RNA–Protein interactions for RNA: ENST00000554685.2

SHOX2-206, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-206ENST00000554685 NKX2-3Q8TAU0 364 aa16.82■□□□□ 0.28
SHOX2-206ENST00000554685 INTS4Q96HW7 963 aaKnown RBP16.82■□□□□ 0.28
SHOX2-206ENST00000554685 KANSL2Q9H9L4 492 aa16.82■□□□□ 0.28
SHOX2-206ENST00000554685 RRAGCQ9HB90 399 aa16.82■□□□□ 0.28
SHOX2-206ENST00000554685 CLEC11AQ9Y240 323 aa16.82■□□□□ 0.28
SHOX2-206ENST00000554685 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.82■□□□□ 0.28
SHOX2-206ENST00000554685 ZBTB43O43298 467 aa16.81■□□□□ 0.28
SHOX2-206ENST00000554685 PFKFB2O60825 505 aa16.81■□□□□ 0.28
SHOX2-206ENST00000554685 TTLL1O95922 423 aa16.81■□□□□ 0.28
SHOX2-206ENST00000554685 PDIA3P30101 505 aaKnown RBP16.81■□□□□ 0.28
SHOX2-206ENST00000554685 NOVP48745 357 aa16.81■□□□□ 0.28
SHOX2-206ENST00000554685 MIGA2Q7L4E1 593 aa16.81■□□□□ 0.28
SHOX2-206ENST00000554685 LDHDQ86WU2 507 aa16.81■□□□□ 0.28
SHOX2-206ENST00000554685 CDAN1Q8IWY9 1227 aa16.81■□□□□ 0.28
SHOX2-206ENST00000554685 LARP6Q9BRS8 491 aaKnown RBP16.81■□□□□ 0.28
SHOX2-206ENST00000554685 GPHNQ9NQX3 736 aaPredicted RBP16.81■□□□□ 0.28
SHOX2-206ENST00000554685 IL17RBQ9NRM6 502 aa16.81■□□□□ 0.28
SHOX2-206ENST00000554685 MTMR4Q9NYA4 1195 aa16.81■□□□□ 0.28
SHOX2-206ENST00000554685 STX8Q9UNK0 236 aa16.81■□□□□ 0.28
SHOX2-206ENST00000554685 SCAF8Q9UPN6 1271 aaKnown RBP16.81■□□□□ 0.28
SHOX2-206ENST00000554685 CCDC196A0A1B0GTZ2 297 aa16.8■□□□□ 0.28
SHOX2-206ENST00000554685 NMT2O60551 498 aa16.8■□□□□ 0.28
SHOX2-206ENST00000554685 ASNSP08243 561 aa16.8■□□□□ 0.28
SHOX2-206ENST00000554685 TOP1P11387 765 aaKnown RBP16.8■□□□□ 0.28
SHOX2-206ENST00000554685 CAP2P40123 477 aa16.8■□□□□ 0.28
SHOX2-206ENST00000554685 METAP2P50579 478 aaKnown RBP eCLIP16.8■□□□□ 0.28
SHOX2-206ENST00000554685 CPLX2Q6PUV4 134 aaKnown RBP16.8■□□□□ 0.28
SHOX2-206ENST00000554685 USP48Q86UV5 1035 aa16.8■□□□□ 0.28
SHOX2-206ENST00000554685 ZNF654Q8IZM8 581 aa16.8■□□□□ 0.28
SHOX2-206ENST00000554685 GTF3C6Q969F1 213 aa16.8■□□□□ 0.28
SHOX2-206ENST00000554685 CEP95Q96GE4 821 aa16.8■□□□□ 0.28
SHOX2-206ENST00000554685 NYAP2Q9P242 653 aa16.8■□□□□ 0.28
SHOX2-206ENST00000554685 SYNPO2Q9UMS6 1093 aa16.8■□□□□ 0.28
SHOX2-206ENST00000554685 MYH8P13535 1937 aa16.8■□□□□ 0.28
SHOX2-206ENST00000554685 NID2Q14112 1375 aa16.79■□□□□ 0.28
SHOX2-206ENST00000554685 GOLGA8AA7E2F4 631 aa16.79■□□□□ 0.28
SHOX2-206ENST00000554685 ADM5C9JUS6 153 aa16.79■□□□□ 0.28
SHOX2-206ENST00000554685 PPP1R12BO60237 982 aaPredicted RBP16.79■□□□□ 0.28
SHOX2-206ENST00000554685 CTNND1O60716 968 aaKnown RBP16.79■□□□□ 0.28
SHOX2-206ENST00000554685 GDF11O95390 407 aa16.79■□□□□ 0.28
SHOX2-206ENST00000554685 GH2P01242 217 aa16.79■□□□□ 0.28
SHOX2-206ENST00000554685 ICA1Q05084 483 aa16.79■□□□□ 0.28
SHOX2-206ENST00000554685 STK3Q13188 491 aa16.79■□□□□ 0.28
SHOX2-206ENST00000554685 RCSD1Q6JBY9 416 aa16.79■□□□□ 0.28
SHOX2-206ENST00000554685 PNMA1Q8ND90 353 aa16.79■□□□□ 0.28
SHOX2-206ENST00000554685 MAP3K14Q99558 947 aa16.79■□□□□ 0.28
SHOX2-206ENST00000554685 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.79■□□□□ 0.28
SHOX2-206ENST00000554685 BRPF3Q9ULD4 1205 aa16.79■□□□□ 0.28
SHOX2-206ENST00000554685 ZBTB21Q9ULJ3 1066 aa16.79■□□□□ 0.28
SHOX2-206ENST00000554685 PHF20L1A8MW92 1017 aa16.78■□□□□ 0.28
SHOX2-206ENST00000554685 CDKL5O76039 1030 aa16.78■□□□□ 0.28
SHOX2-206ENST00000554685 LARGE1O95461 756 aa16.78■□□□□ 0.28
SHOX2-206ENST00000554685 SLURP2P0DP57 97 aa16.78■□□□□ 0.28
SHOX2-206ENST00000554685 KIF5BP33176 963 aa16.78■□□□□ 0.28
SHOX2-206ENST00000554685 MICU3Q86XE3 530 aa16.78■□□□□ 0.28
SHOX2-206ENST00000554685 CCDC83Q8IWF9 413 aa16.78■□□□□ 0.28
SHOX2-206ENST00000554685 CDCA5Q96FF9 252 aa16.78■□□□□ 0.28
SHOX2-206ENST00000554685 TMEM47Q9BQJ4 181 aa16.78■□□□□ 0.28
SHOX2-206ENST00000554685 LLPHQ9BRT6 129 aaKnown RBP16.78■□□□□ 0.28
SHOX2-206ENST00000554685 SH2D4AQ9H788 454 aa16.78■□□□□ 0.28
SHOX2-206ENST00000554685 SENP2Q9HC62 589 aa16.78■□□□□ 0.28
SHOX2-206ENST00000554685 ARHGEF10LQ9HCE6 1279 aa16.78■□□□□ 0.28
SHOX2-206ENST00000554685 CWC22Q9HCG8 908 aaKnown RBP16.78■□□□□ 0.28
SHOX2-206ENST00000554685 RBM28Q9NW13 759 aaKnown RBP16.78■□□□□ 0.28
SHOX2-206ENST00000554685 ZNF112Q9UJU3 913 aa16.78■□□□□ 0.28
SHOX2-206ENST00000554685 CPLX1O14810 134 aa16.77■□□□□ 0.28
SHOX2-206ENST00000554685 SLC4A3P48751 1232 aa16.77■□□□□ 0.28
SHOX2-206ENST00000554685 SEPT2Q15019 361 aa16.77■□□□□ 0.28
SHOX2-206ENST00000554685 RAB3GAP1Q15042 981 aa16.77■□□□□ 0.28
SHOX2-206ENST00000554685 RTN1Q16799 776 aa16.77■□□□□ 0.28
SHOX2-206ENST00000554685 PRAMEF18Q5VWM3 479 aa16.77■□□□□ 0.28
SHOX2-206ENST00000554685 CTCFLQ8NI51 663 aaPredicted RBP16.77■□□□□ 0.28
SHOX2-206ENST00000554685 NUP133Q8WUM0 1156 aa16.77■□□□□ 0.28
SHOX2-206ENST00000554685 CLIP2Q9UDT6 1046 aa16.77■□□□□ 0.28
SHOX2-206ENST00000554685 GREB1LQ9C091 1923 aaPredicted RBP16.76■□□□□ 0.27
SHOX2-206ENST00000554685 GUCY1A2P33402 732 aa16.76■□□□□ 0.27
SHOX2-206ENST00000554685 IREB2P48200 963 aaKnown RBP16.76■□□□□ 0.27
SHOX2-206ENST00000554685 GNAQP50148 359 aa16.76■□□□□ 0.27
SHOX2-206ENST00000554685 SCRN1Q12765 414 aa16.76■□□□□ 0.27
SHOX2-206ENST00000554685 SCYL3Q8IZE3 742 aa16.76■□□□□ 0.27
SHOX2-206ENST00000554685 NECAB1Q8N987 351 aa16.76■□□□□ 0.27
SHOX2-206ENST00000554685 FANCBQ8NB91 859 aa16.76■□□□□ 0.27
SHOX2-206ENST00000554685 ZNF526Q8TF50 670 aaPredicted RBP16.76■□□□□ 0.27
SHOX2-206ENST00000554685 MKL1Q969V6 931 aa16.76■□□□□ 0.27
SHOX2-206ENST00000554685 WRNIP1Q96S55 665 aa16.76■□□□□ 0.27
SHOX2-206ENST00000554685 GLIS2Q9BZE0 524 aaPredicted RBP16.76■□□□□ 0.27
SHOX2-206ENST00000554685 NMRK2Q9NPI5 230 aa16.76■□□□□ 0.27
SHOX2-206ENST00000554685 HPS5Q9UPZ3 1129 aa16.76■□□□□ 0.27
SHOX2-206ENST00000554685 SMC3Q9UQE7 1217 aa16.76■□□□□ 0.27
SHOX2-206ENST00000554685 KIF3AQ9Y496 699 aa16.76■□□□□ 0.27
SHOX2-206ENST00000554685 EEF2P13639 858 aaKnown RBP16.75■□□□□ 0.27
SHOX2-206ENST00000554685 CCT2P78371 535 aaKnown RBP16.75■□□□□ 0.27
SHOX2-206ENST00000554685 HMGN5P82970 282 aaKnown RBP16.75■□□□□ 0.27
SHOX2-206ENST00000554685 ATP2B2Q01814 1243 aa16.75■□□□□ 0.27
SHOX2-206ENST00000554685 TROAPQ12815 778 aa16.75■□□□□ 0.27
SHOX2-206ENST00000554685 RRP1BQ14684 758 aaKnown RBP16.75■□□□□ 0.27
SHOX2-206ENST00000554685 NOL9Q5SY16 702 aaKnown RBP16.75■□□□□ 0.27
SHOX2-206ENST00000554685 KLRG1Q96E93 195 aa16.75■□□□□ 0.27
SHOX2-206ENST00000554685 PICK1Q9NRD5 415 aa16.75■□□□□ 0.27
SHOX2-206ENST00000554685 SSC5DA1L4H1 1573 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms