RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 MAP3K12Q12852 859 aa12.84□□□□□ -0.35
SHMT2-215ENST00000554656 USP17L2Q6R6M4 530 aa12.84□□□□□ -0.35
SHMT2-215ENST00000554656 GPRC5AQ8NFJ5 357 aa12.84□□□□□ -0.35
SHMT2-215ENST00000554656 EXOC6Q8TAG9 804 aa12.84□□□□□ -0.35
SHMT2-215ENST00000554656 PAGR1Q9BTK6 254 aa12.84□□□□□ -0.35
SHMT2-215ENST00000554656 LAMA3Q16787 3333 aa12.84□□□□□ -0.35
SHMT2-215ENST00000554656 RPTORQ8N122 1335 aa12.84□□□□□ -0.35
SHMT2-215ENST00000554656 APBB1O00213 710 aa12.83□□□□□ -0.36
SHMT2-215ENST00000554656 CCL14Q16627 93 aa12.83□□□□□ -0.36
SHMT2-215ENST00000554656 SLFNL1Q499Z3 407 aa12.83□□□□□ -0.36
SHMT2-215ENST00000554656 MORN1Q5T089 497 aa12.83□□□□□ -0.36
SHMT2-215ENST00000554656 CERS3Q8IU89 383 aa12.83□□□□□ -0.36
SHMT2-215ENST00000554656 CRBNQ96SW2 442 aa12.83□□□□□ -0.36
SHMT2-215ENST00000554656 KIAA1683Q9H0B3 1180 aa12.83□□□□□ -0.36
SHMT2-215ENST00000554656 ZBTB40Q9NUA8 1239 aa12.83□□□□□ -0.36
SHMT2-215ENST00000554656 COG6Q9Y2V7 657 aa12.83□□□□□ -0.36
SHMT2-215ENST00000554656 ZNF236Q9UL36 1845 aa12.83□□□□□ -0.36
SHMT2-215ENST00000554656 MAGEB6P1A0A0J9YX57 407 aa12.82□□□□□ -0.36
SHMT2-215ENST00000554656 CYP2D6P10635 497 aa12.82□□□□□ -0.36
SHMT2-215ENST00000554656 XRCC5P13010 732 aaKnown RBP12.82□□□□□ -0.36
SHMT2-215ENST00000554656 PRKAR2AP13861 404 aaKnown RBP12.82□□□□□ -0.36
SHMT2-215ENST00000554656 VCAM1P19320 739 aa12.82□□□□□ -0.36
SHMT2-215ENST00000554656 MAPK4P31152 587 aa12.82□□□□□ -0.36
SHMT2-215ENST00000554656 RAB3GAP1Q15042 981 aa12.82□□□□□ -0.36
SHMT2-215ENST00000554656 ABCB5Q2M3G0 1257 aa12.82□□□□□ -0.36
SHMT2-215ENST00000554656 CERKLQ49MI3 558 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-215ENST00000554656 SLC9C2Q5TAH2 1124 aa12.82□□□□□ -0.36
SHMT2-215ENST00000554656 C20orf194Q5TEA3 1177 aa12.82□□□□□ -0.36
SHMT2-215ENST00000554656 TMED8Q6PL24 325 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-215ENST00000554656 GPR142Q7Z601 462 aa12.82□□□□□ -0.36
SHMT2-215ENST00000554656 LCORLQ8N3X6 602 aa12.82□□□□□ -0.36
SHMT2-215ENST00000554656 SOCS4Q8WXH5 440 aa12.82□□□□□ -0.36
SHMT2-215ENST00000554656 FEZ1Q99689 392 aa12.82□□□□□ -0.36
SHMT2-215ENST00000554656 NUDT12Q9BQG2 462 aa12.82□□□□□ -0.36
SHMT2-215ENST00000554656 HMX1Q9NP08 348 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-215ENST00000554656 NR2E3Q9Y5X4 410 aa12.82□□□□□ -0.36
SHMT2-215ENST00000554656 ZNF532Q9HCE3 1301 aa12.82□□□□□ -0.36
SHMT2-215ENST00000554656 COL11A1P12107 1806 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-215ENST00000554656 A0A1W2PRG0 241 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 USP17L15C9J2P7 530 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 USP17L13C9JLJ4 530 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 USP17L11C9JVI0 530 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 USP17L18D6R9N7 530 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 USP17L22D6RA61 530 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 USP17L17D6RBQ6 530 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 USP17L19D6RCP7 530 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 USP17L20D6RJB6 530 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 SMIM22K7EJ46 135 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 GOLIM4O00461 696 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 EVI5O60447 810 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 CHGBP05060 677 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 CAPN2P17655 700 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 CACNB2Q08289 660 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-215ENST00000554656 USP17L24Q0WX57 530 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 SEPT2Q15019 361 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 HSP90AB4PQ58FF6 505 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 CATSPERGQ6ZRH7 1159 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 NECAB2Q7Z6G3 386 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 PLEKHH3Q7Z736 793 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 TTC6Q86TZ1 520 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 ANKLE1Q8NAG6 615 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 SLC44A5Q8NCS7 719 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.81□□□□□ -0.36
SHMT2-215ENST00000554656 GTF3C2Q8WUA4 911 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-215ENST00000554656 SDR42E1Q8WUS8 393 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 KIF1BPQ96EK5 621 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 DNAJC2Q99543 621 aaKnown RBP12.81□□□□□ -0.36
SHMT2-215ENST00000554656 BTBD7Q9P203 1132 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 OGDHLQ9ULD0 1010 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 PFASO15067 1338 aa12.81□□□□□ -0.36
SHMT2-215ENST00000554656 SPDYE16A6NNV3 312 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-215ENST00000554656 ZKSCAN1P17029 563 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-215ENST00000554656 CCND3P30281 292 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-215ENST00000554656 TTF1Q15361 905 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-215ENST00000554656 KIAA1755Q5JYT7 1200 aa12.8□□□□□ -0.36
SHMT2-215ENST00000554656 RPAP2Q8IXW5 612 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-215ENST00000554656 CLASRPQ8N2M8 674 aaKnown RBP12.8□□□□□ -0.36
SHMT2-215ENST00000554656 CCDC136Q96JN2 1154 aa12.8□□□□□ -0.36
SHMT2-215ENST00000554656 APBA2Q99767 749 aa12.8□□□□□ -0.36
SHMT2-215ENST00000554656 CRNKL1Q9BZJ0 848 aaKnown RBP12.8□□□□□ -0.36
SHMT2-215ENST00000554656 CHMP4BQ9H444 224 aaKnown RBP12.8□□□□□ -0.36
SHMT2-215ENST00000554656 DCP1AQ9NPI6 582 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-215ENST00000554656 FLRT1Q9NZU1 646 aa12.8□□□□□ -0.36
SHMT2-215ENST00000554656 RABGAP1Q9Y3P9 1069 aa12.8□□□□□ -0.36
SHMT2-215ENST00000554656 GREB1LQ9C091 1923 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-215ENST00000554656 DNAH12Q6ZR08 3092 aa12.8□□□□□ -0.36
SHMT2-215ENST00000554656 SOX1O00570 391 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-215ENST00000554656 PRKAB2O43741 272 aa12.79□□□□□ -0.36
SHMT2-215ENST00000554656 POLR3DP05423 398 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-215ENST00000554656 RGS2P41220 211 aa12.79□□□□□ -0.36
SHMT2-215ENST00000554656 USP14P54578 494 aa12.79□□□□□ -0.36
SHMT2-215ENST00000554656 MAP2K5Q13163 448 aa12.79□□□□□ -0.36
SHMT2-215ENST00000554656 LHX8Q68G74 356 aa12.79□□□□□ -0.36
SHMT2-215ENST00000554656 LBX2Q6XYB7 198 aa12.79□□□□□ -0.36
SHMT2-215ENST00000554656 CLEC10AQ8IUN9 316 aa12.79□□□□□ -0.36
SHMT2-215ENST00000554656 C7orf61Q8IZ16 206 aa12.79□□□□□ -0.36
SHMT2-215ENST00000554656 BCL11AQ9H165 835 aa12.79□□□□□ -0.36
SHMT2-215ENST00000554656 RPAP3Q9H6T3 665 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-215ENST00000554656 ARMT1Q9H993 441 aa12.79□□□□□ -0.36
SHMT2-215ENST00000554656 MCM9Q9NXL9 1143 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms