RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ANKRD45Q5TZF3 282 aa19.27■□□□□ 0.68
CCDC88C-209ENST00000554872 MYH8P13535 1937 aa19.26■□□□□ 0.67
CCDC88C-209ENST00000554872 GSG1L2A8MUP6 293 aa19.26■□□□□ 0.67
CCDC88C-209ENST00000554872 IRF5Q13568 498 aa19.26■□□□□ 0.67
CCDC88C-209ENST00000554872 RAB3GAP1Q15042 981 aa19.26■□□□□ 0.67
CCDC88C-209ENST00000554872 CTR9Q6PD62 1173 aa19.26■□□□□ 0.67
CCDC88C-209ENST00000554872 ANKRD13CQ8N6S4 541 aa19.26■□□□□ 0.67
CCDC88C-209ENST00000554872 RWDD1Q9H446 243 aaPredicted RBP19.26■□□□□ 0.67
CCDC88C-209ENST00000554872 GPAA1O43292 621 aa19.25■□□□□ 0.67
CCDC88C-209ENST00000554872 PDE1AP54750 535 aa19.25■□□□□ 0.67
CCDC88C-209ENST00000554872 HERVK_113P62684 666 aa19.25■□□□□ 0.67
CCDC88C-209ENST00000554872 LBX2Q6XYB7 198 aa19.25■□□□□ 0.67
CCDC88C-209ENST00000554872 FEZ1Q99689 392 aa19.25■□□□□ 0.67
CCDC88C-209ENST00000554872 GREB1LQ9C091 1923 aaPredicted RBP19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 USP17L15C9J2P7 530 aa19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 USP17L13C9JLJ4 530 aa19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 USP17L11C9JVI0 530 aa19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 USP17L18D6R9N7 530 aa19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 USP17L22D6RA61 530 aa19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 USP17L17D6RBQ6 530 aa19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 USP17L19D6RCP7 530 aa19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 USP17L20D6RJB6 530 aa19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 TNPO2O14787 897 aaKnown RBP19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 CDK8P49336 464 aa19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 PRKCZQ05513 592 aa19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 USP17L24Q0WX57 530 aa19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 SEPT2Q15019 361 aa19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 ZMYM1Q5SVZ6 1142 aa19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 SLC44A5Q8NCS7 719 aa19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 SLAIN1Q8ND83 568 aa19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 RAET1EQ8TD07 263 aa19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 ACER1Q8TDN7 264 aa19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 PXYLP1Q8TE99 480 aa19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 DYNLL2Q96FJ2 89 aa19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 P2RX7Q99572 595 aaKnown RBP19.24■□□□□ 0.67
CCDC88C-209ENST00000554872 VCAM1P19320 739 aa19.23■□□□□ 0.67
CCDC88C-209ENST00000554872 GRK4P32298 578 aa19.23■□□□□ 0.67
CCDC88C-209ENST00000554872 EXOC6Q8TAG9 804 aa19.23■□□□□ 0.67
CCDC88C-209ENST00000554872 COA7Q96BR5 231 aa19.23■□□□□ 0.67
CCDC88C-209ENST00000554872 EVI5LQ96CN4 794 aa19.23■□□□□ 0.67
CCDC88C-209ENST00000554872 FSD1Q9BTV5 496 aa19.23■□□□□ 0.67
CCDC88C-209ENST00000554872 KIAA0100Q14667 2235 aaKnown RBP19.23■□□□□ 0.67
CCDC88C-209ENST00000554872 CYP2D7A0A087X1C5 515 aa19.22■□□□□ 0.67
CCDC88C-209ENST00000554872 M0R2C6 588 aa19.22■□□□□ 0.67
CCDC88C-209ENST00000554872 CATSPERGQ6ZRH7 1159 aa19.22■□□□□ 0.67
CCDC88C-209ENST00000554872 LPAR1Q92633 364 aa19.22■□□□□ 0.67
CCDC88C-209ENST00000554872 SH2D4AQ9H788 454 aa19.22■□□□□ 0.67
CCDC88C-209ENST00000554872 EPB41L4AQ9HCS5 686 aaPredicted RBP19.22■□□□□ 0.67
CCDC88C-209ENST00000554872 MKI67P46013 3256 aaKnown RBP19.21■□□□□ 0.67
CCDC88C-209ENST00000554872 A0A1W2PRG0 241 aa19.21■□□□□ 0.67
CCDC88C-209ENST00000554872 POTEFA5A3E0 1075 aa19.21■□□□□ 0.67
CCDC88C-209ENST00000554872 PATL2C9JE40 543 aaKnown RBP19.21■□□□□ 0.67
CCDC88C-209ENST00000554872 MPHOSPH10O00566 681 aaKnown RBP19.21■□□□□ 0.67
CCDC88C-209ENST00000554872 AKR1B1P15121 316 aa19.21■□□□□ 0.67
CCDC88C-209ENST00000554872 FLT3LGP49771 235 aa19.21■□□□□ 0.67
CCDC88C-209ENST00000554872 GPRC5AQ8NFJ5 357 aa19.21■□□□□ 0.67
CCDC88C-209ENST00000554872 SH3TC2Q8TF17 1288 aa19.21■□□□□ 0.67
CCDC88C-209ENST00000554872 TMEM106CQ9BVX2 250 aa19.21■□□□□ 0.67
CCDC88C-209ENST00000554872 OSBPL3Q9H4L5 887 aa19.21■□□□□ 0.67
CCDC88C-209ENST00000554872 RBPJLQ9UBG7 517 aa19.21■□□□□ 0.67
CCDC88C-209ENST00000554872 GABRQQ9UN88 632 aa19.21■□□□□ 0.67
CCDC88C-209ENST00000554872 TMX2Q9Y320 296 aa19.21■□□□□ 0.67
CCDC88C-209ENST00000554872 SMIM22K7EJ46 135 aa19.2■□□□□ 0.66
CCDC88C-209ENST00000554872 CAPN2P17655 700 aa19.2■□□□□ 0.66
CCDC88C-209ENST00000554872 NUCB1Q02818 461 aa19.2■□□□□ 0.66
CCDC88C-209ENST00000554872 ICA1Q05084 483 aa19.2■□□□□ 0.66
CCDC88C-209ENST00000554872 POTEEQ6S8J3 1075 aa19.2■□□□□ 0.66
CCDC88C-209ENST00000554872 SIAH1Q8IUQ4 282 aa19.2■□□□□ 0.66
CCDC88C-209ENST00000554872 KANSL2Q9H9L4 492 aa19.2■□□□□ 0.66
CCDC88C-209ENST00000554872 ARHGEF10LQ9HCE6 1279 aa19.2■□□□□ 0.66
CCDC88C-209ENST00000554872 TXNRD2Q9NNW7 524 aa19.2■□□□□ 0.66
CCDC88C-209ENST00000554872 RABGAP1Q9Y3P9 1069 aa19.2■□□□□ 0.66
CCDC88C-209ENST00000554872 SUPT16HQ9Y5B9 1047 aaKnown RBP19.2■□□□□ 0.66
CCDC88C-209ENST00000554872 A0A0G2JMZ2 1700 aa19.2■□□□□ 0.66
CCDC88C-209ENST00000554872 MAPK4P31152 587 aa19.19■□□□□ 0.66
CCDC88C-209ENST00000554872 ERVK-9P63128 1117 aa19.19■□□□□ 0.66
CCDC88C-209ENST00000554872 ERVK-24P63145 666 aa19.19■□□□□ 0.66
CCDC88C-209ENST00000554872 CHD1LQ86WJ1 897 aa19.19■□□□□ 0.66
CCDC88C-209ENST00000554872 NACAP1Q9BZK3 213 aa19.19■□□□□ 0.66
CCDC88C-209ENST00000554872 ZNF287Q9HBT7 754 aa19.19■□□□□ 0.66
CCDC88C-209ENST00000554872 GJD2Q9UKL4 321 aa19.19■□□□□ 0.66
CCDC88C-209ENST00000554872 ADCY3O60266 1144 aa19.18■□□□□ 0.66
CCDC88C-209ENST00000554872 IGHDP01880 384 aa19.18■□□□□ 0.66
CCDC88C-209ENST00000554872 RASA1P20936 1047 aa19.18■□□□□ 0.66
CCDC88C-209ENST00000554872 TDO2P48775 406 aa19.18■□□□□ 0.66
CCDC88C-209ENST00000554872 ZYXQ15942 572 aaKnown RBP19.18■□□□□ 0.66
CCDC88C-209ENST00000554872 IFNL3Q8IZI9 196 aa19.18■□□□□ 0.66
CCDC88C-209ENST00000554872 SOCS4Q8WXH5 440 aa19.18■□□□□ 0.66
CCDC88C-209ENST00000554872 LNPKQ9C0E8 428 aa19.18■□□□□ 0.66
CCDC88C-209ENST00000554872 RPAP3Q9H6T3 665 aaPredicted RBP19.18■□□□□ 0.66
CCDC88C-209ENST00000554872 VCPKMTQ9H867 229 aa19.18■□□□□ 0.66
CCDC88C-209ENST00000554872 PLXNB2O15031 1838 aa19.18■□□□□ 0.66
CCDC88C-209ENST00000554872 PLIN4Q96Q06 1357 aa19.18■□□□□ 0.66
CCDC88C-209ENST00000554872 RLFQ13129 1914 aa19.17■□□□□ 0.66
CCDC88C-209ENST00000554872 DOCK3Q8IZD9 2030 aa19.17■□□□□ 0.66
CCDC88C-209ENST00000554872 PDE4DIPQ5VU43 2346 aa19.17■□□□□ 0.66
CCDC88C-209ENST00000554872 UBXN2AP68543 259 aa19.17■□□□□ 0.66
CCDC88C-209ENST00000554872 SEC62Q99442 399 aaKnown RBP19.17■□□□□ 0.66
CCDC88C-209ENST00000554872 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.17■□□□□ 0.66
CCDC88C-209ENST00000554872 HELLSQ9NRZ9 838 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms