RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 CEP126Q9P2H0 1117 aa13.27□□□□□ -0.29
SHMT2-216ENST00000554975 TTC41PQ6P2S7 1318 aa13.27□□□□□ -0.29
SHMT2-216ENST00000554975 SALL1Q9NSC2 1324 aa13.27□□□□□ -0.29
SHMT2-216ENST00000554975 PNMA6EA0A0J9YXQ4 647 aa13.26□□□□□ -0.29
SHMT2-216ENST00000554975 APBB1O00213 710 aa13.26□□□□□ -0.29
SHMT2-216ENST00000554975 SMARCA5O60264 1052 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-216ENST00000554975 NUCB2P80303 420 aa13.26□□□□□ -0.29
SHMT2-216ENST00000554975 SHHQ15465 462 aa13.26□□□□□ -0.29
SHMT2-216ENST00000554975 SKOR2Q2VWA4 1001 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-216ENST00000554975 ATG9AQ7Z3C6 839 aa13.26□□□□□ -0.29
SHMT2-216ENST00000554975 ZNF280CQ8ND82 737 aa13.26□□□□□ -0.29
SHMT2-216ENST00000554975 USP6NLQ92738 828 aa13.26□□□□□ -0.29
SHMT2-216ENST00000554975 CWC22Q9HCG8 908 aaKnown RBP13.26□□□□□ -0.29
SHMT2-216ENST00000554975 CIAO1O76071 339 aa13.25□□□□□ -0.29
SHMT2-216ENST00000554975 XRCC5P13010 732 aaKnown RBP13.25□□□□□ -0.29
SHMT2-216ENST00000554975 ZKSCAN1P17029 563 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-216ENST00000554975 IL15P40933 162 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-216ENST00000554975 BTDP43251 543 aa13.25□□□□□ -0.29
SHMT2-216ENST00000554975 ATP2B3Q16720 1220 aa13.25□□□□□ -0.29
SHMT2-216ENST00000554975 POTEEQ6S8J3 1075 aa13.25□□□□□ -0.29
SHMT2-216ENST00000554975 OTUD7AQ8TE49 926 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-216ENST00000554975 ZNF384Q8TF68 577 aa13.25□□□□□ -0.29
SHMT2-216ENST00000554975 P2RX7Q99572 595 aaKnown RBP13.25□□□□□ -0.29
SHMT2-216ENST00000554975 LBHD1Q9BQE6 289 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-216ENST00000554975 NUDT12Q9BQG2 462 aa13.25□□□□□ -0.29
SHMT2-216ENST00000554975 ESYT1Q9BSJ8 1104 aa13.25□□□□□ -0.29
SHMT2-216ENST00000554975 SENP6Q9GZR1 1112 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-216ENST00000554975 PORCNQ9H237 461 aa13.25□□□□□ -0.29
SHMT2-216ENST00000554975 FBXO3Q9UK99 471 aa13.25□□□□□ -0.29
SHMT2-216ENST00000554975 TBC1D12O60347 775 aa13.24□□□□□ -0.29
SHMT2-216ENST00000554975 SURF6O75683 361 aaKnown RBP13.24□□□□□ -0.29
SHMT2-216ENST00000554975 ATN1P54259 1190 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-216ENST00000554975 RHBDL3P58872 404 aa13.24□□□□□ -0.29
SHMT2-216ENST00000554975 OS9Q13438 667 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-216ENST00000554975 RAB3GAP1Q15042 981 aa13.24□□□□□ -0.29
SHMT2-216ENST00000554975 Q3C1V9 767 aa13.24□□□□□ -0.29
SHMT2-216ENST00000554975 SH3D19Q5HYK7 790 aa13.24□□□□□ -0.29
SHMT2-216ENST00000554975 USP38Q8NB14 1042 aa13.24□□□□□ -0.29
SHMT2-216ENST00000554975 RHPN1Q8TCX5 695 aa13.24□□□□□ -0.29
SHMT2-216ENST00000554975 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.24□□□□□ -0.29
SHMT2-216ENST00000554975 COPRSQ9NQ92 184 aa13.24□□□□□ -0.29
SHMT2-216ENST00000554975 MYO5AQ9Y4I1 1855 aaKnown RBP13.23□□□□□ -0.29
SHMT2-216ENST00000554975 FOCADQ5VW36 1801 aa13.23□□□□□ -0.29
SHMT2-216ENST00000554975 TRIM6-TRIM34B2RNG4 842 aa13.23□□□□□ -0.29
SHMT2-216ENST00000554975 GLRX3O76003 335 aaKnown RBP13.23□□□□□ -0.29
SHMT2-216ENST00000554975 ADORA1P30542 326 aa13.23□□□□□ -0.29
SHMT2-216ENST00000554975 CAP2P40123 477 aa13.23□□□□□ -0.29
SHMT2-216ENST00000554975 JAG1P78504 1218 aa13.23□□□□□ -0.29
SHMT2-216ENST00000554975 PABPC4Q13310 644 aaKnown RBP eCLIP13.23□□□□□ -0.29
SHMT2-216ENST00000554975 SHROOM1Q2M3G4 852 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-216ENST00000554975 MORN1Q5T089 497 aa13.23□□□□□ -0.29
SHMT2-216ENST00000554975 CLASRPQ8N2M8 674 aaKnown RBP13.23□□□□□ -0.29
SHMT2-216ENST00000554975 RUFY2Q8WXA3 655 aa13.23□□□□□ -0.29
SHMT2-216ENST00000554975 SOCS4Q8WXH5 440 aa13.23□□□□□ -0.29
SHMT2-216ENST00000554975 IL17RAQ96F46 866 aa13.23□□□□□ -0.29
SHMT2-216ENST00000554975 OSBPL5Q9H0X9 879 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-216ENST00000554975 FLRT1Q9NZU1 646 aa13.23□□□□□ -0.29
SHMT2-216ENST00000554975 RBPJLQ9UBG7 517 aa13.23□□□□□ -0.29
SHMT2-216ENST00000554975 SMCHD1A6NHR9 2005 aa13.22□□□□□ -0.29
SHMT2-216ENST00000554975 MROH7-TTC4A0A0A0MT08 1334 aa13.22□□□□□ -0.29
SHMT2-216ENST00000554975 USP17L5A8MUK1 530 aa13.22□□□□□ -0.29
SHMT2-216ENST00000554975 HIP1O00291 1037 aa13.22□□□□□ -0.29
SHMT2-216ENST00000554975 FOSL2P15408 326 aa13.22□□□□□ -0.29
SHMT2-216ENST00000554975 RTP1P59025 263 aa13.22□□□□□ -0.29
SHMT2-216ENST00000554975 HERVK_113P62684 666 aa13.22□□□□□ -0.29
SHMT2-216ENST00000554975 IRX3P78415 501 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-216ENST00000554975 G3BP1Q13283 466 aaKnown RBP eCLIP13.22□□□□□ -0.298e-8■■■□□ 16.6
SHMT2-216ENST00000554975 MTMR2Q13614 643 aa13.22□□□□□ -0.29
SHMT2-216ENST00000554975 GPR142Q7Z601 462 aa13.22□□□□□ -0.29
SHMT2-216ENST00000554975 FAM163AQ96GL9 167 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-216ENST00000554975 GNL3LQ9NVN8 582 aaKnown RBP13.22□□□□□ -0.29
SHMT2-216ENST00000554975 DENND2AQ9ULE3 1009 aa13.22□□□□□ -0.29
SHMT2-216ENST00000554975 CHMLP26374 656 aa13.21□□□□□ -0.29
SHMT2-216ENST00000554975 RGS2P41220 211 aa13.21□□□□□ -0.29
SHMT2-216ENST00000554975 ERVK-9P63128 1117 aa13.21□□□□□ -0.29
SHMT2-216ENST00000554975 ERVK-24P63145 666 aa13.21□□□□□ -0.29
SHMT2-216ENST00000554975 TFCP2Q12800 502 aa13.21□□□□□ -0.29
SHMT2-216ENST00000554975 RASGRF1Q13972 1273 aa13.21□□□□□ -0.29
SHMT2-216ENST00000554975 CLEC17AQ6ZS10 378 aa13.21□□□□□ -0.29
SHMT2-216ENST00000554975 DZIP1Q86YF9 867 aaKnown RBP13.21□□□□□ -0.29
SHMT2-216ENST00000554975 GPRC5AQ8NFJ5 357 aa13.21□□□□□ -0.29
SHMT2-216ENST00000554975 APBA2Q99767 749 aa13.21□□□□□ -0.29
SHMT2-216ENST00000554975 ABCF2Q9UG63 623 aa13.21□□□□□ -0.29
SHMT2-216ENST00000554975 RAD50Q92878 1312 aa13.2□□□□□ -0.3
SHMT2-216ENST00000554975 TCF20Q9UGU0 1960 aaKnown RBP13.2□□□□□ -0.3
SHMT2-216ENST00000554975 BDP1A6H8Y1 2624 aa13.2□□□□□ -0.3
SHMT2-216ENST00000554975 HOXA7P31268 230 aaPredicted RBP13.2□□□□□ -0.3
SHMT2-216ENST00000554975 CCDC102BQ68D86 513 aa13.2□□□□□ -0.3
SHMT2-216ENST00000554975 TRMT44Q8IYL2 757 aaKnown RBP13.2□□□□□ -0.3
SHMT2-216ENST00000554975 TRPV1Q8NER1 839 aa13.2□□□□□ -0.3
SHMT2-216ENST00000554975 SYMPKQ92797 1274 aaKnown RBP13.2□□□□□ -0.3
SHMT2-216ENST00000554975 BADQ92934 168 aa13.2□□□□□ -0.3
SHMT2-216ENST00000554975 NEUROD6Q96NK8 337 aa13.2□□□□□ -0.3
SHMT2-216ENST00000554975 PAGR1Q9BTK6 254 aa13.2□□□□□ -0.3
SHMT2-216ENST00000554975 AKAP2Q9Y2D5 859 aa13.2□□□□□ -0.3
SHMT2-216ENST00000554975 ATP11BQ9Y2G3 1177 aa13.2□□□□□ -0.3
SHMT2-216ENST00000554975 NDUFB9Q9Y6M9 179 aa13.2□□□□□ -0.3
SHMT2-216ENST00000554975 PLXNA1Q9UIW2 1896 aa13.2□□□□□ -0.3
SHMT2-216ENST00000554975 GPR75-ASB3A0A0A6YYF3 556 aa13.19□□□□□ -0.3
SHMT2-216ENST00000554975 TNFRSF10AO00220 468 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms