RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 SLC4A8Q2Y0W8 1093 aa17.06■□□□□ 0.32
VPS33B-205ENST00000556096 IL17RBQ9NRM6 502 aa17.06■□□□□ 0.32
VPS33B-205ENST00000556096 SYCE3A1L190 88 aa17.05■□□□□ 0.32
VPS33B-205ENST00000556096 PRPF3O43395 683 aaKnown RBP17.05■□□□□ 0.32
VPS33B-205ENST00000556096 TSPY3P0CV98 308 aa17.05■□□□□ 0.32
VPS33B-205ENST00000556096 TSPY8P0CW00 308 aa17.05■□□□□ 0.32
VPS33B-205ENST00000556096 U2AF2P26368 475 aaKnown RBP eCLIP17.05■□□□□ 0.32
VPS33B-205ENST00000556096 MYSM1Q5VVJ2 828 aa17.05■□□□□ 0.32
VPS33B-205ENST00000556096 APOBEC3HQ6NTF7 200 aaKnown RBP17.05■□□□□ 0.32
VPS33B-205ENST00000556096 PGBD1Q96JS3 809 aa17.05■□□□□ 0.32
VPS33B-205ENST00000556096 ZDHHC15Q96MV8 337 aa17.05■□□□□ 0.32
VPS33B-205ENST00000556096 USP40Q9NVE5 1235 aa17.05■□□□□ 0.32
VPS33B-205ENST00000556096 MYH1P12882 1939 aa17.05■□□□□ 0.32
VPS33B-205ENST00000556096 ECM29Q5VYK3 1845 aa17.05■□□□□ 0.32
VPS33B-205ENST00000556096 KIF28PB7ZC32 967 aa17.04■□□□□ 0.32
VPS33B-205ENST00000556096 WDHD1O75717 1129 aaPredicted RBP17.04■□□□□ 0.32
VPS33B-205ENST00000556096 CRKP46108 304 aa17.04■□□□□ 0.32
VPS33B-205ENST00000556096 SCNN1DP51172 638 aa17.04■□□□□ 0.32
VPS33B-205ENST00000556096 TMTC3Q6ZXV5 915 aa17.04■□□□□ 0.32
VPS33B-205ENST00000556096 NIM1KQ8IY84 436 aa17.04■□□□□ 0.32
VPS33B-205ENST00000556096 CTCFLQ8NI51 663 aaPredicted RBP17.04■□□□□ 0.32
VPS33B-205ENST00000556096 KAT14Q9H8E8 782 aa17.04■□□□□ 0.32
VPS33B-205ENST00000556096 POLR3EQ9NVU0 708 aa17.04■□□□□ 0.32
VPS33B-205ENST00000556096 YEATS4O95619 227 aa17.04■□□□□ 0.32
VPS33B-205ENST00000556096 GUCY1A2P33402 732 aa17.04■□□□□ 0.32
VPS33B-205ENST00000556096 AKAP17AQ02040 695 aaKnown RBP17.04■□□□□ 0.32
VPS33B-205ENST00000556096 CDC42EP5Q6NZY7 148 aa17.04■□□□□ 0.32
VPS33B-205ENST00000556096 SLC44A5Q8NCS7 719 aa17.04■□□□□ 0.32
VPS33B-205ENST00000556096 NEDD1Q8NHV4 660 aa17.04■□□□□ 0.32
VPS33B-205ENST00000556096 JDP2Q8WYK2 163 aa17.04■□□□□ 0.32
VPS33B-205ENST00000556096 DICER1Q9UPY3 1922 aaKnown RBP17.03■□□□□ 0.32
VPS33B-205ENST00000556096 MMP1P03956 469 aa17.03■□□□□ 0.32
VPS33B-205ENST00000556096 NASPP49321 788 aaPredicted RBP17.03■□□□□ 0.32
VPS33B-205ENST00000556096 ZNF541Q9H0D2 1346 aa17.03■□□□□ 0.32
VPS33B-205ENST00000556096 UBE2Q2LH0YL09 131 aa17.02■□□□□ 0.32
VPS33B-205ENST00000556096 RAD17O75943 681 aa17.02■□□□□ 0.32
VPS33B-205ENST00000556096 YY1P25490 414 aa17.02■□□□□ 0.32
VPS33B-205ENST00000556096 KIF5BP33176 963 aa17.02■□□□□ 0.32
VPS33B-205ENST00000556096 CEBPZQ03701 1054 aaKnown RBP17.02■□□□□ 0.32
VPS33B-205ENST00000556096 GABPAQ06546 454 aa17.02■□□□□ 0.32
VPS33B-205ENST00000556096 SAFBQ15424 915 aaKnown RBP eCLIP17.02■□□□□ 0.32
VPS33B-205ENST00000556096 CMTR1Q8N1G2 835 aaKnown RBP17.02■□□□□ 0.32
VPS33B-205ENST00000556096 CCDC82Q8N4S0 544 aa17.02■□□□□ 0.32
VPS33B-205ENST00000556096 LINC00301Q8NCQ3 95 aa17.02■□□□□ 0.32
VPS33B-205ENST00000556096 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.02■□□□□ 0.32
VPS33B-205ENST00000556096 DDX4Q9NQI0 724 aaKnown RBP17.02■□□□□ 0.32
VPS33B-205ENST00000556096 SERPINA10Q9UK55 444 aa17.02■□□□□ 0.32
VPS33B-205ENST00000556096 PLEKHA8P1O95397 391 aa17.01■□□□□ 0.31
VPS33B-205ENST00000556096 XBP1P17861 261 aa17.01■□□□□ 0.31
VPS33B-205ENST00000556096 LIG1P18858 919 aa17.01■□□□□ 0.31
VPS33B-205ENST00000556096 NOVP48745 357 aa17.01■□□□□ 0.31
VPS33B-205ENST00000556096 PICALMQ13492 652 aa17.01■□□□□ 0.31
VPS33B-205ENST00000556096 PKN1Q16512 942 aa17.01■□□□□ 0.31
VPS33B-205ENST00000556096 KIAA0825Q8IV33 1275 aa17.01■□□□□ 0.31
VPS33B-205ENST00000556096 PNMA1Q8ND90 353 aa17.01■□□□□ 0.31
VPS33B-205ENST00000556096 FTOQ9C0B1 505 aaKnown RBP eCLIP17.01■□□□□ 0.31
VPS33B-205ENST00000556096 OSBPL5Q9H0X9 879 aaPredicted RBP17.01■□□□□ 0.31
VPS33B-205ENST00000556096 FOXP1Q9H334 677 aaPredicted RBP17.01■□□□□ 0.31
VPS33B-205ENST00000556096 NPM3O75607 178 aaKnown RBP17.01■□□□□ 0.31
VPS33B-205ENST00000556096 GNAQP50148 359 aa17.01■□□□□ 0.31
VPS33B-205ENST00000556096 GNL2Q13823 731 aaKnown RBP17.01■□□□□ 0.31
VPS33B-205ENST00000556096 TPRNQ4KMQ1 711 aa17.01■□□□□ 0.31
VPS33B-205ENST00000556096 SRBD1Q8N5C6 995 aaKnown RBP17.01■□□□□ 0.31
VPS33B-205ENST00000556096 KCNG4Q8TDN1 519 aa17.01■□□□□ 0.31
VPS33B-205ENST00000556096 ZNF526Q8TF50 670 aaPredicted RBP17.01■□□□□ 0.31
VPS33B-205ENST00000556096 DDX19AQ9NUU7 478 aaKnown RBP17.01■□□□□ 0.31
VPS33B-205ENST00000556096 SWAP70Q9UH65 585 aa17.01■□□□□ 0.31
VPS33B-205ENST00000556096 TAOK2Q9UL54 1235 aa17.01■□□□□ 0.31
VPS33B-205ENST00000556096 ZNRF3Q9ULT6 936 aa17.01■□□□□ 0.31
VPS33B-205ENST00000556096 GJA3Q9Y6H8 435 aa17.01■□□□□ 0.31
VPS33B-205ENST00000556096 MYO3BQ8WXR4 1341 aa17.01■□□□□ 0.31
VPS33B-205ENST00000556096 GRM4Q14833 912 aa17■□□□□ 0.31
VPS33B-205ENST00000556096 ANO1Q5XXA6 986 aa17■□□□□ 0.31
VPS33B-205ENST00000556096 BICD2Q8TD16 824 aa17■□□□□ 0.31
VPS33B-205ENST00000556096 IDI2Q9BXS1 227 aa17■□□□□ 0.31
VPS33B-205ENST00000556096 TSPY26PQ9H489 355 aa17■□□□□ 0.31
VPS33B-205ENST00000556096 CLIC4Q9Y696 253 aa17■□□□□ 0.31
VPS33B-205ENST00000556096 V9GY48 417 aaPredicted RBP17■□□□□ 0.31
VPS33B-205ENST00000556096 CNTNAP5Q8WYK1 1306 aa17■□□□□ 0.31
VPS33B-205ENST00000556096 PLIN4Q96Q06 1357 aa17■□□□□ 0.31
VPS33B-205ENST00000556096 STK38Q15208 465 aa16.99■□□□□ 0.31
VPS33B-205ENST00000556096 NOSTRINQ8IVI9 506 aa16.99■□□□□ 0.31
VPS33B-205ENST00000556096 TMEM47Q9BQJ4 181 aa16.99■□□□□ 0.31
VPS33B-205ENST00000556096 RBSNQ9H1K0 784 aa16.99■□□□□ 0.31
VPS33B-205ENST00000556096 A0A1W2PQ27 194 aa16.99■□□□□ 0.31
VPS33B-205ENST00000556096 A0A1W2PQ64 194 aa16.99■□□□□ 0.31
VPS33B-205ENST00000556096 A0A1W2PQD8 194 aa16.99■□□□□ 0.31
VPS33B-205ENST00000556096 FZD9O00144 591 aa16.99■□□□□ 0.31
VPS33B-205ENST00000556096 PSMD14O00487 310 aa16.99■□□□□ 0.31
VPS33B-205ENST00000556096 DDNO94850 711 aaPredicted RBP16.99■□□□□ 0.31
VPS33B-205ENST00000556096 CXCL9Q07325 125 aa16.99■□□□□ 0.31
VPS33B-205ENST00000556096 ADALQ6DHV7 355 aa16.99■□□□□ 0.31
VPS33B-205ENST00000556096 DIS3L2Q8IYB7 885 aaKnown RBP16.99■□□□□ 0.31
VPS33B-205ENST00000556096 EHD4Q9H223 541 aa16.99■□□□□ 0.31
VPS33B-205ENST00000556096 DACT1Q9NYF0 836 aa16.99■□□□□ 0.31
VPS33B-205ENST00000556096 SERPINB13Q9UIV8 391 aa16.99■□□□□ 0.31
VPS33B-205ENST00000556096 PCDHA7Q9UN72 937 aa16.99■□□□□ 0.31
VPS33B-205ENST00000556096 KCNJ14Q9UNX9 436 aa16.99■□□□□ 0.31
VPS33B-205ENST00000556096 MYH6P13533 1939 aa16.98■□□□□ 0.31
VPS33B-205ENST00000556096 BTBD18B2RXH4 712 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms