RNA–Protein interactions for RNA: ENST00000556079.1

TMEM260-209, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 596 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-209ENST00000556079 SPP2Q13103 211 aa7.74□□□□□ -1.17
TMEM260-209ENST00000556079 ZYXQ15942 572 aaKnown RBP7.74□□□□□ -1.17
TMEM260-209ENST00000556079 SLC9C1Q4G0N8 1177 aa7.74□□□□□ -1.17
TMEM260-209ENST00000556079 PRRT2Q7Z6L0 340 aaPredicted RBP7.74□□□□□ -1.17
TMEM260-209ENST00000556079 STK11IPQ8N1F8 1099 aa7.74□□□□□ -1.17
TMEM260-209ENST00000556079 ZNF710Q8N1W2 664 aa7.74□□□□□ -1.17
TMEM260-209ENST00000556079 SH3TC2Q8TF17 1288 aa7.74□□□□□ -1.17
TMEM260-209ENST00000556079 HAUS7Q99871 368 aa7.74□□□□□ -1.17
TMEM260-209ENST00000556079 PICK1Q9NRD5 415 aa7.74□□□□□ -1.17
TMEM260-209ENST00000556079 H0YGN5 161 aa7.73□□□□□ -1.17
TMEM260-209ENST00000556079 M0R2C6 588 aa7.73□□□□□ -1.17
TMEM260-209ENST00000556079 CTNND1O60716 968 aaKnown RBP7.73□□□□□ -1.17
TMEM260-209ENST00000556079 BAG3O95817 575 aa7.73□□□□□ -1.17
TMEM260-209ENST00000556079 GH2P01242 217 aa7.73□□□□□ -1.17
TMEM260-209ENST00000556079 IGHDP01880 384 aa7.73□□□□□ -1.17
TMEM260-209ENST00000556079 GUCY1A2P33402 732 aa7.73□□□□□ -1.17
TMEM260-209ENST00000556079 SHMT1P34896 483 aa7.73□□□□□ -1.17
TMEM260-209ENST00000556079 EMP3P54852 163 aa7.73□□□□□ -1.17
TMEM260-209ENST00000556079 MTMR2Q13614 643 aa7.73□□□□□ -1.17
TMEM260-209ENST00000556079 POTEEQ6S8J3 1075 aa7.73□□□□□ -1.17
TMEM260-209ENST00000556079 ANKRD23Q86SG2 305 aa7.73□□□□□ -1.17
TMEM260-209ENST00000556079 HS6ST3Q8IZP7 471 aa7.73□□□□□ -1.17
TMEM260-209ENST00000556079 CRACR2BQ8N4Y2 399 aaPredicted RBP7.73□□□□□ -1.17
TMEM260-209ENST00000556079 PI4K2BQ8TCG2 481 aa7.73□□□□□ -1.17
TMEM260-209ENST00000556079 ACER1Q8TDN7 264 aa7.73□□□□□ -1.17
TMEM260-209ENST00000556079 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.73□□□□□ -1.17
TMEM260-209ENST00000556079 HOOK2Q96ED9 719 aa7.73□□□□□ -1.17
TMEM260-209ENST00000556079 TRIM47Q96LD4 638 aa7.73□□□□□ -1.17
TMEM260-209ENST00000556079 SEC62Q99442 399 aaKnown RBP7.73□□□□□ -1.17
TMEM260-209ENST00000556079 PUS7LQ9H0K6 701 aaKnown RBP7.73□□□□□ -1.17
TMEM260-209ENST00000556079 ZFYVE28Q9HCC9 887 aa7.73□□□□□ -1.17
TMEM260-209ENST00000556079 ECHDC1Q9NTX5 307 aa7.73□□□□□ -1.17
TMEM260-209ENST00000556079 ZBTB21Q9ULJ3 1066 aa7.73□□□□□ -1.17
TMEM260-209ENST00000556079 SUPT16HQ9Y5B9 1047 aaKnown RBP7.73□□□□□ -1.17
TMEM260-209ENST00000556079 RBBP6Q7Z6E9 1792 aaKnown RBP7.73□□□□□ -1.17
TMEM260-209ENST00000556079 PLXNB2O15031 1838 aa7.73□□□□□ -1.17
TMEM260-209ENST00000556079 TBC1D12O60347 775 aa7.72□□□□□ -1.17
TMEM260-209ENST00000556079 TLR2O60603 784 aa7.72□□□□□ -1.17
TMEM260-209ENST00000556079 HOXB3P14651 431 aaPredicted RBP7.72□□□□□ -1.17
TMEM260-209ENST00000556079 LACTBP83111 547 aaPredicted RBP7.72□□□□□ -1.17
TMEM260-209ENST00000556079 KIAA1755Q5JYT7 1200 aa7.72□□□□□ -1.17
TMEM260-209ENST00000556079 B4GALNT3Q6L9W6 998 aa7.72□□□□□ -1.17
TMEM260-209ENST00000556079 C17orf99Q6UX52 265 aa7.72□□□□□ -1.17
TMEM260-209ENST00000556079 CCDC129Q6ZRS4 1044 aa7.72□□□□□ -1.17
TMEM260-209ENST00000556079 OSBP2Q969R2 916 aa7.72□□□□□ -1.17
TMEM260-209ENST00000556079 EPB41L4AQ9HCS5 686 aaPredicted RBP7.72□□□□□ -1.17
TMEM260-209ENST00000556079 DCP1AQ9NPI6 582 aaPredicted RBP7.72□□□□□ -1.17
TMEM260-209ENST00000556079 MCM9Q9NXL9 1143 aa7.72□□□□□ -1.17
TMEM260-209ENST00000556079 PI4KBQ9UBF8 816 aa7.72□□□□□ -1.17
TMEM260-209ENST00000556079 GABRQQ9UN88 632 aa7.72□□□□□ -1.17
TMEM260-209ENST00000556079 SALL3Q9BXA9 1300 aa7.72□□□□□ -1.17
TMEM260-209ENST00000556079 CUL9Q8IWT3 2517 aa7.71□□□□□ -1.18
TMEM260-209ENST00000556079 CXCL11O14625 94 aa7.71□□□□□ -1.18
TMEM260-209ENST00000556079 PPP1R37O75864 691 aa7.71□□□□□ -1.18
TMEM260-209ENST00000556079 BCRP11274 1271 aa7.71□□□□□ -1.18
TMEM260-209ENST00000556079 AKR1B1P15121 316 aa7.71□□□□□ -1.18
TMEM260-209ENST00000556079 TTF1Q15361 905 aaPredicted RBP7.71□□□□□ -1.18
TMEM260-209ENST00000556079 MTFR1Q15390 333 aa7.71□□□□□ -1.18
TMEM260-209ENST00000556079 ANKRD45Q5TZF3 282 aa7.71□□□□□ -1.18
TMEM260-209ENST00000556079 NBPF11Q86T75 865 aa7.71□□□□□ -1.18
TMEM260-209ENST00000556079 METTL16Q86W50 562 aaKnown RBP7.71□□□□□ -1.18
TMEM260-209ENST00000556079 ZNF280CQ8ND82 737 aa7.71□□□□□ -1.18
TMEM260-209ENST00000556079 CRNKL1Q9BZJ0 848 aaKnown RBP7.71□□□□□ -1.18
TMEM260-209ENST00000556079 LNPKQ9C0E8 428 aa7.71□□□□□ -1.18
TMEM260-209ENST00000556079 RLFQ13129 1914 aa7.71□□□□□ -1.18
TMEM260-209ENST00000556079 LAMA2P24043 3122 aaKnown RBP7.7□□□□□ -1.18
TMEM260-209ENST00000556079 A0A1W2PRG0 241 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 USP17L5A8MUK1 530 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 FOXP2O15409 715 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 POLR3DP05423 398 aaPredicted RBP7.7□□□□□ -1.18
TMEM260-209ENST00000556079 HLA-DOAP06340 250 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 OSBPP22059 807 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 PSMC4P43686 418 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 PRKCZQ05513 592 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 GABPAQ06546 454 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 SEPT2Q15019 361 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 RAB3GAP1Q15042 981 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 ARHGEF6Q15052 776 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 SKAP1Q86WV1 359 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 ANKRD13CQ8N6S4 541 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 SHISA4Q96DD7 197 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 TRIM34Q9BYJ4 488 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 ASCC2Q9H1I8 757 aaPredicted RBP7.7□□□□□ -1.18
TMEM260-209ENST00000556079 DHX36Q9H2U1 1008 aaKnown RBP7.7□□□□□ -1.18
TMEM260-209ENST00000556079 CHMP4BQ9H444 224 aaKnown RBP7.7□□□□□ -1.18
TMEM260-209ENST00000556079 TXNRD2Q9NNW7 524 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 EMILIN3Q9NT22 766 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 HERC5Q9UII4 1024 aaKnown RBP7.7□□□□□ -1.18
TMEM260-209ENST00000556079 AGTPBP1Q9UPW5 1226 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 TACC3Q9Y6A5 838 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 SLC4A4Q9Y6R1 1079 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 PARP14Q460N5 1801 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 UNC80Q8N2C7 3258 aa7.7□□□□□ -1.18
TMEM260-209ENST00000556079 GREB1LQ9C091 1923 aaPredicted RBP7.7□□□□□ -1.18
TMEM260-209ENST00000556079 COL11A1P12107 1806 aaPredicted RBP7.69□□□□□ -1.18
TMEM260-209ENST00000556079 FAM205CA6NFA0 338 aa7.69□□□□□ -1.18
TMEM260-209ENST00000556079 GSG1L2A8MUP6 293 aa7.69□□□□□ -1.18
TMEM260-209ENST00000556079 USP17L12C9JPN9 530 aa7.69□□□□□ -1.18
TMEM260-209ENST00000556079 USP17L21D6R901 530 aa7.69□□□□□ -1.18
TMEM260-209ENST00000556079 MPHOSPH10O00566 681 aaKnown RBP7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms