RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 ZSCAN29Q8IWY8 852 aaPredicted RBP17.4■□□□□ 0.38
PTCH1-217ENST00000548420 HERVK_113Q902F9 699 aa17.4■□□□□ 0.38
PTCH1-217ENST00000548420 ARHGAP45Q92619 1136 aa17.4■□□□□ 0.38
PTCH1-217ENST00000548420 BRWD1Q9NSI6 2320 aa17.39■□□□□ 0.38
PTCH1-217ENST00000548420 FAAP100Q0VG06 881 aa17.39■□□□□ 0.37
PTCH1-217ENST00000548420 UIMC1Q96RL1 719 aa17.39■□□□□ 0.37
PTCH1-217ENST00000548420 PAGR1Q9BTK6 254 aa17.39■□□□□ 0.37
PTCH1-217ENST00000548420 USP44Q9H0E7 712 aa17.39■□□□□ 0.37
PTCH1-217ENST00000548420 TMEM39AQ9NV64 488 aa17.39■□□□□ 0.37
PTCH1-217ENST00000548420 PQBP1O60828 265 aaKnown RBP17.38■□□□□ 0.37
PTCH1-217ENST00000548420 CNMDO75829 334 aa17.38■□□□□ 0.37
PTCH1-217ENST00000548420 HOXC6P09630 235 aa17.38■□□□□ 0.37
PTCH1-217ENST00000548420 ATP2B2Q01814 1243 aa17.38■□□□□ 0.37
PTCH1-217ENST00000548420 CAVIN4Q5BKX8 364 aa17.38■□□□□ 0.37
PTCH1-217ENST00000548420 SUCLG2Q96I99 432 aa17.38■□□□□ 0.37
PTCH1-217ENST00000548420 API5Q9BZZ5 524 aaKnown RBP17.38■□□□□ 0.37
PTCH1-217ENST00000548420 SMCHD1A6NHR9 2005 aa17.38■□□□□ 0.37
PTCH1-217ENST00000548420 RFXAPO00287 272 aa17.37■□□□□ 0.37
PTCH1-217ENST00000548420 ACRP10323 421 aa17.37■□□□□ 0.37
PTCH1-217ENST00000548420 PTPREP23469 700 aa17.37■□□□□ 0.37
PTCH1-217ENST00000548420 RABL6Q3YEC7 729 aaPredicted RBP17.37■□□□□ 0.37
PTCH1-217ENST00000548420 KRT40Q6A162 431 aa17.37■□□□□ 0.37
PTCH1-217ENST00000548420 VGLL2Q8N8G2 317 aa17.37■□□□□ 0.37
PTCH1-217ENST00000548420 MSRAQ9UJ68 235 aa17.37■□□□□ 0.37
PTCH1-217ENST00000548420 PHF24Q9UPV7 400 aa17.37■□□□□ 0.37
PTCH1-217ENST00000548420 MTCH2Q9Y6C9 303 aa17.37■□□□□ 0.37
PTCH1-217ENST00000548420 TBC1D12O60347 775 aa17.36■□□□□ 0.37
PTCH1-217ENST00000548420 MTMR2Q13614 643 aa17.36■□□□□ 0.37
PTCH1-217ENST00000548420 RAB30Q15771 203 aa17.36■□□□□ 0.37
PTCH1-217ENST00000548420 LRRC24Q50LG9 513 aa17.36■□□□□ 0.37
PTCH1-217ENST00000548420 FAM47AQ5JRC9 791 aa17.36■□□□□ 0.37
PTCH1-217ENST00000548420 ZNF365Q70YC5 407 aa17.36■□□□□ 0.37
PTCH1-217ENST00000548420 CCAR1Q8IX12 1150 aaKnown RBP17.36■□□□□ 0.37
PTCH1-217ENST00000548420 SLC44A5Q8NCS7 719 aa17.36■□□□□ 0.37
PTCH1-217ENST00000548420 OSBPL5Q9H0X9 879 aaPredicted RBP17.36■□□□□ 0.37
PTCH1-217ENST00000548420 SLC28A3Q9HAS3 691 aa17.36■□□□□ 0.37
PTCH1-217ENST00000548420 KIF16BQ96L93 1317 aa17.36■□□□□ 0.37
PTCH1-217ENST00000548420 SLC15A5A6NIM6 579 aa17.35■□□□□ 0.37
PTCH1-217ENST00000548420 USP17L5A8MUK1 530 aa17.35■□□□□ 0.37
PTCH1-217ENST00000548420 BCAR3O75815 825 aa17.35■□□□□ 0.37
PTCH1-217ENST00000548420 TIMP1P01033 207 aa17.35■□□□□ 0.37
PTCH1-217ENST00000548420 JAG1P78504 1218 aa17.35■□□□□ 0.37
PTCH1-217ENST00000548420 PRAMEF19Q5SWL8 479 aa17.35■□□□□ 0.37
PTCH1-217ENST00000548420 MYH2Q9UKX2 1941 aa17.35■□□□□ 0.37
PTCH1-217ENST00000548420 MYH13Q9UKX3 1938 aa17.35■□□□□ 0.37
PTCH1-217ENST00000548420 SEPT4O43236 478 aa17.34■□□□□ 0.37
PTCH1-217ENST00000548420 ST18O60284 1047 aa17.34■□□□□ 0.37
PTCH1-217ENST00000548420 MYOGP15173 224 aa17.34■□□□□ 0.37
PTCH1-217ENST00000548420 POU3F3P20264 500 aaPredicted RBP17.34■□□□□ 0.37
PTCH1-217ENST00000548420 CAP2P40123 477 aa17.34■□□□□ 0.37
PTCH1-217ENST00000548420 BACE1P56817 501 aa17.34■□□□□ 0.37
PTCH1-217ENST00000548420 FOXK2Q01167 660 aa17.34■□□□□ 0.37
PTCH1-217ENST00000548420 MFSD5Q6N075 450 aa17.34■□□□□ 0.37
PTCH1-217ENST00000548420 MROH5Q6ZUA9 1318 aa17.34■□□□□ 0.37
PTCH1-217ENST00000548420 WDR66Q8TBY9 1149 aa17.34■□□□□ 0.37
PTCH1-217ENST00000548420 KCNH6Q9H252 994 aa17.34■□□□□ 0.37
PTCH1-217ENST00000548420 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.34■□□□□ 0.37
PTCH1-217ENST00000548420 TBX21Q9UL17 535 aa17.34■□□□□ 0.37
PTCH1-217ENST00000548420 COG5Q9UP83 839 aa17.34■□□□□ 0.37
PTCH1-217ENST00000548420 CSF2RAP15509 400 aa17.33■□□□□ 0.36
PTCH1-217ENST00000548420 RABGGTBP53611 331 aa17.33■□□□□ 0.36
PTCH1-217ENST00000548420 PICALMQ13492 652 aa17.33■□□□□ 0.36
PTCH1-217ENST00000548420 GRB14Q14449 540 aa17.33■□□□□ 0.36
PTCH1-217ENST00000548420 ANKRD44Q8N8A2 993 aa17.33■□□□□ 0.36
PTCH1-217ENST00000548420 WDR18Q9BV38 432 aa17.33■□□□□ 0.36
PTCH1-217ENST00000548420 TBC1D2Q9BYX2 928 aa17.33■□□□□ 0.36
PTCH1-217ENST00000548420 BICC1Q9H694 974 aaKnown RBP17.33■□□□□ 0.36
PTCH1-217ENST00000548420 IPO8O15397 1037 aaKnown RBP17.32■□□□□ 0.36
PTCH1-217ENST00000548420 ANKRD33Q7Z3H0 272 aa17.32■□□□□ 0.36
PTCH1-217ENST00000548420 A0A1W2PQ45 241 aaPredicted RBP17.31■□□□□ 0.36
PTCH1-217ENST00000548420 A0A1W2PQY0 241 aa17.31■□□□□ 0.36
PTCH1-217ENST00000548420 EPOPA6NHQ4 379 aa17.31■□□□□ 0.36
PTCH1-217ENST00000548420 PDE8BO95263 885 aa17.31■□□□□ 0.36
PTCH1-217ENST00000548420 TRIM27P14373 513 aa17.31■□□□□ 0.36
PTCH1-217ENST00000548420 FGFR2P21802 821 aa17.31■□□□□ 0.36
PTCH1-217ENST00000548420 SHROOM1Q2M3G4 852 aaPredicted RBP17.31■□□□□ 0.36
PTCH1-217ENST00000548420 ATF7IPQ6VMQ6 1270 aa17.31■□□□□ 0.36
PTCH1-217ENST00000548420 TOX2Q96NM4 488 aa17.31■□□□□ 0.36
PTCH1-217ENST00000548420 A0A0G2JMZ2 1700 aa17.3■□□□□ 0.36
PTCH1-217ENST00000548420 GAKO14976 1311 aa17.3■□□□□ 0.36
PTCH1-217ENST00000548420 PPIGQ13427 754 aaKnown RBP eCLIP17.3■□□□□ 0.36
PTCH1-217ENST00000548420 WDR78Q5VTH9 848 aa17.3■□□□□ 0.36
PTCH1-217ENST00000548420 HLA-CQ95604 372 aa17.3■□□□□ 0.36
PTCH1-217ENST00000548420 CWC22Q9HCG8 908 aaKnown RBP17.3■□□□□ 0.36
PTCH1-217ENST00000548420 TMOD4Q9NZQ9 345 aa17.3■□□□□ 0.36
PTCH1-217ENST00000548420 C5orf42Q9H799 3197 aa17.29■□□□□ 0.36
PTCH1-217ENST00000548420 LDHBP07195 334 aaKnown RBP17.29■□□□□ 0.36
PTCH1-217ENST00000548420 METTL24Q5JXM2 366 aa17.29■□□□□ 0.36
PTCH1-217ENST00000548420 PPP2R2DQ66LE6 453 aa17.29■□□□□ 0.36
PTCH1-217ENST00000548420 AS3MTQ9HBK9 375 aa17.29■□□□□ 0.36
PTCH1-217ENST00000548420 EMILIN3Q9NT22 766 aa17.29■□□□□ 0.36
PTCH1-217ENST00000548420 RABGAP1Q9Y3P9 1069 aa17.29■□□□□ 0.36
PTCH1-217ENST00000548420 CACNA1BQ00975 2339 aa17.29■□□□□ 0.36
PTCH1-217ENST00000548420 GLRX3O76003 335 aaKnown RBP17.28■□□□□ 0.36
PTCH1-217ENST00000548420 PGK1P00558 417 aa17.28■□□□□ 0.36
PTCH1-217ENST00000548420 OLFML2BQ68BL8 750 aa17.28■□□□□ 0.36
PTCH1-217ENST00000548420 GJD3Q8N144 294 aa17.28■□□□□ 0.36
PTCH1-217ENST00000548420 BTBD7Q9P203 1132 aa17.28■□□□□ 0.36
PTCH1-217ENST00000548420 TNNQ9UQP3 1299 aa17.28■□□□□ 0.36
PTCH1-217ENST00000548420 ZFHX2Q9C0A1 2572 aaPredicted RBP17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms