENST00000556210 ZNF804AQ7Z570 1209 aa16.75■□□□□ 0.27
CUX1-215ENST00000556210 PSMA7O14818 248 aa16.75■□□□□ 0.27
CUX1-215ENST00000556210 SCG2P13521 617 aa16.75■□□□□ 0.27
CUX1-215ENST00000556210 TERF2Q15554 542 aa16.75■□□□□ 0.27
CUX1-215ENST00000556210 CCDC181Q5TID7 509 aa16.75■□□□□ 0.27
CUX1-215ENST00000556210 MARCH10Q8NA82 808 aaPredicted RBP16.75■□□□□ 0.27
CUX1-215ENST00000556210 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.75■□□□□ 0.27
CUX1-215ENST00000556210 ZC3H12CQ9C0D7 883 aaKnown RBP16.75■□□□□ 0.27
CUX1-215ENST00000556210 BMP2KQ9NSY1 1161 aaPredicted RBP16.75■□□□□ 0.27
CUX1-215ENST00000556210 IMPACTQ9P2X3 320 aa16.75■□□□□ 0.27
CUX1-215ENST00000556210 PPP2R2CQ9Y2T4 447 aa16.75■□□□□ 0.27
CUX1-215ENST00000556210 TECP42680 631 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms