RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 SWAP70Q9UH65 585 aa15.85■□□□□ 0.13
RTN3-213ENST00000543552 TCRBV5S4A2TA0A5A2 114 aa15.84■□□□□ 0.13
RTN3-213ENST00000543552 GLRX3O76003 335 aaKnown RBP15.84■□□□□ 0.13
RTN3-213ENST00000543552 SHMT1P34896 483 aa15.84■□□□□ 0.13
RTN3-213ENST00000543552 PLCD1P51178 756 aa15.84■□□□□ 0.13
RTN3-213ENST00000543552 ERVK-9P63128 1117 aa15.84■□□□□ 0.13
RTN3-213ENST00000543552 ERVK-24P63145 666 aa15.84■□□□□ 0.13
RTN3-213ENST00000543552 CCNA1P78396 465 aa15.84■□□□□ 0.13
RTN3-213ENST00000543552 ZYXQ15942 572 aaKnown RBP15.84■□□□□ 0.13
RTN3-213ENST00000543552 UBE2Q1Q7Z7E8 422 aa15.84■□□□□ 0.13
RTN3-213ENST00000543552 GPATCH3Q96I76 525 aa15.84■□□□□ 0.13
RTN3-213ENST00000543552 DEFB118Q96PH6 123 aa15.84■□□□□ 0.13
RTN3-213ENST00000543552 NUDT12Q9BQG2 462 aa15.84■□□□□ 0.13
RTN3-213ENST00000543552 PAGR1Q9BTK6 254 aa15.84■□□□□ 0.13
RTN3-213ENST00000543552 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.84■□□□□ 0.13
RTN3-213ENST00000543552 BOLA2Q9H3K6 86 aa15.84■□□□□ 0.13
RTN3-213ENST00000543552 ATP8A2Q9NTI2 1148 aa15.84■□□□□ 0.13
RTN3-213ENST00000543552 H0YGN5 161 aa15.83■□□□□ 0.12
RTN3-213ENST00000543552 XRCC5P13010 732 aaKnown RBP15.83■□□□□ 0.12
RTN3-213ENST00000543552 ADD2P35612 726 aa15.83■□□□□ 0.12
RTN3-213ENST00000543552 GABPAQ06546 454 aa15.83■□□□□ 0.12
RTN3-213ENST00000543552 LCORLQ8N3X6 602 aa15.83■□□□□ 0.12
RTN3-213ENST00000543552 HMX1Q9NP08 348 aaPredicted RBP15.83■□□□□ 0.12
RTN3-213ENST00000543552 DCP1AQ9NPI6 582 aaPredicted RBP15.83■□□□□ 0.12
RTN3-213ENST00000543552 GJD2Q9UKL4 321 aa15.83■□□□□ 0.12
RTN3-213ENST00000543552 RABGAP1Q9Y3P9 1069 aa15.83■□□□□ 0.12
RTN3-213ENST00000543552 NR2E3Q9Y5X4 410 aa15.83■□□□□ 0.12
RTN3-213ENST00000543552 DOCK3Q8IZD9 2030 aa15.82■□□□□ 0.12
RTN3-213ENST00000543552 MPHOSPH10O00566 681 aaKnown RBP15.82■□□□□ 0.12
RTN3-213ENST00000543552 MBD4O95243 580 aa15.82■□□□□ 0.12
RTN3-213ENST00000543552 VCAM1P19320 739 aa15.82■□□□□ 0.12
RTN3-213ENST00000543552 TMEM179Q6ZVK1 233 aa15.82■□□□□ 0.12
RTN3-213ENST00000543552 ANKLE1Q8NAG6 615 aa15.82■□□□□ 0.12
RTN3-213ENST00000543552 SDR42E1Q8WUS8 393 aa15.82■□□□□ 0.12
RTN3-213ENST00000543552 SH2D4AQ9H788 454 aa15.82■□□□□ 0.12
RTN3-213ENST00000543552 TXNRD2Q9NNW7 524 aa15.82■□□□□ 0.12
RTN3-213ENST00000543552 RBPJLQ9UBG7 517 aa15.82■□□□□ 0.12
RTN3-213ENST00000543552 RPTORQ8N122 1335 aa15.82■□□□□ 0.12
RTN3-213ENST00000543552 ZKSCAN1P17029 563 aaPredicted RBP15.81■□□□□ 0.12
RTN3-213ENST00000543552 RGS2P41220 211 aa15.81■□□□□ 0.12
RTN3-213ENST00000543552 UBE3CQ15386 1083 aa15.81■□□□□ 0.12
RTN3-213ENST00000543552 CATSPERGQ6ZRH7 1159 aa15.81■□□□□ 0.12
RTN3-213ENST00000543552 PLEKHH3Q7Z736 793 aa15.81■□□□□ 0.12
RTN3-213ENST00000543552 EDC3Q96F86 508 aaKnown RBP15.81■□□□□ 0.12
RTN3-213ENST00000543552 CRISPLD2Q9H0B8 497 aa15.81■□□□□ 0.12
RTN3-213ENST00000543552 ARMT1Q9H993 441 aa15.81■□□□□ 0.12
RTN3-213ENST00000543552 CYP2B6P20813 491 aa15.8■□□□□ 0.12
RTN3-213ENST00000543552 SEPT2Q15019 361 aa15.8■□□□□ 0.12
RTN3-213ENST00000543552 C20orf194Q5TEA3 1177 aa15.8■□□□□ 0.12
RTN3-213ENST00000543552 LBX2Q6XYB7 198 aa15.8■□□□□ 0.12
RTN3-213ENST00000543552 GPR142Q7Z601 462 aa15.8■□□□□ 0.12
RTN3-213ENST00000543552 ACER1Q8TDN7 264 aa15.8■□□□□ 0.12
RTN3-213ENST00000543552 APBA2Q99767 749 aa15.8■□□□□ 0.12
RTN3-213ENST00000543552 RPAP3Q9H6T3 665 aaPredicted RBP15.8■□□□□ 0.12
RTN3-213ENST00000543552 ECHDC1Q9NTX5 307 aa15.8■□□□□ 0.12
RTN3-213ENST00000543552 MYH7P12883 1935 aa15.79■□□□□ 0.12
RTN3-213ENST00000543552 NECAB2Q7Z6G3 386 aa15.79■□□□□ 0.12
RTN3-213ENST00000543552 TRIB2Q92519 343 aa15.79■□□□□ 0.12
RTN3-213ENST00000543552 LPAR1Q92633 364 aa15.79■□□□□ 0.12
RTN3-213ENST00000543552 CCDC17Q96LX7 622 aa15.79■□□□□ 0.12
RTN3-213ENST00000543552 PORCNQ9H237 461 aa15.79■□□□□ 0.12
RTN3-213ENST00000543552 ARHGEF10LQ9HCE6 1279 aa15.79■□□□□ 0.12
RTN3-213ENST00000543552 IVNS1ABPQ9Y6Y0 642 aa15.79■□□□□ 0.12
RTN3-213ENST00000543552 MYH8P13535 1937 aa15.78■□□□□ 0.12
RTN3-213ENST00000543552 PLXNB2O15031 1838 aa15.78■□□□□ 0.12
RTN3-213ENST00000543552 EVI5O60447 810 aa15.78■□□□□ 0.12
RTN3-213ENST00000543552 PRKAR2AP13861 404 aaKnown RBP15.78■□□□□ 0.12
RTN3-213ENST00000543552 GUCY1A2P33402 732 aa15.78■□□□□ 0.12
RTN3-213ENST00000543552 LRRFIP1Q32MZ4 808 aaKnown RBP15.78■□□□□ 0.12
RTN3-213ENST00000543552 MAP3K21Q5TCX8 1036 aa15.78■□□□□ 0.12
RTN3-213ENST00000543552 WDR78Q5VTH9 848 aa15.78■□□□□ 0.12
RTN3-213ENST00000543552 TANGO6Q9C0B7 1094 aa15.78■□□□□ 0.12
RTN3-213ENST00000543552 HOXC10Q9NYD6 342 aa15.78■□□□□ 0.12
RTN3-213ENST00000543552 COLQQ9Y215 455 aaPredicted RBP15.78■□□□□ 0.12
RTN3-213ENST00000543552 SLC4A4Q9Y6R1 1079 aa15.78■□□□□ 0.12
RTN3-213ENST00000543552 RANBP2P49792 3224 aaKnown RBP15.77■□□□□ 0.12
RTN3-213ENST00000543552 CYP2D6P10635 497 aa15.77■□□□□ 0.12
RTN3-213ENST00000543552 ICA1Q05084 483 aa15.77■□□□□ 0.12
RTN3-213ENST00000543552 MAP2K5Q13163 448 aa15.77■□□□□ 0.12
RTN3-213ENST00000543552 Q3C1V9 767 aa15.77■□□□□ 0.12
RTN3-213ENST00000543552 MORN1Q5T089 497 aa15.77■□□□□ 0.12
RTN3-213ENST00000543552 C12orf60Q5U649 245 aa15.77■□□□□ 0.12
RTN3-213ENST00000543552 MB21D1Q8N884 522 aa15.77■□□□□ 0.12
RTN3-213ENST00000543552 USP6NLQ92738 828 aa15.77■□□□□ 0.12
RTN3-213ENST00000543552 ARPP21Q9UBL0 812 aaPredicted RBP15.77■□□□□ 0.12
RTN3-213ENST00000543552 SLC15A5A6NIM6 579 aa15.76■□□□□ 0.11
RTN3-213ENST00000543552 SPDYE16A6NNV3 312 aaPredicted RBP15.76■□□□□ 0.11
RTN3-213ENST00000543552 PRKAB2O43741 272 aa15.76■□□□□ 0.11
RTN3-213ENST00000543552 SMARCA5O60264 1052 aaPredicted RBP15.76■□□□□ 0.11
RTN3-213ENST00000543552 PEX10O60683 326 aa15.76■□□□□ 0.11
RTN3-213ENST00000543552 COG2Q14746 738 aa15.76■□□□□ 0.11
RTN3-213ENST00000543552 CHRDL2Q6WN34 429 aa15.76■□□□□ 0.11
RTN3-213ENST00000543552 C16orf86Q6ZW13 317 aa15.76■□□□□ 0.11
RTN3-213ENST00000543552 SLC44A5Q8NCS7 719 aa15.76■□□□□ 0.11
RTN3-213ENST00000543552 PAWRQ96IZ0 340 aaKnown RBP15.76■□□□□ 0.11
RTN3-213ENST00000543552 NBPF3Q9H094 633 aa15.76■□□□□ 0.11
RTN3-213ENST00000543552 DCTPP1Q9H773 170 aa15.76■□□□□ 0.11
RTN3-213ENST00000543552 USP17L12C9JPN9 530 aa15.75■□□□□ 0.11
RTN3-213ENST00000543552 USP17L21D6R901 530 aa15.75■□□□□ 0.11
RTN3-213ENST00000543552 CNMDO75829 334 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms