RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 SSC5DA1L4H1 1573 aa13.11□□□□□ -0.31
SHMT2-220ENST00000555634 PTPRFP10586 1907 aa13.1□□□□□ -0.31
SHMT2-220ENST00000555634 KLF18A0A0U1RQI7 1052 aa13.1□□□□□ -0.31
SHMT2-220ENST00000555634 POTECB2RU33 542 aa13.1□□□□□ -0.31
SHMT2-220ENST00000555634 CPLX1O14810 134 aa13.1□□□□□ -0.31
SHMT2-220ENST00000555634 ZBTB43O43298 467 aa13.1□□□□□ -0.31
SHMT2-220ENST00000555634 CDKL5O76039 1030 aa13.1□□□□□ -0.31
SHMT2-220ENST00000555634 DDAH1O94760 285 aa13.1□□□□□ -0.31
SHMT2-220ENST00000555634 GH2P01242 217 aa13.1□□□□□ -0.31
SHMT2-220ENST00000555634 TOP1P11387 765 aaKnown RBP13.1□□□□□ -0.31
SHMT2-220ENST00000555634 AKR1B1P15121 316 aa13.1□□□□□ -0.31
SHMT2-220ENST00000555634 KIF5BP33176 963 aa13.1□□□□□ -0.31
SHMT2-220ENST00000555634 CAP2P40123 477 aa13.1□□□□□ -0.31
SHMT2-220ENST00000555634 RCAN1P53805 252 aa13.1□□□□□ -0.31
SHMT2-220ENST00000555634 EXOSC10Q01780 885 aaKnown RBP13.1□□□□□ -0.31
SHMT2-220ENST00000555634 MAP1SQ66K74 1059 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-220ENST00000555634 SCYL3Q8IZE3 742 aa13.1□□□□□ -0.31
SHMT2-220ENST00000555634 ENAHQ8N8S7 591 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-220ENST00000555634 CTCFLQ8NI51 663 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-220ENST00000555634 LRRC2Q9BYS8 371 aa13.1□□□□□ -0.31
SHMT2-220ENST00000555634 GLIS2Q9BZE0 524 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-220ENST00000555634 SLKQ9H2G2 1235 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-220ENST00000555634 DNAJC18Q9H819 358 aa13.1□□□□□ -0.31
SHMT2-220ENST00000555634 ZNF408Q9H9D4 720 aa13.1□□□□□ -0.31
SHMT2-220ENST00000555634 GOPCQ9HD26 462 aa13.1□□□□□ -0.31
SHMT2-220ENST00000555634 ISY1Q9ULR0 285 aaKnown RBP13.1□□□□□ -0.31
SHMT2-220ENST00000555634 SYNPO2Q9UMS6 1093 aa13.1□□□□□ -0.31
SHMT2-220ENST00000555634 KIF3AQ9Y496 699 aa13.1□□□□□ -0.31
SHMT2-220ENST00000555634 RAD21O60216 631 aa13.09□□□□□ -0.31
SHMT2-220ENST00000555634 METAP2P50579 478 aaKnown RBP eCLIP13.09□□□□□ -0.311e-6■■■□□ 18.3
SHMT2-220ENST00000555634 ANTXR2P58335 489 aa13.09□□□□□ -0.31
SHMT2-220ENST00000555634 FKBP1BP68106 108 aa13.09□□□□□ -0.31
SHMT2-220ENST00000555634 MAP3K10Q02779 954 aa13.09□□□□□ -0.31
SHMT2-220ENST00000555634 EVX2Q03828 476 aa13.09□□□□□ -0.31
SHMT2-220ENST00000555634 PPP2R5BQ15173 497 aa13.09□□□□□ -0.31
SHMT2-220ENST00000555634 SGMS1Q86VZ5 419 aa13.09□□□□□ -0.31
SHMT2-220ENST00000555634 MICU3Q86XE3 530 aa13.09□□□□□ -0.31
SHMT2-220ENST00000555634 ZNF654Q8IZM8 581 aa13.09□□□□□ -0.31
SHMT2-220ENST00000555634 SMC1BQ8NDV3 1235 aa13.09□□□□□ -0.31
SHMT2-220ENST00000555634 CEP95Q96GE4 821 aa13.09□□□□□ -0.31
SHMT2-220ENST00000555634 AGXT2Q9BYV1 514 aa13.09□□□□□ -0.31
SHMT2-220ENST00000555634 LY9Q9HBG7 655 aa13.09□□□□□ -0.31
SHMT2-220ENST00000555634 INCENPQ9NQS7 918 aa13.09□□□□□ -0.31
SHMT2-220ENST00000555634 RBM28Q9NW13 759 aaKnown RBP13.09□□□□□ -0.31
SHMT2-220ENST00000555634 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-220ENST00000555634 LOC285556D6RIA3 1793 aa13.08□□□□□ -0.32
SHMT2-220ENST00000555634 UNCXA6NJT0 531 aa13.08□□□□□ -0.32
SHMT2-220ENST00000555634 GOLGA8AA7E2F4 631 aa13.08□□□□□ -0.32
SHMT2-220ENST00000555634 APOBRQ0VD83 1088 aa13.08□□□□□ -0.32
SHMT2-220ENST00000555634 TOB2Q14106 344 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-220ENST00000555634 APOA5Q6Q788 366 aa13.08□□□□□ -0.32
SHMT2-220ENST00000555634 CDAN1Q8IWY9 1227 aa13.08□□□□□ -0.32
SHMT2-220ENST00000555634 ANKRD13AQ8IZ07 590 aa13.08□□□□□ -0.32
SHMT2-220ENST00000555634 C2orf69Q8N8R5 385 aa13.08□□□□□ -0.32
SHMT2-220ENST00000555634 PNMA1Q8ND90 353 aa13.08□□□□□ -0.32
SHMT2-220ENST00000555634 NUP133Q8WUM0 1156 aa13.08□□□□□ -0.32
SHMT2-220ENST00000555634 ZNF274Q96GC6 653 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-220ENST00000555634 MTMR4Q9NYA4 1195 aa13.08□□□□□ -0.32
SHMT2-220ENST00000555634 USP17L5A8MUK1 530 aa13.07□□□□□ -0.32
SHMT2-220ENST00000555634 SMIM22K7EJ46 135 aa13.07□□□□□ -0.32
SHMT2-220ENST00000555634 PRKG1Q13976 671 aa13.07□□□□□ -0.32
SHMT2-220ENST00000555634 SEPT2Q15019 361 aa13.07□□□□□ -0.32
SHMT2-220ENST00000555634 NOL9Q5SY16 702 aaKnown RBP13.07□□□□□ -0.32
SHMT2-220ENST00000555634 PRAMEF18Q5VWM3 479 aa13.07□□□□□ -0.32
SHMT2-220ENST00000555634 IGDCC4Q8TDY8 1250 aa13.07□□□□□ -0.32
SHMT2-220ENST00000555634 KLRG1Q96E93 195 aa13.07□□□□□ -0.32
SHMT2-220ENST00000555634 NYAP2Q9P242 653 aa13.07□□□□□ -0.32
SHMT2-220ENST00000555634 NMT2O60551 498 aa13.06□□□□□ -0.32
SHMT2-220ENST00000555634 GNAQP50148 359 aa13.06□□□□□ -0.32
SHMT2-220ENST00000555634 USP14P54578 494 aa13.06□□□□□ -0.32
SHMT2-220ENST00000555634 STK3Q13188 491 aa13.06□□□□□ -0.32
SHMT2-220ENST00000555634 SEC23AQ15436 765 aa13.06□□□□□ -0.32
SHMT2-220ENST00000555634 RTN1Q16799 776 aa13.06□□□□□ -0.32
SHMT2-220ENST00000555634 TRIM22Q8IYM9 498 aa13.06□□□□□ -0.32
SHMT2-220ENST00000555634 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.06□□□□□ -0.328e-7■■□□□ 11.7
SHMT2-220ENST00000555634 TMX3Q96JJ7 454 aa13.06□□□□□ -0.32
SHMT2-220ENST00000555634 CLIP2Q9UDT6 1046 aa13.06□□□□□ -0.32
SHMT2-220ENST00000555634 RBBP6Q7Z6E9 1792 aaKnown RBP13.06□□□□□ -0.32
SHMT2-220ENST00000555634 NID2Q14112 1375 aa13.06□□□□□ -0.32
SHMT2-220ENST00000555634 PHF20L1A8MW92 1017 aa13.05□□□□□ -0.32
SHMT2-220ENST00000555634 CELF2O95319 508 aaKnown RBP13.05□□□□□ -0.32
SHMT2-220ENST00000555634 PARP1P09874 1014 aaKnown RBP13.05□□□□□ -0.32
SHMT2-220ENST00000555634 POTEIP0CG38 1075 aa13.05□□□□□ -0.32
SHMT2-220ENST00000555634 POTEJP0CG39 1038 aa13.05□□□□□ -0.32
SHMT2-220ENST00000555634 EEF2P13639 858 aaKnown RBP13.05□□□□□ -0.32
SHMT2-220ENST00000555634 MAP3K9P80192 1104 aa13.05□□□□□ -0.32
SHMT2-220ENST00000555634 AKAP17AQ02040 695 aaKnown RBP13.05□□□□□ -0.32
SHMT2-220ENST00000555634 CCDC96Q2M329 555 aa13.05□□□□□ -0.32
SHMT2-220ENST00000555634 ASPRV1Q53RT3 343 aa13.05□□□□□ -0.32
SHMT2-220ENST00000555634 LRRC47Q8N1G4 583 aaKnown RBP13.05□□□□□ -0.32
SHMT2-220ENST00000555634 RBM46Q8TBY0 533 aaKnown RBP13.05□□□□□ -0.32
SHMT2-220ENST00000555634 DCAF4Q8WV16 495 aa13.05□□□□□ -0.32
SHMT2-220ENST00000555634 ANKS1AQ92625 1134 aa13.05□□□□□ -0.32
SHMT2-220ENST00000555634 GTF3C6Q969F1 213 aa13.05□□□□□ -0.32
SHMT2-220ENST00000555634 IPO9Q96P70 1041 aaKnown RBP13.05□□□□□ -0.32
SHMT2-220ENST00000555634 MAP3K14Q99558 947 aa13.05□□□□□ -0.32
SHMT2-220ENST00000555634 TMEM47Q9BQJ4 181 aa13.05□□□□□ -0.32
SHMT2-220ENST00000555634 LZTS2Q9BRK4 669 aa13.05□□□□□ -0.32
SHMT2-220ENST00000555634 GBA2Q9HCG7 927 aaPredicted RBP13.05□□□□□ -0.32
SHMT2-220ENST00000555634 IL17RBQ9NRM6 502 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms