RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ZNF142P52746 1687 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-212ENST00000552491 ABCC12Q96J65 1359 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 A0A1B0GTH6 734 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 WNT7AO00755 349 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 IFIT3O14879 490 aaKnown RBP6.19□□□□□ -1.42
LIMA1-212ENST00000552491 PRKAB2O43741 272 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 COBLO75128 1261 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 FMNL1O95466 1100 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-212ENST00000552491 PCCAP05165 728 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-212ENST00000552491 ITGA6P23229 1130 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 GPTP24298 496 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 STX17P56962 302 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 SSRP1Q08945 709 aaKnown RBP6.19□□□□□ -1.42
LIMA1-212ENST00000552491 TRIM29Q14134 588 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 UBE3CQ15386 1083 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 EARS2Q5JPH6 523 aaKnown RBP6.19□□□□□ -1.42
LIMA1-212ENST00000552491 CPLX2Q6PUV4 134 aaKnown RBP6.19□□□□□ -1.42
LIMA1-212ENST00000552491 IFNLR1Q8IU57 520 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-212ENST00000552491 SMYD4Q8IYR2 804 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-212ENST00000552491 SPATA20Q8TB22 786 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 CCDC12Q8WUD4 166 aaPredicted RBP6.19□□□□□ -1.42
LIMA1-212ENST00000552491 CPLX3Q8WVH0 158 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 SPOCK2Q92563 424 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 RABGGTAQ92696 567 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 PNKPQ96T60 521 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 PLA2G12BQ9BX93 195 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.19□□□□□ -1.42
LIMA1-212ENST00000552491 ANKZF1Q9H8Y5 726 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 SUGCTQ9HAC7 445 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 ARFGAP3Q9NP61 516 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 ADGRG1Q9Y653 693 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 PAPPAQ13219 1627 aa6.19□□□□□ -1.42
LIMA1-212ENST00000552491 STK36Q9NRP7 1315 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 VGLL3A8MV65 326 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 NUDT7P0C024 238 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 IFNAR1P17181 557 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 PBX1P40424 430 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 LIFRP42702 1097 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 RBL2Q08999 1139 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 RAD51AP2Q09MP3 1159 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 DPYDQ12882 1025 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 TRIM28Q13263 835 aaKnown RBP6.18□□□□□ -1.42
LIMA1-212ENST00000552491 LONRF2Q1L5Z9 754 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 IFNL3Q8IZI9 196 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 ZBTB38Q8NAP3 1195 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-212ENST00000552491 MLKLQ8NB16 471 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 HELBQ8NG08 1087 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-212ENST00000552491 ZCRB1Q8TBF4 217 aaKnown RBP6.18□□□□□ -1.42
LIMA1-212ENST00000552491 CSRNP2Q9H175 543 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 PUF60Q9UHX1 559 aaKnown RBP6.18□□□□□ -1.42
LIMA1-212ENST00000552491 SLC12A7Q9Y666 1083 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 BAZ2BQ9UIF8 2168 aaKnown RBP6.18□□□□□ -1.42
LIMA1-212ENST00000552491 GSG1L2A8MUP6 293 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 ERVV-2B6SEH9 535 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 RNF225M0QZC1 329 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-212ENST00000552491 MAP2K7O14733 419 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 TXLNAP40222 546 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 PLCD1P51178 756 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 CUL4BQ13620 913 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 NOM1Q5C9Z4 860 aaKnown RBP6.18□□□□□ -1.42
LIMA1-212ENST00000552491 KLHL10Q6JEL2 608 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 NUTM2AQ8IVF1 878 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-212ENST00000552491 DNAJC10Q8IXB1 793 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 EPSTI1Q96J88 318 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 ARMT1Q9H993 441 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 SRPRBQ9Y5M8 271 aaKnown RBP6.18□□□□□ -1.42
LIMA1-212ENST00000552491 TNS2Q63HR2 1409 aa6.18□□□□□ -1.42
LIMA1-212ENST00000552491 MYH6P13533 1939 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 MAP3K15Q6ZN16 1313 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 hCG_1642624A0A1W2PR95 340 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 AKR1B15C9JRZ8 316 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-212ENST00000552491 N4BP1O75113 896 aaKnown RBP6.17□□□□□ -1.42
LIMA1-212ENST00000552491 MBD4O95243 580 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 CDC25AP30304 524 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 AFMP43652 599 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 FXR1P51114 621 aaKnown RBP eCLIP6.17□□□□□ -1.42
LIMA1-212ENST00000552491 RRP12Q5JTH9 1297 aaKnown RBP6.17□□□□□ -1.42
LIMA1-212ENST00000552491 BEND6Q5SZJ8 279 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-212ENST00000552491 WWC2Q6AWC2 1192 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 GOLGA1Q92805 767 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 AIDAQ96BJ3 306 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 ZNF512BQ96KM6 892 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-212ENST00000552491 CABP5Q9NP86 173 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 CNNM1Q9NRU3 951 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 ADD3Q9UEY8 706 aaKnown RBP6.17□□□□□ -1.42
LIMA1-212ENST00000552491 LCMT1Q9UIC8 334 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 HOOK1Q9UJC3 728 aaKnown RBP6.17□□□□□ -1.42
LIMA1-212ENST00000552491 ADAM21Q9UKJ8 722 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 PCDH11XQ9BZA7 1347 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 PCDH11YQ9BZA8 1340 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 SHANK3Q9BYB0 1731 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 CCDC151A5D8V7 595 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 PATL2C9JE40 543 aaKnown RBP6.17□□□□□ -1.42
LIMA1-212ENST00000552491 PDE8BO95263 885 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 GYPCP04921 128 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 CCDC175P0C221 793 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 ARID4AP29374 1257 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-212ENST00000552491 CHMP4BP1P59074 171 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 ALX1Q15699 326 aa6.17□□□□□ -1.42
LIMA1-212ENST00000552491 RTN1Q16799 776 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 123.4 ms